Ubash3b (ubiquitin associated and SH3 domain containing, B) - Rat Genome Database

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Gene: Ubash3b (ubiquitin associated and SH3 domain containing, B) Mus musculus
Analyze
Symbol: Ubash3b
Name: ubiquitin associated and SH3 domain containing, B
RGD ID: 1331955
MGI Page MGI
Description: Enables phosphoprotein binding activity and protein tyrosine phosphatase activity. Involved in regulation of osteoclast differentiation. Acts upstream of or within several processes, including collagen-activated tyrosine kinase receptor signaling pathway; negative regulation of bone resorption; and platelet aggregation. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; incisor; limb; nasal cavity epithelium; and retina. Orthologous to human UBASH3B (ubiquitin associated and SH3 domain containing B).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810457I06Rik; BB125008; cbl-interacting protein p70; p70; Sts; STS-1; suppressor of T-cell receptor signaling 1; T-cell ubiquitin ligand 2; TULA; TULA-2; tyrosine-protein phosphatase STS1/TULA2; ubiquitin-associated and SH3 domain-containing protein B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,922,056 - 41,069,358 (-)NCBIGRCm39mm39
GRCm39 Ensembl940,922,394 - 41,072,993 (-)Ensembl
GRCm38941,010,760 - 41,161,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl941,011,098 - 41,161,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv37940,821,724 - 40,965,577 (-)NCBIGRCm37mm9NCBIm37
MGSCv36940,764,710 - 40,908,563 (-)NCBImm8
MGSCv36941,219,202 - 41,364,403 (-)NCBImm8
Celera938,241,137 - 38,383,815 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12370296   PMID:12477932   PMID:14738763   PMID:15226823   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:17490611   PMID:17679096   PMID:19733910   PMID:20585042   PMID:20670933   PMID:21267068   PMID:21393235   PMID:21677750   PMID:21873635   PMID:22267732   PMID:23149425  
PMID:24154525   PMID:24256567   PMID:24587276   PMID:25047644   PMID:25959715   PMID:26365512   PMID:26390156   PMID:27609517   PMID:27765766   PMID:28190767   PMID:28671696   PMID:30018105  
PMID:30333137   PMID:32325033   PMID:32371395  


Genomics

Comparative Map Data
Ubash3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,922,056 - 41,069,358 (-)NCBIGRCm39mm39
GRCm39 Ensembl940,922,394 - 41,072,993 (-)Ensembl
GRCm38941,010,760 - 41,161,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl941,011,098 - 41,161,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv37940,821,724 - 40,965,577 (-)NCBIGRCm37mm9NCBIm37
MGSCv36940,764,710 - 40,908,563 (-)NCBImm8
MGSCv36941,219,202 - 41,364,403 (-)NCBImm8
Celera938,241,137 - 38,383,815 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
UBASH3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11122,655,722 - 122,814,473 (+)EnsemblGRCh38hg38GRCh38
GRCh3811122,655,722 - 122,814,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711122,526,430 - 122,685,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611122,031,640 - 122,190,391 (+)NCBINCBI36hg18NCBI36
Celera11119,685,695 - 119,844,497 (+)NCBI
Cytogenetic Map11q24.1NCBI
HuRef11118,468,875 - 118,627,622 (+)NCBIHuRef
CHM1_111122,412,295 - 122,571,102 (+)NCBICHM1_1
Ubash3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2841,385,419 - 41,532,248 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl841,388,341 - 41,532,201 (-)Ensembl
Rnor_6.0845,224,053 - 45,375,450 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl845,223,992 - 45,375,435 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0843,702,541 - 43,853,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,992,862 - 44,135,847 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1844,001,003 - 44,067,551 (-)NCBI
Celera840,986,547 - 41,129,756 (-)NCBICelera
Cytogenetic Map8q22NCBI
Ubash3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541223,518,240 - 23,667,697 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541223,518,851 - 23,667,617 (+)NCBIChiLan1.0ChiLan1.0
UBASH3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111121,410,178 - 121,567,716 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,410,545 - 121,563,133 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011117,489,411 - 117,647,719 (+)NCBIMhudiblu_PPA_v0panPan3
UBASH3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1511,496,254 - 11,614,769 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl511,500,669 - 11,614,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha511,551,610 - 11,690,824 (-)NCBI
ROS_Cfam_1.0511,446,452 - 11,586,409 (-)NCBI
ROS_Cfam_1.0 Ensembl511,447,895 - 11,586,395 (-)Ensembl
UMICH_Zoey_3.1511,549,978 - 11,689,276 (-)NCBI
UNSW_CanFamBas_1.0511,488,972 - 11,628,138 (-)NCBI
UU_Cfam_GSD_1.0511,527,189 - 11,666,755 (-)NCBI
Ubash3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947104,304,260 - 104,451,965 (+)NCBI
