Rpain (RPA interacting protein) - Rat Genome Database

Name: Rpain
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rpain (RPA interacting protein) Mus musculus

Analyze

Symbol:

Rpain

Name:

RPA interacting protein

RGD ID:

1331906

MGI Page

MGI

Description:

Is expressed in embryo; extraembryonic component; oocyte; primitive endoderm; and yolk sac. Orthologous to human RPAIN (RPA interacting protein); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2400006N03Rik; Rip; RP23-83I13.5; RPA interacting protein delta 2; RPA interacting protein epsilon; RPA-interacting protein

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPAIN (RPA interacting protein)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rpain (RPA interacting protein)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rpain (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPAIN (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPAIN (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpain (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPAIN (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RPAIN (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpain (RPA interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rpain (RPA interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	RPAIN (RPA interacting protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	rpain (RPA interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	Ripalpha	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	70,860,403 - 70,868,759 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	70,861,039 - 70,868,659 (+)	Ensembl
GRCm38	11	70,970,130 - 70,977,933 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	70,970,213 - 70,977,833 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	70,783,715 - 70,791,306 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	70,786,408 - 70,793,999 (+)	NCBI			mm8
Celera	11	78,524,615 - 78,532,207 (+)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

carbon nanotube (EXP)

clofibrate (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

indinavir (EXP)

lamivudine (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

paracetamol (EXP)

pirinixic acid (EXP,ISO)

saquinavir (EXP)

SB 431542 (ISO)

sodium arsenate (EXP)

titanium dioxide (EXP)

tungsten (EXP)

valproic acid (ISO)

vinclozolin (ISO)

vincristine (ISO)

zidovudine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA recombination (ISO)

DNA repair (ISO)

DNA-dependent DNA replication (ISO)

protein import into nucleus (IBA,ISO)

response to UV (ISO)

Cellular Component

cytoplasm (ISO)

fibrillar center (ISO)

nucleoplasm (ISO)

nucleus (IBA)

PML body (IBA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

protein-containing complex binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal neural tube morphology (IEA)

decreased grip strength (IEA)

decreased trophectoderm cell proliferation (IEA)

embryonic lethality between implantation and somite formation, complete penetrance (IEA)

embryonic lethality prior to organogenesis (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	MGD and Homologene mouse data transfer
2.	MGD data from the GO Consortium
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15489334	PMID:16135809	PMID:16141072	PMID:16141073	PMID:18799693
PMID:19192389	PMID:21873635

Genomics

Comparative Map Data

Rpain
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	70,860,403 - 70,868,759 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	70,861,039 - 70,868,659 (+)	Ensembl
GRCm38	11	70,970,130 - 70,977,933 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	70,970,213 - 70,977,833 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	70,783,715 - 70,791,306 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	70,786,408 - 70,793,999 (+)	NCBI			mm8
Celera	11	78,524,615 - 78,532,207 (+)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI

RPAIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	5,419,641 - 5,432,877 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	17	5,419,641 - 5,432,876 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	5,420,167 - 5,432,879 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	5,323,502 - 5,336,197 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	5,263,685 - 5,276,920 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	17	5,339,333 - 5,352,712 (+)	NCBI
Cytogenetic Map	17	p13.2	NCBI
HuRef	17	5,213,488 - 5,226,867 (+)	NCBI		HuRef
CHM1_1	17	5,332,606 - 5,345,985 (+)	NCBI		CHM1_1

Rpain
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	55,692,410 - 55,699,910 (+)	NCBI
Rnor_6.0 Ensembl	10	57,606,650 - 57,613,747 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	57,606,287 - 57,613,834 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	57,351,523 - 57,359,044 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	57,874,557 - 57,881,526 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	57,887,893 - 57,895,355 (+)	NCBI
Celera	10	54,838,418 - 54,845,387 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Rpain
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	10,780,910 - 10,792,668 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	10,780,818 - 10,788,137 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPAIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	5,460,277 - 5,473,568 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	5,460,277 - 5,473,568 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	5,467,978 - 5,481,219 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RPAIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	31,358,594 - 31,365,971 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	31,359,735 - 31,366,108 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rpain
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936677	2,376,666 - 2,384,856 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPAIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	51,553,130 - 51,562,743 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	51,553,130 - 51,562,419 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RPAIN
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	4,829,096 - 4,843,302 (+)	NCBI
ChlSab1.1 Ensembl	16	4,829,248 - 4,846,415 (+)	Ensembl

Rpain
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	9,231,882 - 9,239,201 (+)	NCBI

Position Markers

RH126506

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	70,977,861 - 70,978,110	UniSTS	GRCm38
MGSCv37	11	70,791,363 - 70,791,612	UniSTS	GRCm37
Celera	11	78,532,264 - 78,532,513	UniSTS
Cytogenetic Map	11	B4	UniSTS
cM Map	11	37.0	UniSTS
Whitehead/MRC_RH	11	904.75	UniSTS

AA407679

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	70,977,937 - 70,978,080	UniSTS	GRCm38
MGSCv37	11	70,791,439 - 70,791,582	UniSTS	GRCm37
Celera	11	78,532,340 - 78,532,483	UniSTS
Cytogenetic Map	11	B4	UniSTS
cM Map	11	37.0	UniSTS
Whitehead/MRC_RH	11	904.85	UniSTS
Whitehead/MRC_RH	11	904.75	UniSTS

D11Wsu182e

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	70,977,879 - 70,978,113	UniSTS	GRCm38
MGSCv37	11	70,791,381 - 70,791,615	UniSTS	GRCm37
Celera	11	78,532,282 - 78,532,516	UniSTS
Cytogenetic Map	11	B4	UniSTS
cM Map	11	37.0	UniSTS
cM Map	11	40.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3300000	72800000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
4141853	Skmw17_m	skeletal muscle weight 17 (mouse)			Not determined		11	37190115	71190238	Mouse
10766457	Nwa3_m	New Zealand White autoimmunity 3 (mouse)					11	38125289	72125383	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42365791	76365904	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42365791	76365904	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44739211	76963931	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55394159	72319101	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58599729	74863932	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62700000	109500000	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63428581	81939647	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63428581	94173092	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64939510	98939647	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64939510	98939647	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64939510	98939647	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66842594	100842826	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66842594	100842826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66842594	100842826	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66842594	100842826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67187365	79923086	Mouse
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68300000	102000000	Mouse
36049778	Ars6_m	antibody response to SARS-CoV 6, day 15, IgM (mouse)					11	69100000	72600000	Mouse
36049779	Ars7_m	antibody response to SARS-CoV 7, day 29, IgG1 (mouse)					11	69100000	72600000	Mouse
36049784	Ars8_m	antibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049785	Ars9_m	antibody response to SARS-CoV 9, day 29, IgM (mouse)					11	69100000	72600000	Mouse
36049786	Ars10_m	antibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049787	Ars11_m	antibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)					11	69100000	72600000	Mouse
36049788	Ars1_m	antibody response to SARS-CoV 1, day 7, IgG1 (mouse)					11	69100000	72600000	Mouse
36049789	Ars2_m	antibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049790	Ars3_m	antibody response to SARS-CoV 3, day 7, IgG2b (mouse)					11	69100000	72600000	Mouse
36049791	Ars4_m	antibody response to SARS-CoV 4, day 7, IgG3 (mouse)					11	69100000	72600000	Mouse
36049792	Ars5_m	antibody response to SARS-CoV 5, day 7, IgM (mouse)					11	69100000	72600000	Mouse
35673314	Ari2_m	antibody response to influenza 2, day 10, IgG3 (mouse)					11	69100000	72600000	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70800372	104800540	Mouse
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70800372	104800540	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70800372	104800540	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70800372	104800540	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1476
Count of miRNA genes:	525
Interacting mature miRNAs:	632
Transcripts:	ENSMUST00000018593, ENSMUST00000108529, ENSMUST00000126815, ENSMUST00000129531, ENSMUST00000129540, ENSMUST00000136665, ENSMUST00000146788, ENSMUST00000151608, ENSMUST00000154430, ENSMUST00000167509, ENSMUST00000169965, ENSMUST00000171254, ENSMUST00000178822
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001252413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001252414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001252415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_027186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_156443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003949500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK010289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL596136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC047996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY576068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB588111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR936847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ810272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000018593 ⟹ ENSMUSP00000018593

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,213 - 70,977,833 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000108529 ⟹ ENSMUSP00000104169

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,507 - 70,977,687 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000126815

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,480 - 70,974,162 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000129531

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,491 - 70,973,491 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000129540

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,974,740 - 70,977,801 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000136665

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,486 - 70,972,349 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000146788

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,972,803 - 70,977,805 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000151608

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,529 - 70,974,429 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000154430 ⟹ ENSMUSP00000137113

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,227 - 70,971,919 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000167509 ⟹ ENSMUSP00000127315

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,507 - 70,977,687 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000169965 ⟹ ENSMUSP00000128903

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,507 - 70,977,687 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000171254 ⟹ ENSMUSP00000133243

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,507 - 70,977,687 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000178822 ⟹ ENSMUSP00000136592

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	70,970,507 - 70,977,687 (+)	Ensembl

RefSeq Acc Id:

NM_001252413 ⟹ NP_001239342

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,861,025 - 70,868,759 (+)	NCBI
GRCm38	11	70,970,199 - 70,977,933 (+)	NCBI
Celera	11	78,524,602 - 78,532,336 (+)	ENTREZGENE
cM Map	11		ENTREZGENE

Sequence:

show sequence

GTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTAAACCC
AGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTCACTGC
TTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACAATTCC
AAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAATCCTTT
GCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAGAGTCC
TCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCA
GGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAG
TGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGG
ACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGAAAAGTCCATCATAAGCGA
GTATGAAGAGGACTTAGAGTTTGATGAAAGTTGTCTCAGGAGAATGTTGGCTGAGTGGGAAGCA
AACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGT
GTCCATGTGGCCTGCACATCCCTGTTCACACTTGTGACACCTGGGCTGTGATCCTCTAGCCATC
CCGACCTCACACTTCACTACTGAGCTGAGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACA
AGCCTTTTGTATATAACGGATTTTATATTAAAACTTCAGACATCTCTGCTCTTGGTGTTCTGAT
GTGGGCGAAAGAACCTCAACTTTCCTGGAGATTTATTGGAGTCAGATTTATTGTCCATCATCAT
GTTATACAAAAATCTACAAATAATAAATTTGTACAGAGAAAAAAAGCCC

hide sequence

RefSeq Acc Id:

NM_001252414 ⟹ NP_001239343

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,861,025 - 70,868,759 (+)	NCBI
GRCm38	11	70,970,199 - 70,977,933 (+)	NCBI
Celera	11	78,524,602 - 78,532,336 (+)	ENTREZGENE
cM Map	11		ENTREZGENE

Sequence:

show sequence

GTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTAAACCC
AGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTCACTGC
TTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACAATTCC
AAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAATCCTTT
GCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAGAGTCC
TCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCA
GGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAG
TGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGG
ACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGACTTGTGACACCTGGGCTG
TGATCCTCTAGCCATCCCGACCTCACACTTCACTACTGAGCTGAGAACAACTCATTTCCTGAGA
GGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTTATATTAAAACTTCAGACATCTCTG
CTCTTGGTGTTCTGATGTGGGCGAAAGAACCTCAACTTTCCTGGAGATTTATTGGAGTCAGATT
TATTGTCCATCATCATGTTATACAAAAATCTACAAATAATAAATTTGTACAGAGAAAAAAAGCC
C

hide sequence

RefSeq Acc Id:

NM_001252415 ⟹ NP_001239344

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,861,025 - 70,868,759 (+)	NCBI
GRCm38	11	70,970,199 - 70,977,933 (+)	NCBI
Celera	11	78,524,602 - 78,532,336 (+)	ENTREZGENE
cM Map	11		ENTREZGENE

