Trmt1 (tRNA methyltransferase 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Trmt1 (tRNA methyltransferase 1) Mus musculus
Analyze
Symbol: Trmt1
Name: tRNA methyltransferase 1
RGD ID: 1331938
MGI Page MGI
Description: Predicted to have tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TRMT1 (tRNA methyltransferase 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 6720406L13Rik; 6720477L24; D8Ertd812; D8Ertd812e; N(2),N(2)-dimethylguanosine tRNA methyltransferase; TRM1 tRNA methyltransferase 1 homolog; tRNA (guanine(26)-N(2))-dimethyltransferase; tRNA 2,2-dimethylguanosine-26 methyltransferase; tRNA(guanine-26,N(2)-N(2)) methyltransferase; tRNA(m(2,2)G26)dimethyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,412,953 - 85,426,437 (+)NCBIGRCm39mm39
GRCm38884,686,324 - 84,699,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,686,307 - 84,699,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,213,146 - 87,223,707 (+)NCBIGRCm37mm9NCBIm37
MGSCv36887,579,383 - 87,589,892 (+)NCBImm8
Celera888,989,136 - 88,999,879 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:27626380   PMID:32325033  


Genomics

Comparative Map Data
Trmt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,412,953 - 85,426,437 (+)NCBIGRCm39mm39
GRCm38884,686,324 - 84,699,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,686,307 - 84,699,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,213,146 - 87,223,707 (+)NCBIGRCm37mm9NCBIm37
MGSCv36887,579,383 - 87,589,892 (+)NCBImm8
Celera888,989,136 - 88,999,879 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.02NCBI
TRMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1913,104,902 - 13,117,567 (-)EnsemblGRCh38hg38GRCh38
GRCh381913,104,907 - 13,116,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,215,714 - 13,227,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,076,715 - 13,088,332 (-)NCBINCBI36hg18NCBI36
Celera1913,106,119 - 13,117,969 (-)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1912,788,354 - 12,799,966 (-)NCBIHuRef
CHM1_11913,216,745 - 13,228,558 (-)NCBICHM1_1
Trmt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,798,262 - 25,813,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,803,262 - 25,813,467 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,775,694 - 36,789,077 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,119,864 - 25,130,026 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,124,689 - 25,134,852 (-)NCBI
Celera1923,010,440 - 23,020,602 (-)NCBICelera
Cytogenetic Map19q11NCBI
Trmt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,126,444 - 32,135,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,126,630 - 32,136,770 (-)NCBIChiLan1.0ChiLan1.0
LOC100991487
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X145,052,491 - 145,054,526 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X134,674,474 - 134,676,801 (+)NCBIMhudiblu_PPA_v0panPan3
TRMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2049,101,158 - 49,108,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12049,100,794 - 49,108,734 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Trmt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366592,142,151 - 2,149,373 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,940,123 - 65,949,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,940,122 - 65,949,324 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,237,279 - 66,245,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl611,785,730 - 11,799,730 (-)Ensembl
ChlSab1.1611,786,279 - 11,799,270 (-)NCBI
Trmt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624901650,444 - 659,921 (-)NCBI

Position Markers
D8Ertd812e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,695,575 - 84,695,786UniSTSGRCm38
MGSCv37887,219,474 - 87,219,685UniSTSGRCm37
Celera888,995,643 - 88,995,854UniSTS
Cytogenetic Map8C3UniSTS
cM Map839.0UniSTS
D19S694E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,689,759 - 84,689,867UniSTSGRCm38
MGSCv37887,213,658 - 87,213,766UniSTSGRCm37
Celera888,989,648 - 88,989,756UniSTS
Cytogenetic Map8C3UniSTS
cM Map839.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5024
Count of miRNA genes:890
Interacting mature miRNAs:1220
Transcripts:ENSMUST00000001974, ENSMUST00000077990, ENSMUST00000109767, ENSMUST00000109768, ENSMUST00000125370, ENSMUST00000127915, ENSMUST00000128022, ENSMUST00000128537, ENSMUST00000131700, ENSMUST00000136423, ENSMUST00000137953, ENSMUST00000138300, ENSMUST00000143427, ENSMUST00000148118, ENSMUST00000150085, ENSMUST00000152301, ENSMUST00000175704, ENSMUST00000175767, ENSMUST00000175784, ENSMUST00000175870, ENSMUST00000175884, ENSMUST00000175980, ENSMUST00000176053, ENSMUST00000176914, ENSMUST00000177084, ENSMUST00000177260, ENSMUST00000177286, ENSMUST00000177364, ENSMUST00000177423, ENSMUST00000177531
