Nabp2 (nucleic acid binding protein 2) - Rat Genome Database

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Gene: Nabp2 (nucleic acid binding protein 2) Mus musculus
Analyze
Symbol: Nabp2
Name: nucleic acid binding protein 2
RGD ID: 1331927
MGI Page MGI
Description: Predicted to enable DNA polymerase binding activity and G-rich strand telomeric DNA binding activity. Involved in DNA repair and positive regulation of telomere capping. Located in chromosome, telomeric region. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human NABP2 (nucleic acid binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610036N15Rik; MGC30353; Na; nucleic acid-binding protein 2; Obfc2; Obfc2b; oligonucleotide/oligosaccharide-binding fold containing 2B; oligonucleotide/oligosaccharide-binding fold-containing protein 2B; sensor of single-strand DNA complex subunit B1; sensor of ssDNA subunit B1; single-stranded DNA-binding protein 1; SOSS complex subunit B1; SOSS-B1; SS; SSB1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,237,263 - 128,247,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,237,264 - 128,247,361 (-)EnsemblGRCm39 Ensembl
GRCm3810128,401,394 - 128,411,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,401,395 - 128,411,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,838,451 - 127,846,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,804,344 - 127,812,745 (-)NCBIMGSCv36mm8
Celera10130,789,654 - 130,798,110 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal autopod morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bone structure  (IAGP)
abnormal cartilage development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal deltoid tuberosity morphology  (IAGP)
abnormal embryo size  (IEA)
abnormal forelimb morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal limb development  (IAGP)
abnormal limb morphology  (IEA)
abnormal lung development  (IAGP)
abnormal male germ cell apoptosis  (IAGP)
abnormal male germ cell morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal pulmonary alveolus wall morphology  (IAGP)
abnormal rib development  (IAGP)
abnormal rib joint morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal scapular spine morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal small intestine morphology  (IAGP)
abnormal snout morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal telomere morphology  (IAGP)
abnormal thoracic cage morphology  (IAGP)
abnormal thoracic cage shape  (IAGP)
abnormal tympanic ring morphology  (IAGP)
abnormal type II pneumocyte morphology  (IAGP)
absent deltoid tuberosity  (IAGP)
absent fibula  (IAGP)
chromosomal instability  (IAGP)
cleft palate  (IAGP)
decreased birth body size  (IAGP)
decreased body length  (IAGP)
decreased bone volume  (IAGP)
decreased fetal weight  (IAGP)
decreased length of long bones  (IAGP)
decreased litter size  (IAGP)
decreased testis weight  (IAGP)
edema  (IEA)
fetal growth retardation  (IAGP)
hindlimb oligodactyly  (IAGP)
increased B cell derived lymphoma incidence  (IAGP)
increased cellular sensitivity to ionizing radiation  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased hepatocellular carcinoma incidence  (IAGP)
increased leukemia incidence  (IAGP)
increased lymphoma incidence  (IAGP)
increased mortality induced by gamma-irradiation  (IAGP)
increased mortality induced by ionizing radiation  (IAGP)
increased spleen red pulp amount  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased thymocyte apoptosis  (IAGP)
increased tumor incidence  (IAGP)
mandible hypoplasia  (IAGP)
micrognathia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
oligozoospermia  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
primary atelectasis  (IAGP)
reduced male fertility  (IAGP)
respiratory distress  (IAGP)
short femur  (IAGP)
short humerus  (IAGP)
short radius  (IAGP)
short scapula  (IAGP)
short tibia  (IAGP)
short ulna  (IAGP)
small testis  (IAGP)
small thoracic cage  (IAGP)
testis degeneration  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15741512   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16533169  
PMID:18495661   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22940690   PMID:23408915   PMID:23459151   PMID:24194600   PMID:24569637   PMID:25589350   PMID:25915473   PMID:27626380  
PMID:28270450   PMID:31085591  


Genomics

Comparative Map Data
Nabp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,237,263 - 128,247,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,237,264 - 128,247,361 (-)EnsemblGRCm39 Ensembl
GRCm3810128,401,394 - 128,411,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,401,395 - 128,411,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710127,838,451 - 127,846,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,804,344 - 127,812,745 (-)NCBIMGSCv36mm8
Celera10130,789,654 - 130,798,110 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
NABP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,222,015 - 56,229,854 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,222,015 - 56,229,854 (+)EnsemblGRCh38hg38GRCh38
GRCh371256,618,126 - 56,623,638 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,904,774 - 54,909,795 (+)NCBINCBI36Build 36hg18NCBI36
Celera1256,271,047 - 56,276,531 (+)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,657,113 - 53,662,632 (+)NCBIHuRef
CHM1_11256,585,507 - 56,591,029 (+)NCBICHM1_1
T2T-CHM13v2.01256,189,608 - 56,197,479 (+)NCBIT2T-CHM13v2.0
Nabp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,415,491 - 1,421,113 (-)NCBIGRCr8
mRatBN7.27830,949 - 836,551 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7830,949 - 838,027 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,592,698 - 3,598,487 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,468,679 - 5,474,468 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,766,472 - 5,772,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,820,006 - 2,825,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,820,007 - 2,825,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,798,470 - 2,805,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,693,100 - 1,698,698 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,693,101 - 1,700,198 (-)NCBI
Celera7704,441 - 710,047 (-)NCBICelera
Cytogenetic Map7q11NCBI
Nabp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,835,205 - 3,840,634 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,835,205 - 3,836,841 (+)NCBIChiLan1.0ChiLan1.0
NABP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,102,226 - 38,110,124 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,098,994 - 38,106,892 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,685,521 - 32,693,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,937,021 - 32,944,754 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,937,017 - 32,944,754 (-)Ensemblpanpan1.1panPan2
NABP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110546,964 - 551,360 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10546,964 - 551,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10610,252 - 614,763 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010555,475 - 559,986 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10555,497 - 559,985 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110532,929 - 537,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010775,919 - 780,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010899,977 - 904,490 (+)NCBIUU_Cfam_GSD_1.0
Nabp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,231,335 - 58,237,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646632,121 - 639,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646632,390 - 638,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NABP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,624,762 - 21,631,706 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,624,654 - 21,631,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,036,416 - 23,043,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NABP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,176,021 - 52,183,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,177,987 - 52,182,572 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,803,203 - 193,810,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nabp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,774,237 - 11,780,250 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,774,237 - 11,780,822 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nabp2
312 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1631
Count of miRNA genes:490
Interacting mature miRNAs:578
Transcripts:ENSMUST00000026439, ENSMUST00000164199, ENSMUST00000164664, ENSMUST00000166608, ENSMUST00000167456, ENSMUST00000171370, ENSMUST00000171494, ENSMUST00000172238, ENSMUST00000172348
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE988804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX519720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY250791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX238225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ158906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000026439   ⟹   ENSMUSP00000026439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,264 - 128,245,743 (-)Ensembl
GRCm38.p6 Ensembl10128,401,395 - 128,409,874 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164199   ⟹   ENSMUSP00000128634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,264 - 128,245,597 (-)Ensembl
GRCm38.p6 Ensembl10128,401,395 - 128,409,728 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164664   ⟹   ENSMUSP00000127605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,779 - 128,246,420 (-)Ensembl
GRCm38.p6 Ensembl10128,401,910 - 128,410,551 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166608   ⟹   ENSMUSP00000131171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,343 - 128,245,591 (-)Ensembl
GRCm38.p6 Ensembl10128,401,474 - 128,409,722 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,459 - 128,244,712 (-)Ensembl
GRCm38.p6 Ensembl10128,401,590 - 128,408,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171370   ⟹   ENSMUSP00000127436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,244,616 - 128,245,605 (-)Ensembl
GRCm38.p6 Ensembl10128,408,747 - 128,409,736 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171494   ⟹   ENSMUSP00000126842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,244,588 - 128,247,361 (-)Ensembl