Sequence:

show sequence

GTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTAAACCC
AGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTCACTGC
TTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACAATTCC
AAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAATCCTTT
GCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAGAGTCC
TCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCA
GGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAG
TGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGG
ACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGAAAAGTCCATCATAAGCGA
GTATGAAGAGGACTTAGAGTTTGATGAAAGTTGTCTCAGGAGAATGTTGGCTGAGTGGGAAGCA
AACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGT
GTCCATGTGGCCTGCACATCCCTGTTCACTCACCGGTGGAACAGAAGAGAAGCCCAGTCTTCTG
ATGAACTGCCTGACTTGTGACACCTGGGCTGTGATCCTCTAGCCATCCCGACCTCACACTTCAC
TACTGAGCTGAGAACAACTCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAAC
GGATTTTATATTAAAACTTCAGACATCTCTGCTCTTGGTGTTCTGATGTGGGCGAAAGAACCTC
AACTTTCCTGGAGATTTATTGGAGTCAGATTTATTGTCCATCATCATGTTATACAAAAATCTAC
AAATAATAAATTTGTACAGAGAAAAAAAGCCC

hide sequence

RefSeq Acc Id:

NM_027186 ⟹ NP_081462

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,861,025 - 70,868,759 (+)	NCBI
GRCm38	11	70,970,199 - 70,977,933 (+)	NCBI
MGSCv37	11	70,783,715 - 70,791,306 (+)	RGD
Celera	11	78,524,602 - 78,532,336 (+)	ENTREZGENE
cM Map	11		ENTREZGENE

Sequence:

show sequence

GTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTAAACCC
AGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTCACTGC
TTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACAATTCC
AAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAATCCTTT
GCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAGAGTCC
TCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCA
GGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAG
TGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGG
ACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGAAAAGTCCATCATAAGCGA
GTATGAAGAGGACTTAGAGTTTGATGAAAGTTGTCTCAGGAGAATGTTGGCTGAGTGGGAAGCA
AACTCCCTCATCTGTCCTGTGTGTATAAAGTACAACCTGAGAATAATGAACAGTGTGGTCACGT
GTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGCAGAAGCTTCGAGCCTG
TTTGGAAGAAAATGTGAATGAGCACAGTGTACACTGTCCCCACACCCCTGTGTTCTCAGTCACC
GGTGGAACAGAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGTGACACCTGGGCTGTGA
TCCTCTAGCCATCCCGACCTCACACTTCACTACTGAGCTGAGAACAACTCATTTCCTGAGAGGG
CCCTGTATGCACAAGCCTTTTGTATATAACGGATTTTATATTAAAACTTCAGACATCTCTGCTC
TTGGTGTTCTGATGTGGGCGAAAGAACCTCAACTTTCCTGGAGATTTATTGGAGTCAGATTTAT
TGTCCATCATCATGTTATACAAAAATCTACAAATAATAAATTTGTACAGAGAAAAAAAGCCC

hide sequence

RefSeq Acc Id:

NR_156443

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,861,025 - 70,868,759 (+)	NCBI
GRCm38	11	70,970,199 - 70,977,933 (+)	NCBI

Sequence:

show sequence

GTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTAAACCC
AGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTCACTGC
TTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACAATTCC
AAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAATCCTTT
GCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAGAGTCC
TCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAACTTTCA
GGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGCCAGGC
TGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGGAAGAG
TGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCCACTGG
ACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGGTACAACCTGAGAATAATG
AACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACTCAACAGACCTGACAGAGC
AGAAGCTTCGAGCCTGTTTGGAAGAAAATGTGAATGAGCACAGTGTACACTGTCCCCACACCCC
TGTGTTCTCAGTCACCGGTGGAACAGAAGAGAAGCCCAGTCTTCTGATGAACTGCCTGACTTGT
GACACCTGGGCTGTGATCCTCTAGCCATCCCGACCTCACACTTCACTACTGAGCTGAGAACAAC
TCATTTCCTGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTTATATTAAAACT
TCAGACATCTCTGCTCTTGGTGTTCTGATGTGGGCGAAAGAACCTCAACTTTCCTGGAGATTTA
TTGGAGTCAGATTTATTGTCCATCATCATGTTATACAAAAATCTACAAATAATAAATTTGTACA
GAGAAAAAAAGCCC

hide sequence

RefSeq Acc Id:

XR_003949500

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	70,860,403 - 70,868,631 (+)	NCBI
GRCm38	11	70,970,130 - 70,977,805 (+)	NCBI

Sequence:

show sequence

GGGCGGGGCGGGGCGGGGCGGAGTGGAGTGTAAGGATCGCTTTGGGGCTGCTGCTGGGCCAGTG
AGGGGGTAGCGTTAAGGATGAGAGATGTGTGTCTGATTGTCTACTGGACAACTTCCTCTGGGTA
AACCCAGAACTTTCTCTCAAGATTCACCTCCCTCAGCCCGGGTGGTGTTTACTTCTCAACTGTC
ACTGCTTCATCTATCCTCGGATTCCCCTAAATCTGTCACTGTGAGGGGATAGAAACTAGATACA
ATTCCAAGAAAGCCCGGCGGCCTGAAGTACAGACAGACTGCGCCGAGACTACAACTTCCAGAAT
CCTTTGCGCGCGGCTAAGGGGCGGTGATTTGGGCGCTGTTTCCCGCTAAGGGAGGAGATGGCAG
AGTCCTCGGGGTCTCCGCACCGCTTGTTGTACAAGCAGGTGGGCTCGCCCCACTGGAAAGAAAC
TTTCAGGCAGGGATGTCTGGAGAGAATGAGAAACAGCAGGCACAGGCTCCTGAACAAATATCGC
CAGGCTGCAGGTAGCACGCCGGGGACAGCCTCAGACAGACTTCTTGTGCAAGAAGTAATGGAGG
AAGAGTGGGCTTCTTTGCAGTCTGTGGAGAATTGTCCGGAGGCCTTGCTTCAGTTGGAATTGCC
ACTGGACCTAGCTGTGCTGCAGGACATCGAGCAGGAGCTGTGTAATGAAGGTACAACCTGAGAA
TAATGAACAGTGTGGTCACGTGTCCATGTGGCCTGCACATCCCTGTTCACACTTGTGACACCTG
GGCTGTGATCCTCTAGCCATCCCGACCTCACACTTCACTACTGAGCTGAGAACAACTCATTTCC
TGAGAGGGCCCTGTATGCACAAGCCTTTTGTATATAACGGATTTTATATTAAAACTTCAGACAT
CTCTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001239342	(Get FASTA)	NCBI Sequence Viewer
	NP_001239343	(Get FASTA)	NCBI Sequence Viewer
	NP_001239344	(Get FASTA)	NCBI Sequence Viewer
	NP_081462	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH47996	(Get FASTA)	NCBI Sequence Viewer
	ABG85157	(Get FASTA)	NCBI Sequence Viewer
	ABG85158	(Get FASTA)	NCBI Sequence Viewer
	ABG85159	(Get FASTA)	NCBI Sequence Viewer
	ABG85160	(Get FASTA)	NCBI Sequence Viewer
	ABG85161	(Get FASTA)	NCBI Sequence Viewer
	ABG85162	(Get FASTA)	NCBI Sequence Viewer
	BAB26825	(Get FASTA)	NCBI Sequence Viewer
	EDL12632	(Get FASTA)	NCBI Sequence Viewer
	EDL12633	(Get FASTA)	NCBI Sequence Viewer
	Q9CWY9	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_081462 ⟸ NM_027186
- Peptide Label:	isoform 1
- UniProtKB:	Q9CWY9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEV MEEEWASLQSVENCPEALLQLELPLDLAVLQDIEQELCNEEKSIISEYEEDLEFDESCLRRMLA EWEANSLICPVCIKYNLRIMNSVVTCPCGLHIPVHSTDLTEQKLRACLEENVNEHSVHCPHTPV FSVTGGTEEKPSLLMNCLTCDTWAVIL hide sequence

RefSeq Acc Id:	NP_001239344 ⟸ NM_001252415
- Peptide Label:	isoform 2
- UniProtKB:	Q9CWY9 (UniProtKB/Swiss-Prot), J3QN46 (UniProtKB/TrEMBL), Q0PL82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEV MEEEWASLQSVENCPEALLQLELPLDLAVLQDIEQELCNEEKSIISEYEEDLEFDESCLRRMLA EWEANSLICPVCIKYNLRIMNSVVTCPCGLHIPVHSPVEQKRSPVF hide sequence

RefSeq Acc Id:	NP_001239342 ⟸ NM_001252413
- Peptide Label:	isoform 3
- UniProtKB:	Q9CWY9 (UniProtKB/Swiss-Prot), Q0PL81 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEV MEEEWASLQSVENCPEALLQLELPLDLAVLQDIEQELCNEEKSIISEYEEDLEFDESCLRRMLA EWEANSLICPVCIKYNLRIMNSVVTCPCGLHIPVHTCDTWAVIL hide sequence