SpeTri2.0NW_0049365427,225,387 - 7,370,163 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBASH3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,630,793 - 49,770,923 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,630,678 - 49,772,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2954,975,101 - 55,118,054 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBASH3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,053,792 - 114,218,909 (+)NCBIChlSab1.1chlSab2
ChlSab1.11114,053,792 - 114,218,909 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,054,384 - 114,218,912 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604311,913,397 - 12,072,484 (-)NCBIVero_WHO_p1.0
Ubash3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248802,269,247 - 2,427,531 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
BB125008  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,013,699 - 41,013,808UniSTSGRCm38
MGSCv37940,821,782 - 40,821,891UniSTSGRCm37
Celera938,241,195 - 38,241,304UniSTS
Cytogenetic Map9A5.1UniSTS
Whitehead/MRC_RH9440.6UniSTS
D9Mit286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,121,479 - 41,121,586UniSTSGRCm38
MGSCv37940,929,562 - 40,929,669UniSTSGRCm37
Celera938,348,158 - 38,348,247UniSTS
Cytogenetic Map9A5.1UniSTS
cM Map923.0UniSTS
Whitehead Genetic917.5UniSTS
Whitehead/MRC_RH9460.98UniSTS
Whitehead_YAC9 UniSTS
UniSTS:236100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,014,183 - 41,014,450UniSTSGRCm38
MGSCv37940,822,266 - 40,822,533UniSTSGRCm37
Celera938,241,681 - 38,241,948UniSTS
Cytogenetic Map9A5.1UniSTS
UniSTS:236101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,014,761 - 41,014,966UniSTSGRCm38
MGSCv37940,822,844 - 40,823,049UniSTSGRCm37
Celera938,242,262 - 38,242,467UniSTS
Cytogenetic Map9A5.1UniSTS
AU049662  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,110,654 - 41,110,854UniSTSGRCm38
MGSCv37940,918,737 - 40,918,937UniSTSGRCm37
Celera938,336,271 - 38,336,443UniSTS
Celera938,334,335 - 38,334,553UniSTS
Cytogenetic Map9A5.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13504833Bglu19_mblood glucose level 19 (mouse)9999947243999472Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91245867446458818Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91347987947479879Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91550045549500594Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91550045549500594Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91550045549500594Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91550045549500594Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91583833149838331Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91583833149838331Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91583833149838331Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91610000050100000Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91610000050100000Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91679834550798345Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91706754451067647Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined92003211054032229Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92024206654242196Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92039490154395074Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92039490154395074Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92039490154395074Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92039490154395074Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92094144454941444Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92567618959676285Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92567618959676285Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92567618959676285Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92567618959676285Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92859203741888030Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93419332342853570Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93682494749509211Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93703211050199840Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93724206644340026Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94050829851897370Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94073407848440176Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2027
Count of miRNA genes:813
Interacting mature miRNAs:1037
Transcripts:ENSMUST00000044155, ENSMUST00000124819, ENSMUST00000129906, ENSMUST00000132996, ENSMUST00000136530, ENSMUST00000151485
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB075602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044155   ⟹   ENSMUSP00000043865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,922,394 - 41,069,358 (-)Ensembl
GRCm38.p6 Ensembl941,011,098 - 41,158,062 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124819
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,822 - 41,072,816 (-)Ensembl