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC145556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB055133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB579502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB841866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN528783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000001974   ⟹   ENSMUSP00000001974
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,688,866 - 84,699,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000077990
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,289 - 84,692,047 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109767   ⟹   ENSMUSP00000105389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,247 - 84,699,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109768   ⟹   ENSMUSP00000105390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,264 - 84,699,786 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125370   ⟹   ENSMUSP00000135510
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,464 - 84,699,785 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,283 - 84,691,228 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128022
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,690,389 - 84,697,131 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128537
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,257 - 84,691,370 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131700   ⟹   ENSMUSP00000122526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,269 - 84,696,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136423   ⟹   ENSMUSP00000134723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,698,398 - 84,699,786 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,283 - 84,699,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138300
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,696,843 - 84,697,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143427   ⟹   ENSMUSP00000117140
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,286 - 84,695,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,694,922 - 84,697,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150085
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,284 - 84,690,811 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152301   ⟹   ENSMUSP00000116712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,272 - 84,695,301 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,697,321 - 84,697,954 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,699,071 - 84,699,786 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175784   ⟹   ENSMUSP00000135273
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,477 - 84,695,239 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175870
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,286 - 84,690,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175884   ⟹   ENSMUSP00000135680
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,697,115 - 84,698,261 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175980
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,686,307 - 84,690,936 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,257 - 84,690,739 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176914
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,686,319 - 84,687,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177084   ⟹   ENSMUSP00000135675
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,257 - 84,695,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,699,181 - 84,699,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177286
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,632 - 84,695,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177364
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,285 - 84,689,974 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177423   ⟹   ENSMUSP00000135327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,689,286 - 84,695,473 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177531   ⟹   ENSMUSP00000135540
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,686,339 - 84,691,322 (+)Ensembl
RefSeq Acc Id: NM_001164559   ⟹   NP_001158031
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,876 - 85,426,437 (+)NCBI
GRCm38884,689,247 - 84,699,808 (+)NCBI
MGSCv37887,213,146 - 87,223,707 (+)RGD
Celera888,989,136 - 88,999,879 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164560   ⟹   NP_001158032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,876 - 85,426,437 (+)NCBI
