Nup210 (nucleoporin 210) - Rat Genome Database
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Gene: Nup210 (nucleoporin 210) Mus musculus
Analyze
Symbol: Nup210
Name: nucleoporin 210
RGD ID: 1331883
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; brain; lung; metanephros; and olfactory epithelium. Orthologous to human NUP210 (nucleoporin 210); INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9830001L10; AI836801; gp19; gp190; gp21; gp210; nuclear envelope pore membrane protein POM 210; nuclear pore membrane glycoprotein 210; nuclear pore membrane protein 210; nuclear pore protein gp210; nucleoporin Nup210; Pom2; Pom210; pore membrane protein of 210 kDa
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,990,049 - 91,095,920 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,990,050 - 91,093,811 (-)Ensembl
GRCm38691,013,067 - 91,118,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,013,068 - 91,116,829 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,963,061 - 91,066,820 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,978,574 - 91,082,298 (-)NCBImm8
Celera692,903,568 - 93,007,504 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,6-dinitrotoluene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxynon-2-enal  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
aminoglutethimide  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
fipronil  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
indinavir  (EXP)
lamivudine  (EXP)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
saquinavir  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10469352   PMID:11042159   PMID:11076861   PMID:11834739   PMID:12477932   PMID:12601009   PMID:12904583   PMID:14610273   PMID:14697343   PMID:15304359  
PMID:15368895   PMID:15489334   PMID:15613247   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16183747   PMID:16602821   PMID:18799693   PMID:21267068   PMID:21873635   PMID:25778917  
PMID:27707753   PMID:28378742   PMID:29736031   PMID:30196744   PMID:30323813  


Genomics

Comparative Map Data
Nup210
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,990,049 - 91,095,920 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,990,050 - 91,093,811 (-)Ensembl
GRCm38691,013,067 - 91,118,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,013,068 - 91,116,829 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,963,061 - 91,066,820 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,978,574 - 91,082,298 (-)NCBImm8
Celera692,903,568 - 93,007,504 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.3NCBI
NUP210
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl313,316,235 - 13,420,322 (-)EnsemblGRCh38hg38GRCh38
GRCh38313,316,235 - 13,420,322 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37313,357,735 - 13,461,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36313,332,737 - 13,436,809 (-)NCBINCBI36hg18NCBI36
Build 34313,332,736 - 13,436,809NCBI
Celera313,295,991 - 13,400,071 (-)NCBI
Cytogenetic Map3p25.1NCBI
HuRef313,291,073 - 13,394,965 (-)NCBIHuRef
CHM1_1313,307,763 - 13,411,847 (-)NCBICHM1_1
Nup210
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24123,511,559 - 123,609,874 (-)NCBI
Rnor_6.0 Ensembl4122,644,135 - 122,741,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04122,643,952 - 122,741,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04187,804,454 - 187,901,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,189,612 - 125,285,493 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14125,434,092 - 125,529,974 (-)NCBI
Celera4112,435,032 - 112,530,305 (-)NCBICelera
Cytogenetic Map4q34NCBI
Nup210
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542912,961,665 - 13,043,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542912,907,943 - 13,041,819 (+)NCBIChiLan1.0ChiLan1.0
NUP210
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1313,580,317 - 13,663,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl313,581,763 - 13,664,011 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0313,236,064 - 13,339,807 (-)NCBIMhudiblu_PPA_v0panPan3
NUP210
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl203,636,476 - 3,721,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1203,635,355 - 3,740,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nup210
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936898196,545 - 237,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP210
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,917,452 - 71,007,271 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,917,464 - 71,007,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21378,614,272 - 78,704,936 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP210
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12249,299,689 - 49,409,508 (-)NCBI
Nup210
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479612,725,808 - 12,825,793 (+)NCBI