GRCm38.p6 Ensembl941,050,526 - 41,161,520 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129906   ⟹   ENSMUSP00000134923
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,908 - 41,072,984 (-)Ensembl
GRCm38.p6 Ensembl941,050,612 - 41,161,688 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl941,071,142 - 41,072,993 (-)Ensembl
GRCm38.p6 Ensembl941,159,846 - 41,161,697 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136530   ⟹   ENSMUSP00000114176
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,850 - 41,068,798 (-)Ensembl
GRCm38.p6 Ensembl941,050,554 - 41,157,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151485   ⟹   ENSMUSP00000116038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,926,017 - 40,990,802 (-)Ensembl
GRCm38.p6 Ensembl941,014,721 - 41,079,506 (-)Ensembl
RefSeq Acc Id: NM_001357412   ⟹   NP_001344341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,924,922 - 40,990,802 (-)NCBI
GRCm38941,013,626 - 41,079,506 (-)NCBI
Sequence:
RefSeq Acc Id: NM_176860   ⟹   NP_789830
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,924,922 - 41,069,358 (-)NCBI
GRCm38941,013,626 - 41,158,062 (-)NCBI
MGSCv37940,821,724 - 40,965,577 (-)RGD
Celera938,241,137 - 38,383,815 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510632   ⟹   XP_006510695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 41,069,353 (-)NCBI
GRCm38941,010,760 - 41,158,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510636   ⟹   XP_006510699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 41,068,784 (-)NCBI
GRCm38941,010,760 - 41,157,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313612   ⟹   XP_017169101
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 40,971,344 (-)NCBI
GRCm38941,010,760 - 41,060,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244638   ⟹   XP_030100498
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 40,964,616 (-)NCBI
GRCm38941,010,760 - 41,053,320 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_789830   ⟸   NM_176860
- Peptide Label: isoform 1
- UniProtKB: Q8BGG7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510695   ⟸   XM_006510632
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510699   ⟸   XM_006510636
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169101   ⟸   XM_017313612
- Peptide Label: isoform X3
- UniProtKB: Q8BGG7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100498   ⟸   XM_030244638
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001344341   ⟸   NM_001357412
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000116038   ⟸   ENSMUST00000151485
RefSeq Acc Id: ENSMUSP00000134923   ⟸   ENSMUST00000129906
RefSeq Acc Id: ENSMUSP00000043865   ⟸   ENSMUST00000044155
RefSeq Acc Id: ENSMUSP00000114176   ⟸   ENSMUST00000136530
Protein Domains
SH3   UBA

Promoters
RGD ID:6845295
Promoter ID:MM_KWN:57019
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000063836
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,887,736 - 40,888,236 (-)MPROMDB
RGD ID:6845298
Promoter ID:MM_KWN:57020
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000063835,   OTTMUST00000063840
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,965,556 - 40,966,517 (-)MPROMDB
RGD ID:6845296
Promoter ID:MM_KWN:57021
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000063837,   OTTMUST00000063838,   OTTMUST00000063839
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,969,376 - 40,969,876 (-)MPROMDB
RGD ID:8669304
Promoter ID:EPDNEW_M12683
Type:initiation region
Name:Ubash3b_1
Description:Mus musculus ubiquitin associated and SH3 domain containing,B , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38941,157,494 - 41,157,554EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920078 AgrOrtholog
Ensembl Genes ENSMUSG00000032020 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000043865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114176 UniProtKB/TrEMBL
  ENSMUSP00000116038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134923 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044155 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000129906 UniProtKB/TrEMBL
  ENSMUST00000136530 UniProtKB/TrEMBL
  ENSMUST00000151485 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1240 UniProtKB/Swiss-Prot
InterPro His_Pase_superF_clade-1 UniProtKB/Swiss-Prot
  His_PPase_superfam UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBASH3B_SH3 UniProtKB/Swiss-Prot
KEGG Report mmu:72828 UniProtKB/Swiss-Prot
MGD MGI:1920078 ENTREZGENE
NCBI Gene 72828 ENTREZGENE
Pfam His_Phos_1 UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
PhenoGen Ubash3b PhenoGen
PROSITE SH3 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
SMART SH3 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot
  SSF53254 UniProtKB/Swiss-Prot
UniProt D3YVT5_MOUSE UniProtKB/TrEMBL
  H3BJB9_MOUSE UniProtKB/TrEMBL
  Q8BGG7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U8Z2 UniProtKB/Swiss-Prot
  Q8BMW9 UniProtKB/Swiss-Prot