Rpain (RPA interacting protein) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Rpain (RPA interacting protein) Mus musculus
Analyze
Symbol: Rpain
Name: RPA interacting protein
RGD ID: 1331906
MGI Page MGI
Description: Is expressed in embryo; extraembryonic component; oocyte; primitive endoderm; and yolk sac. Orthologous to human RPAIN (RPA interacting protein); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2400006N03Rik; Rip; RP23-83I13.5; RPA interacting protein delta 2; RPA interacting protein epsilon; RPA-interacting protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,860,403 - 70,868,759 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,861,039 - 70,868,659 (+)Ensembl
GRCm381170,970,130 - 70,977,933 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,970,213 - 70,977,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,783,715 - 70,791,306 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,786,408 - 70,793,999 (+)NCBImm8
Celera1178,524,615 - 78,532,207 (+)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
fibrillar center  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA)
PML body  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16135809   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:19192389   PMID:21873635  


Genomics

Comparative Map Data
Rpain
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,860,403 - 70,868,759 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,861,039 - 70,868,659 (+)Ensembl
GRCm381170,970,130 - 70,977,933 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,970,213 - 70,977,833 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,783,715 - 70,791,306 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,786,408 - 70,793,999 (+)NCBImm8
Celera1178,524,615 - 78,532,207 (+)NCBICelera
Cytogenetic Map11B4NCBI
RPAIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl175,419,641 - 5,432,877 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl175,419,641 - 5,432,876 (+)EnsemblGRCh38hg38GRCh38
GRCh38175,420,167 - 5,432,879 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37175,323,502 - 5,336,197 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,263,685 - 5,276,920 (+)NCBINCBI36hg18NCBI36
Celera175,339,333 - 5,352,712 (+)NCBI
Cytogenetic Map17p13.2NCBI
HuRef175,213,488 - 5,226,867 (+)NCBIHuRef
CHM1_1175,332,606 - 5,345,985 (+)NCBICHM1_1
Rpain
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,692,410 - 55,699,910 (+)NCBI
Rnor_6.0 Ensembl1057,606,650 - 57,613,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01057,606,287 - 57,613,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01057,351,523 - 57,359,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,874,557 - 57,881,526 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11057,887,893 - 57,895,355 (+)NCBI
Celera1054,838,418 - 54,845,387 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rpain
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,780,910 - 10,792,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,780,818 - 10,788,137 (+)NCBIChiLan1.0ChiLan1.0
RPAIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1175,460,277 - 5,473,568 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,460,277 - 5,473,568 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0175,467,978 - 5,481,219 (+)NCBIMhudiblu_PPA_v0panPan3
RPAIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl531,358,594 - 31,365,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1531,359,735 - 31,366,108 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rpain
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366772,376,666 - 2,384,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPAIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,553,130 - 51,562,743 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,553,130 - 51,562,419 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPAIN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,829,096 - 4,843,302 (+)NCBI
ChlSab1.1 Ensembl164,829,248 - 4,846,415 (+)Ensembl
Rpain
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,231,882 - 9,239,201 (+)NCBI

Position Markers
RH126506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,977,861 - 70,978,110UniSTSGRCm38
MGSCv371170,791,363 - 70,791,612UniSTSGRCm37
Celera1178,532,264 - 78,532,513UniSTS
Cytogenetic Map11B4UniSTS
cM Map1137.0UniSTS
Whitehead/MRC_RH11904.75UniSTS
AA407679  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,977,937 - 70,978,080UniSTSGRCm38
MGSCv371170,791,439 - 70,791,582UniSTSGRCm37
Celera1178,532,340 - 78,532,483UniSTS
Cytogenetic Map11B4UniSTS
cM Map1137.0UniSTS
Whitehead/MRC_RH11904.85UniSTS
Whitehead/MRC_RH11904.75UniSTS
D11Wsu182e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,977,879 - 70,978,113UniSTSGRCm38
MGSCv371170,791,381 - 70,791,615UniSTSGRCm37
Celera1178,532,282 - 78,532,516UniSTS
Cytogenetic Map11B4UniSTS
cM Map1137.0UniSTS
cM Map1140.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1476
Count of miRNA genes:525
Interacting mature miRNAs:632
Transcripts:ENSMUST00000018593, ENSMUST00000108529, ENSMUST00000126815, ENSMUST00000129531, ENSMUST00000129540, ENSMUST00000136665, ENSMUST00000146788, ENSMUST00000151608, ENSMUST00000154430, ENSMUST00000167509, ENSMUST00000169965, ENSMUST00000171254, ENSMUST00000178822
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK010289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY576068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB588111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ810272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018593   ⟹   ENSMUSP00000018593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,213 - 70,977,833 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108529   ⟹   ENSMUSP00000104169
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,507 - 70,977,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126815
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,480 - 70,974,162 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,491 - 70,973,491 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129540
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,974,740 - 70,977,801 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,486 - 70,972,349 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146788
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,972,803 - 70,977,805 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151608
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,529 - 70,974,429 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154430   ⟹   ENSMUSP00000137113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,227 - 70,971,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167509   ⟹   ENSMUSP00000127315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,507 - 70,977,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169965   ⟹   ENSMUSP00000128903
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,507 - 70,977,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171254   ⟹   ENSMUSP00000133243
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,507 - 70,977,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178822   ⟹   ENSMUSP00000136592
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1170,970,507 - 70,977,687 (+)Ensembl
RefSeq Acc Id: NM_001252413   ⟹   NP_001239342
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,861,025 - 70,868,759 (+)NCBI
GRCm381170,970,199 - 70,977,933 (+)NCBI
Celera1178,524,602 - 78,532,336 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252414   ⟹   NP_001239343
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,861,025 - 70,868,759 (+)NCBI
GRCm381170,970,199 - 70,977,933 (+)NCBI
Celera1178,524,602 - 78,532,336 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252415   ⟹   NP_001239344
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,861,025 - 70,868,759 (+)NCBI
GRCm381170,970,199 - 70,977,933 (+)NCBI
Celera1178,524,602 - 78,532,336 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027186   ⟹   NP_081462
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,861,025 - 70,868,759 (+)NCBI
GRCm381170,970,199 - 70,977,933 (+)NCBI
MGSCv371170,783,715 - 70,791,306 (+)RGD
Celera1178,524,602 - 78,532,336 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156443
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,861,025 - 70,868,759 (+)NCBI
GRCm381170,970,199 - 70,977,933 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949500
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,860,403 - 70,868,631 (+)NCBI
GRCm381170,970,130 - 70,977,805 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081462   ⟸   NM_027186
- Peptide Label: isoform 1
- UniProtKB: Q9CWY9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239344   ⟸   NM_001252415
- Peptide Label: isoform 2
- UniProtKB: Q9CWY9 (UniProtKB/Swiss-Prot),   J3QN46 (UniProtKB/TrEMBL),   Q0PL82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239342   ⟸   NM_001252413
- Peptide Label: isoform 3
- UniProtKB: Q9CWY9 (UniProtKB/Swiss-Prot),   Q0PL81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239343   ⟸   NM_001252414
- Peptide Label: isoform 4
- UniProtKB: Q9CWY9 (UniProtKB/Swiss-Prot),   Q0PL79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136592   ⟸   ENSMUST00000178822
RefSeq Acc Id: ENSMUSP00000104169   ⟸   ENSMUST00000108529
RefSeq Acc Id: ENSMUSP00000133243   ⟸   ENSMUST00000171254
RefSeq Acc Id: ENSMUSP00000137113   ⟸   ENSMUST00000154430
RefSeq Acc Id: ENSMUSP00000127315   ⟸   ENSMUST00000167509
RefSeq Acc Id: ENSMUSP00000128903   ⟸   ENSMUST00000169965
RefSeq Acc Id: ENSMUSP00000018593   ⟸   ENSMUST00000018593
Promoters
RGD ID:6821992
Promoter ID:MM_KWN:8262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108529,   NM_172394,   OTTMUST00000013710,   OTTMUST00000013712,   OTTMUST00000013713,   OTTMUST00000013714,   OTTMUST00000013716,   OTTMUST00000013717,   OTTMUST00000013738,   UC007JWV.1,   UC007JWW.1,   UC007JWY.1,   UC007JWZ.1,   UC007JXB.1,   UC007JXC.1,   UC007JXD.1,   UC007JXE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,782,321 - 70,783,907 (+)MPROMDB
RGD ID:6821990
Promoter ID:MM_KWN:8263
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000013711
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,785,921 - 70,786,421 (+)MPROMDB
RGD ID:8675382
Promoter ID:EPDNEW_M15721
Type:single initiation site
Name:Rpain_1
Description:Mus musculus RPA interacting protein , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15722  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,970,190 - 70,970,250EPDNEW
RGD ID:8675384
Promoter ID:EPDNEW_M15722
Type:initiation region
Name:Rpain_2
Description:Mus musculus RPA interacting protein , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15721  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,970,475 - 70,970,535EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916973 AgrOrtholog
Ensembl Genes ENSMUSG00000018449 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000018593 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104169 UniProtKB/TrEMBL
  ENSMUSP00000127315 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000128903 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000133243 UniProtKB/TrEMBL
  ENSMUSP00000136592 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000137113 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018593 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108529 UniProtKB/TrEMBL
  ENSMUST00000154430 UniProtKB/TrEMBL
  ENSMUST00000167509 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000169965 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000171254 UniProtKB/TrEMBL
  ENSMUST00000178822 ENTREZGENE, UniProtKB/TrEMBL
InterPro RIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPA_interact_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPA_interact_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPA_interact_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69723 UniProtKB/Swiss-Prot
MGD MGI:1916973 ENTREZGENE
NCBI Gene 69723 ENTREZGENE
PANTHER PTHR31742 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RPA_interact_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPA_interact_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPA_interact_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpain PhenoGen
UniProt J3QN46 ENTREZGENE, UniProtKB/TrEMBL
  J3QP63_MOUSE UniProtKB/TrEMBL
  Q0PL78_MOUSE UniProtKB/TrEMBL
  Q0PL79 ENTREZGENE, UniProtKB/TrEMBL
  Q0PL80_MOUSE UniProtKB/TrEMBL
  Q0PL81 ENTREZGENE, UniProtKB/TrEMBL
  Q0PL82 ENTREZGENE, UniProtKB/TrEMBL
  Q0PL83_MOUSE UniProtKB/TrEMBL
  Q9CWY9 ENTREZGENE, UniProtKB/Swiss-Prot