GRCm38.p6 Ensembl10128,408,719 - 128,411,492 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172238   ⟹   ENSMUSP00000130608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,244,032 - 128,245,049 (-)Ensembl
GRCm38.p6 Ensembl10128,408,163 - 128,409,180 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172348   ⟹   ENSMUSP00000127015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,237,769 - 128,245,501 (-)Ensembl
GRCm38.p6 Ensembl10128,401,900 - 128,409,632 (-)Ensembl
RefSeq Acc Id: NM_001358972   ⟹   NP_001345901
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,264 - 128,246,420 (-)NCBI
GRCm3810128,401,395 - 128,410,551 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358973   ⟹   NP_001345902
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,264 - 128,245,049 (-)NCBI
GRCm3810128,401,395 - 128,409,180 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027257   ⟹   NP_081533
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,264 - 128,245,719 (-)NCBI
GRCm3810128,401,395 - 128,409,850 (-)NCBI
MGSCv3710127,838,451 - 127,846,852 (-)RGD
Celera10130,789,654 - 130,798,110 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514066   ⟹   XP_006514129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,263 - 128,245,683 (-)NCBI
GRCm3810128,401,394 - 128,409,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514067   ⟹   XP_006514130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,263 - 128,247,426 (-)NCBI
GRCm3810128,401,394 - 128,411,548 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245253   ⟹   XP_030101113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,263 - 128,245,587 (-)NCBI
GRCm3810128,401,394 - 128,409,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245254   ⟹   XP_030101114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,263 - 128,245,080 (-)NCBI
GRCm3810128,401,394 - 128,409,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155988   ⟹   XP_036011881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,237,263 - 128,247,360 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081533   ⟸   NM_027257
- Peptide Label: isoform 1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514130   ⟸   XM_006514067
- Peptide Label: isoform X1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514129   ⟸   XM_006514066
- Peptide Label: isoform X1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101113   ⟸   XM_030245253
- Peptide Label: isoform X1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101114   ⟸   XM_030245254
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001345901   ⟸   NM_001358972
- Peptide Label: isoform 1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345902   ⟸   NM_001358973
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000127605   ⟸   ENSMUST00000164664
RefSeq Acc Id: ENSMUSP00000128634   ⟸   ENSMUST00000164199
RefSeq Acc Id: ENSMUSP00000026439   ⟸   ENSMUST00000026439
RefSeq Acc Id: ENSMUSP00000130608   ⟸   ENSMUST00000172238
RefSeq Acc Id: ENSMUSP00000127015   ⟸   ENSMUST00000172348
RefSeq Acc Id: ENSMUSP00000131171   ⟸   ENSMUST00000166608
RefSeq Acc Id: ENSMUSP00000126842   ⟸   ENSMUST00000171494
RefSeq Acc Id: ENSMUSP00000127436   ⟸   ENSMUST00000171370
RefSeq Acc Id: XP_036011881   ⟸   XM_036155988
- Peptide Label: isoform X1
- UniProtKB: Q8R2Y9 (UniProtKB/Swiss-Prot),   E9Q199 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R2Y9-F1-model_v2 AlphaFold Q8R2Y9 1-212 view protein structure

Promoters
RGD ID:6819688
Promoter ID:MM_KWN:5993
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027257
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,846,731 - 127,847,792 (-)MPROMDB
RGD ID:8673612
Promoter ID:EPDNEW_M14837
Type:initiation region
Name:Nabp2_1
Description:Mus musculus nucleic acid binding protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,409,799 - 128,409,859EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917167 AgrOrtholog
Ensembl Genes ENSMUSG00000025374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026439 ENTREZGENE
  ENSMUST00000026439.14 UniProtKB/Swiss-Prot
  ENSMUST00000164199 ENTREZGENE
  ENSMUST00000164199.8 UniProtKB/Swiss-Prot
  ENSMUST00000164664.8 UniProtKB/TrEMBL
  ENSMUST00000166608.8 UniProtKB/TrEMBL
  ENSMUST00000171370.2 UniProtKB/TrEMBL
  ENSMUST00000171494.8 UniProtKB/TrEMBL
  ENSMUST00000172238.2 UniProtKB/TrEMBL
  ENSMUST00000172348.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ssb-like_OB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69917 UniProtKB/Swiss-Prot
MGD MGI:1917167 ENTREZGENE
NCBI Gene 69917 ENTREZGENE
PANTHER OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOSS COMPLEX SUBUNIT B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ssb-like_OB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nabp2 PhenoGen
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PV68_MOUSE UniProtKB/TrEMBL
  E9PW70_MOUSE UniProtKB/TrEMBL
  E9Q199 ENTREZGENE, UniProtKB/TrEMBL
  E9Q1I2_MOUSE UniProtKB/TrEMBL
  E9Q2V9_MOUSE UniProtKB/TrEMBL
  E9Q5F7_MOUSE UniProtKB/TrEMBL
  Q8R2Y9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-19 Nabp2  nucleic acid binding protein 2  Obfc2b  oligonucleotide/oligosaccharide-binding fold containing 2B  Symbol and/or name change 5135510 APPROVED