Position Markers
AI836801  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38691,013,195 - 91,013,274UniSTSGRCm38
MGSCv37690,963,189 - 90,963,268UniSTSGRCm37
Celera692,903,696 - 92,903,775UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.1UniSTS
Whitehead/MRC_RH6934.87UniSTS
UniSTS:224278  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38691,042,964 - 91,043,139UniSTSGRCm38
MGSCv37690,992,958 - 90,993,133UniSTSGRCm37
Celera692,933,125 - 92,933,300UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2104
Count of miRNA genes:649
Interacting mature miRNAs:822
Transcripts:ENSMUST00000032179, ENSMUST00000113509, ENSMUST00000123340, ENSMUST00000139051, ENSMUST00000141952, ENSMUST00000142951, ENSMUST00000148397, ENSMUST00000151437, ENSMUST00000153350
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032179   ⟹   ENSMUSP00000032179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,013,068 - 91,116,829 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113509   ⟹   ENSMUSP00000109137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,013,070 - 91,116,819 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123340
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,013,317 - 91,017,429 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139051
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,052,582 - 91,053,620 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,018,745 - 91,025,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142951   ⟹   ENSMUSP00000120098
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,013,070 - 91,055,384 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148397
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,018,924 - 91,024,049 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,060,715 - 91,065,844 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153350
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,026,580 - 91,030,258 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203434
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,114,357 - 91,116,796 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl691,085,809 - 91,098,622 (-)Ensembl
RefSeq Acc Id: NM_018815   ⟹   NP_061285
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,990,049 - 91,093,808 (-)NCBI
GRCm38691,013,067 - 91,116,826 (-)NCBI
MGSCv37690,963,061 - 91,066,820 (-)RGD
Celera692,903,568 - 93,007,504 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506400   ⟹   XP_006506463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,990,050 - 91,095,920 (-)NCBI
GRCm38691,013,068 - 91,118,322 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_061285   ⟸   NM_018815
- Peptide Label: precursor
- UniProtKB: Q9QY81 (UniProtKB/Swiss-Prot),   Q8BPS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506463   ⟸   XM_006506400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000032179   ⟸   ENSMUST00000032179
RefSeq Acc Id: ENSMUSP00000109137   ⟸   ENSMUST00000113509
RefSeq Acc Id: ENSMUSP00000120098   ⟸   ENSMUST00000142951
Protein Domains
BIG2

Promoters
RGD ID:6839708
Promoter ID:MM_KWN:46908
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000056488
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36691,015,801 - 91,016,301 (-)MPROMDB
RGD ID:6839709
Promoter ID:MM_KWN:46909
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000068922,   ENSMUST00000113509,   OTTMUST00000056487
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36691,066,361 - 91,066,861 (-)MPROMDB
RGD ID:6890432
Promoter ID:EPDNEW_M8667
Type:initiation region
Name:Nup210_1
Description:Mus musculus nucleoporin 210 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38691,116,817 - 91,116,877EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859555 AgrOrtholog
Ensembl Genes ENSMUSG00000030091 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032179 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109137 UniProtKB/TrEMBL
  ENSMUSP00000120098 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032179 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113509 UniProtKB/TrEMBL
  ENSMUST00000142951 UniProtKB/TrEMBL
InterPro Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Invasin/intimin_cell_adhesion UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54563 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1859555 ENTREZGENE
NCBI Gene 54563 ENTREZGENE
Pfam Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup210 PhenoGen
SMART BID_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49373 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1I6_MOUSE UniProtKB/TrEMBL
  F6XGN0_MOUSE UniProtKB/TrEMBL
  PO210_MOUSE UniProtKB/Swiss-Prot
  Q8BPS7 ENTREZGENE, UniProtKB/TrEMBL
  Q8C5C6_MOUSE UniProtKB/TrEMBL
  Q9QY81 ENTREZGENE
UniProt Secondary Q3U031 UniProtKB/Swiss-Prot
  Q69ZW2 UniProtKB/Swiss-Prot
  Q7TQM1 UniProtKB/Swiss-Prot