GRCm38884,689,247 - 84,699,808 (+)NCBI
MGSCv37887,213,146 - 87,223,707 (+)RGD
Celera888,989,136 - 88,999,879 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364175   ⟹   NP_001351104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,913 - 85,426,437 (+)NCBI
GRCm38884,689,284 - 84,699,808 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364176   ⟹   NP_001351105
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,412,953 - 85,426,437 (+)NCBI
GRCm38884,686,324 - 84,699,808 (+)NCBI
Sequence:
RefSeq Acc Id: NM_198020   ⟹   NP_932137
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,876 - 85,426,437 (+)NCBI
GRCm38884,689,247 - 84,699,808 (+)NCBI
MGSCv37887,213,146 - 87,223,707 (+)RGD
Celera888,989,136 - 88,999,879 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530811   ⟹   XP_006530874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,891 - 85,426,416 (+)NCBI
GRCm38884,689,262 - 84,699,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530812   ⟹   XP_006530875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,901 - 85,426,416 (+)NCBI
GRCm38884,689,273 - 84,699,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530813   ⟹   XP_006530876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,903 - 85,426,416 (+)NCBI
GRCm38884,689,274 - 84,699,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530815   ⟹   XP_006530878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,416,271 - 85,426,416 (+)NCBI
GRCm38884,689,642 - 84,699,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243401   ⟹   XP_030099261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,868 - 85,426,416 (+)NCBI
GRCm38884,689,280 - 84,699,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153862   ⟹   XP_036009755
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,901 - 85,426,416 (+)NCBI
RefSeq Acc Id: XM_036153863   ⟹   XP_036009756
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,923 - 85,426,416 (+)NCBI
RefSeq Acc Id: XR_001778420
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,414,735 - 85,426,416 (+)NCBI
GRCm38884,687,974 - 84,699,150 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778423
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,414,735 - 85,425,779 (+)NCBI
GRCm38884,687,974 - 84,699,150 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934789
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,868 - 85,426,416 (+)NCBI
RefSeq Acc Id: XR_004934790
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,414,735 - 85,426,380 (+)NCBI
RefSeq Acc Id: XR_004934791
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,414,735 - 85,426,416 (+)NCBI
RefSeq Acc Id: XR_004934792
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,414,735 - 85,426,380 (+)NCBI
RefSeq Acc Id: XR_004934793
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,415,908 - 85,426,416 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_932137   ⟸   NM_198020
- Peptide Label: isoform 1
- UniProtKB: Q3TX08 (UniProtKB/Swiss-Prot),   A0A0R4IZW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158031   ⟸   NM_001164559
- Peptide Label: isoform 1
- UniProtKB: Q3TX08 (UniProtKB/Swiss-Prot),   A0A0R4IZW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158032   ⟸   NM_001164560
- Peptide Label: isoform 2
- UniProtKB: Q3TX08 (UniProtKB/Swiss-Prot),   E9PWD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530874   ⟸   XM_006530811
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006530875   ⟸   XM_006530812
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530876   ⟸   XM_006530813
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530878   ⟸   XM_006530815
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001351105   ⟸   NM_001364176
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030099261   ⟸   XM_030243401
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001351104   ⟸   NM_001364175
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000135510   ⟸   ENSMUST00000125370
RefSeq Acc Id: ENSMUSP00000117140   ⟸   ENSMUST00000143427
RefSeq Acc Id: ENSMUSP00000135675   ⟸   ENSMUST00000177084
RefSeq Acc Id: ENSMUSP00000135327   ⟸   ENSMUST00000177423
RefSeq Acc Id: ENSMUSP00000135540   ⟸   ENSMUST00000177531
RefSeq Acc Id: ENSMUSP00000116712   ⟸   ENSMUST00000152301
RefSeq Acc Id: ENSMUSP00000122526   ⟸   ENSMUST00000131700
RefSeq Acc Id: ENSMUSP00000105389   ⟸   ENSMUST00000109767
RefSeq Acc Id: ENSMUSP00000105390   ⟸   ENSMUST00000109768
RefSeq Acc Id: ENSMUSP00000001974   ⟸   ENSMUST00000001974
RefSeq Acc Id: ENSMUSP00000135680   ⟸   ENSMUST00000175884