RefSeq Acc Id:	NP_001239343 ⟸ NM_001252414
- Peptide Label:	isoform 4
- UniProtKB:	Q9CWY9 (UniProtKB/Swiss-Prot), Q0PL79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAESSGSPHRLLYKQVGSPHWKETFRQGCLERMRNSRHRLLNKYRQAAGSTPGTASDRLLVQEV MEEEWASLQSVENCPEALLQLELPLDLAVLQDIEQELCNEDL hide sequence

RefSeq Acc Id:

ENSMUSP00000136592 ⟸ ENSMUST00000178822

RefSeq Acc Id:

ENSMUSP00000104169 ⟸ ENSMUST00000108529

RefSeq Acc Id:

ENSMUSP00000133243 ⟸ ENSMUST00000171254

RefSeq Acc Id:

ENSMUSP00000137113 ⟸ ENSMUST00000154430

RefSeq Acc Id:

ENSMUSP00000127315 ⟸ ENSMUST00000167509

RefSeq Acc Id:

ENSMUSP00000128903 ⟸ ENSMUST00000169965

RefSeq Acc Id:

ENSMUSP00000018593 ⟸ ENSMUST00000018593

Protein Domains

RPA_interact_C RPA_interact_M RPA_interact_N

Promoters

RGD ID:

6821992

Promoter ID:

MM_KWN:8262

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000108529, NM_172394, OTTMUST00000013710, OTTMUST00000013712, OTTMUST00000013713, OTTMUST00000013714, OTTMUST00000013716, OTTMUST00000013717, OTTMUST00000013738, UC007JWV.1, UC007JWW.1, UC007JWY.1, UC007JWZ.1, UC007JXB.1, UC007JXC.1, UC007JXD.1, UC007JXE.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	70,782,321 - 70,783,907 (+)	MPROMDB

RGD ID:

6821990

Promoter ID:

MM_KWN:8263

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

OTTMUST00000013711

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	70,785,921 - 70,786,421 (+)	MPROMDB

RGD ID:

8675382

Promoter ID:

EPDNEW_M15721

Type:

single initiation site

Name:

Rpain_1

Description:

Mus musculus RPA interacting protein , transcript variant 4,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15722

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	70,970,190 - 70,970,250	EPDNEW

RGD ID:

8675384

Promoter ID:

EPDNEW_M15722

Type:

initiation region

Name:

Rpain_2

Description:

Mus musculus RPA interacting protein , transcript variant 4,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M15721

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	70,970,475 - 70,970,535	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1916973	AgrOrtholog
Ensembl Genes	ENSMUSG00000018449	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000018593	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000104169	UniProtKB/TrEMBL
	ENSMUSP00000127315	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000128903	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000133243	UniProtKB/TrEMBL
	ENSMUSP00000136592	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000137113	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000018593	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000108529	UniProtKB/TrEMBL
	ENSMUST00000154430	UniProtKB/TrEMBL
	ENSMUST00000167509	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000169965	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000171254	UniProtKB/TrEMBL
	ENSMUST00000178822	ENTREZGENE, UniProtKB/TrEMBL
InterPro	RIP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RPA_interact_C_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RPA_interact_central	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RPA_interact_N_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:69723	UniProtKB/Swiss-Prot
MGD	MGI:1916973	ENTREZGENE
NCBI Gene	69723	ENTREZGENE
PANTHER	PTHR31742	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RPA_interact_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RPA_interact_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RPA_interact_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpain	PhenoGen
UniProt	J3QN46	ENTREZGENE, UniProtKB/TrEMBL
	J3QP63_MOUSE	UniProtKB/TrEMBL
	Q0PL78_MOUSE	UniProtKB/TrEMBL
	Q0PL79	ENTREZGENE, UniProtKB/TrEMBL
	Q0PL80_MOUSE	UniProtKB/TrEMBL
	Q0PL81	ENTREZGENE, UniProtKB/TrEMBL
	Q0PL82	ENTREZGENE, UniProtKB/TrEMBL
	Q0PL83_MOUSE	UniProtKB/TrEMBL
	Q9CWY9	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)