RefSeq Acc Id: ENSMUSP00000134723   ⟸   ENSMUST00000136423
RefSeq Acc Id: ENSMUSP00000135273   ⟸   ENSMUST00000175784
RefSeq Acc Id: XP_036009755   ⟸   XM_036153862
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036009756   ⟸   XM_036153863
- Peptide Label: isoform X3
Protein Domains
C3H1-type   Trm1 methyltransferase

Promoters
RGD ID:8667677
Promoter ID:EPDNEW_M11870
Type:multiple initiation site
Name:Trmt1_1
Description:Mus musculus tRNA methyltransferase 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,689,283 - 84,689,343EPDNEW
RGD ID:6848356
Promoter ID:MM_ACW:48234
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:TRMT1.HSEP07,   TRMT1.VBSEP07,   TRMT1.VESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,210,024 - 87,210,524 (+)MPROMDB
RGD ID:6843841
Promoter ID:MM_KWN:55082
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000077990,   NM_001164559,   NM_001164560,   NM_198020,   OTTMUST00000052688,   OTTMUST00000052689,   OTTMUST00000052691,   OTTMUST00000052692,   OTTMUST00000052693,   OTTMUST00000052694,   OTTMUST00000052695,   OTTMUST00000052696
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,212,891 - 87,213,391 (+)MPROMDB
RGD ID:6843844
Promoter ID:MM_KWN:55083
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   MEF_B6
Transcripts:OTTMUST00000052698,   UC009MMZ.1,   UC009MNA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,213,356 - 87,214,462 (+)MPROMDB
RGD ID:6843842
Promoter ID:MM_KWN:55084
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Lung,   MEF_B6
Transcripts:OTTMUST00000052699
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,218,241 - 87,219,272 (+)MPROMDB
RGD ID:6843845
Promoter ID:MM_KWN:55085
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000052700
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,219,906 - 87,221,227 (+)MPROMDB
RGD ID:6843843
Promoter ID:MM_KWN:55086
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   Brain,   Kidney,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000052697
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,221,331 - 87,222,607 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289155 AgrOrtholog
Ensembl Genes ENSMUSG00000001909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000001974 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105389 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105390 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000116712 UniProtKB/TrEMBL
  ENSMUSP00000117140 UniProtKB/TrEMBL
  ENSMUSP00000122526 UniProtKB/TrEMBL
  ENSMUSP00000134723 UniProtKB/TrEMBL
  ENSMUSP00000135273 UniProtKB/TrEMBL
  ENSMUSP00000135327 UniProtKB/TrEMBL
  ENSMUSP00000135510 UniProtKB/TrEMBL
  ENSMUSP00000135540 UniProtKB/TrEMBL
  ENSMUSP00000135675 UniProtKB/TrEMBL
  ENSMUSP00000135680 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001974 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109767 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000109768 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000125370 UniProtKB/TrEMBL
  ENSMUST00000131700 UniProtKB/TrEMBL
  ENSMUST00000136423 UniProtKB/TrEMBL
  ENSMUST00000143427 UniProtKB/TrEMBL
  ENSMUST00000152301 UniProtKB/TrEMBL
  ENSMUST00000175784 UniProtKB/TrEMBL
  ENSMUST00000175884 UniProtKB/TrEMBL
  ENSMUST00000177084 UniProtKB/TrEMBL
  ENSMUST00000177423 UniProtKB/TrEMBL
  ENSMUST00000177531 UniProtKB/TrEMBL
Gene3D-CATH 3.30.56.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trm1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_met_Trm1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:212528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1289155 ENTREZGENE
NCBI Gene 212528 ENTREZGENE
PANTHER PTHR10631 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trmt1 PhenoGen
PROSITE SAM_MT_TRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs TRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.275720 ENTREZGENE
UniProt A0A0R4IZW7 ENTREZGENE, UniProtKB/TrEMBL
  D3Z413_MOUSE UniProtKB/TrEMBL
  D6RFC0_MOUSE UniProtKB/TrEMBL
  D6RG86_MOUSE UniProtKB/TrEMBL
  E9PWD4 ENTREZGENE, UniProtKB/TrEMBL
  G3V019_MOUSE UniProtKB/TrEMBL
  H3BK68_MOUSE UniProtKB/TrEMBL
  H3BKB8_MOUSE UniProtKB/TrEMBL
  H3BKS8_MOUSE UniProtKB/TrEMBL
  H3BKV3_MOUSE UniProtKB/TrEMBL
  H3BL70_MOUSE UniProtKB/TrEMBL
  H3BL74_MOUSE UniProtKB/TrEMBL
  Q3TD26_MOUSE UniProtKB/TrEMBL
  Q3TX08 ENTREZGENE
  Q8R2M8_MOUSE UniProtKB/TrEMBL
  TRM1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TBY4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Trmt1  tRNA methyltransferase 1    TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED