Gphn (gephyrin) - Rat Genome Database

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Gene: Gphn (gephyrin) Mus musculus
Analyze
Symbol: Gphn
Name: gephyrin
RGD ID: 1331858
MGI Page MGI
Description: Predicted to enable several functions, including molybdopterin adenylyltransferase activity; molybdopterin cofactor binding activity; and molybdopterin molybdotransferase activity. Involved in neurotransmitter receptor localization to postsynaptic specialization membrane. Acts upstream of or within Mo-molybdopterin cofactor biosynthetic process; postsynaptic neurotransmitter receptor diffusion trapping; and synapse organization. Located in several cellular components, including GABA-ergic synapse; inhibitory synapse; and postsynaptic density. Is anchored component of synaptic membrane. Is active in postsynaptic specialization, intracellular component. Is expressed in several structures, including central nervous system and retina. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin); PARTICIPATES IN Inhibitory synaptic transmission pathway; molybdenum cofactor biosynthetic pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5730552E08Rik; AI662856; BC027112; C230040D23; gep; geph; GPH; GPHRYN; MGC150066; MGC38765
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,264,099 - 78,731,546 (+)NCBIGRCm39mm39
GRCm39 Ensembl1278,273,153 - 78,731,546 (+)Ensembl
GRCm381278,217,325 - 78,684,772 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,226,379 - 78,684,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371279,327,642 - 79,785,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv361279,145,574 - 79,603,578 (+)NCBImm8
Celera1279,690,472 - 80,148,022 (+)NCBICelera
Cytogenetic Map12C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9089277   PMID:9812897   PMID:9882498   PMID:10349636   PMID:10531433   PMID:10900017   PMID:10922068   PMID:10963686   PMID:11042159   PMID:11056469   PMID:11076861  
PMID:11168555   PMID:11414787   PMID:12040032   PMID:12467588   PMID:12477932   PMID:12520002   PMID:12565882   PMID:12967995   PMID:14715953   PMID:15226823   PMID:15381924   PMID:15689563  
PMID:15782199   PMID:15963957   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:16616186   PMID:16701208   PMID:16987237   PMID:17145751   PMID:17347650   PMID:18227507  
PMID:18411266   PMID:18799693   PMID:18854036   PMID:19029045   PMID:19383528   PMID:19723286   PMID:19723784   PMID:19955355   PMID:20861386   PMID:21119615   PMID:21173228   PMID:21209184  
PMID:21267068   PMID:21628570   PMID:21829170   PMID:21864334   PMID:21873635   PMID:22542189   PMID:22768092   PMID:24096136   PMID:24448406   PMID:24507192   PMID:24554721   PMID:24613359  
PMID:24894704   PMID:24985044   PMID:25025157   PMID:25082542   PMID:25263489   PMID:25297980   PMID:25402856   PMID:25466558   PMID:25535349   PMID:25701174   PMID:25708312   PMID:25772192  
PMID:26740651   PMID:26829712   PMID:27423698   PMID:27565344   PMID:27609886   PMID:27819299   PMID:28190767   PMID:28598330   PMID:28671696   PMID:28706196   PMID:28864826   PMID:29024662  
PMID:29078280   PMID:29184203   PMID:30104731   PMID:30201312   PMID:30318414   PMID:30457570   PMID:30550785   PMID:30562941   PMID:30721695   PMID:31515109   PMID:31910261   PMID:31944180  
PMID:32325033   PMID:32853550   PMID:33154347  


Genomics

Comparative Map Data
Gphn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,264,099 - 78,731,546 (+)NCBIGRCm39mm39
GRCm39 Ensembl1278,273,153 - 78,731,546 (+)Ensembl
GRCm381278,217,325 - 78,684,772 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,226,379 - 78,684,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371279,327,642 - 79,785,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv361279,145,574 - 79,603,578 (+)NCBImm8
Celera1279,690,472 - 80,148,022 (+)NCBICelera
Cytogenetic Map12C3NCBI
GPHN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1466,507,407 - 67,181,803 (+)EnsemblGRCh38hg38GRCh38
GRCh381466,507,934 - 67,181,805 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371466,974,865 - 67,648,520 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361466,043,878 - 66,718,278 (+)NCBINCBI36hg18NCBI36
Build 341466,044,988 - 66,718,268NCBI
Celera1447,033,183 - 47,707,584 (+)NCBI
Cytogenetic Map14q23.3-q24.1NCBI
HuRef1447,144,073 - 47,817,837 (+)NCBIHuRef
CHM1_11466,912,247 - 67,587,111 (+)NCBICHM1_1
Gphn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2696,954,365 - 97,483,617 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl696,892,148 - 97,483,612 (+)Ensembl
Rnor_6.06101,327,874 - 101,859,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6101,532,518 - 101,859,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06110,709,516 - 111,190,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06111,210,069 - 111,237,661 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46100,833,004 - 101,302,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16100,836,459 - 101,306,408 (+)NCBI
Celera695,358,601 - 95,872,910 (+)NCBICelera
Cytogenetic Map6q24NCBI
Gphn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554663,016,479 - 3,526,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBIChiLan1.0ChiLan1.0
GPHN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11465,963,473 - 66,634,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1466,137,166 - 66,634,550 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01447,081,527 - 47,755,182 (+)NCBIMhudiblu_PPA_v0panPan3
GPHN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1840,585,625 - 41,204,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl840,585,883 - 41,203,245 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha840,270,522 - 40,895,744 (+)NCBI
ROS_Cfam_1.0840,807,578 - 41,430,716 (+)NCBI
UMICH_Zoey_3.1840,427,159 - 41,049,600 (+)NCBI
UNSW_CanFamBas_1.0840,497,926 - 41,123,844 (+)NCBI
UU_Cfam_GSD_1.0840,856,432 - 41,482,422 (+)NCBI
Gphn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,626,233 - 64,220,771 (-)NCBI
SpeTri2.0NW_0049364959,970,683 - 10,565,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPHN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl790,346,590 - 91,041,189 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1790,345,726 - 90,913,625 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2796,902,547 - 97,222,781 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPHN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12443,702,384 - 44,421,890 (+)NCBI
ChlSab1.1 Ensembl2443,880,344 - 44,422,276 (+)Ensembl
Vero_WHO_p1.0NW_02366605331,896,980 - 32,651,860 (+)NCBI
Gphn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473433,871,664 - 34,483,770 (-)NCBI

Position Markers
BB167507  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,446,558 - 78,446,692UniSTSGRCm38
MGSCv371279,547,545 - 79,547,679UniSTSGRCm37
Celera1279,909,598 - 79,909,732UniSTS
Cytogenetic Map12D2UniSTS
Whitehead/MRC_RH12739.96UniSTS
AI662856  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,225,259 - 78,225,360UniSTSGRCm38
MGSCv371279,326,246 - 79,326,347UniSTSGRCm37
Celera1279,689,076 - 79,689,177UniSTS
Cytogenetic Map12D2UniSTS
Whitehead/MRC_RH12736.13UniSTS
13.MMHAP76FRE7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12A2UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map12D2UniSTS
Whitehead_YAC12 UniSTS
mHAa21f6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,439,171 - 78,439,357UniSTSGRCm38
MGSCv371279,540,158 - 79,540,344UniSTSGRCm37
Celera1279,902,211 - 79,902,397UniSTS
Cytogenetic Map12D2UniSTS
Whitehead_YAC12 UniSTS
UniSTS:236880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,225,171 - 78,225,372UniSTSGRCm38
MGSCv371279,326,158 - 79,326,359UniSTSGRCm37
Celera1279,688,988 - 79,689,189UniSTS
Cytogenetic Map12D2UniSTS
UniSTS:236889  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,230,677 - 78,230,794UniSTSGRCm38
MGSCv371279,331,664 - 79,331,781UniSTSGRCm37
Celera1279,694,494 - 79,694,611UniSTS
Cytogenetic Map12D2UniSTS
MARC_1069-1070:991929832:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,683,816 - 78,683,983UniSTSGRCm38
MGSCv371279,784,803 - 79,784,970UniSTSGRCm37
Celera1280,147,066 - 80,147,233UniSTS
Cytogenetic Map12D2UniSTS
Gphn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12D2UniSTS
cM Map1235.51UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124164639290920752Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125279985286800022Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125308522887085371Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125464912582619165Mouse
4140993Tglq2b_mtriglyceride QTL 2b (mouse)Not determined125529146189291675Mouse
9850127Tglq6_mtriglyceride QTL6 (mouse)Not determined125529146189291675Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125910000093900000Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126060000092700000Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126115865395158653Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126199339095993590Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126210000099500000Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126226147896261478Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126390993497910109Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126464230998642455Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126464230998642455Mouse
14746976Manh73_mmandible shape 73 (mouse)126581035799810357Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126830000098800000Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72146107106146107Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273920648107920752Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273920648107920752Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:466
Count of miRNA genes:175
Interacting mature miRNAs:204
Transcripts:ENSMUST00000052472, ENSMUST00000110388
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC148324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO043793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y10882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y10883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000052472   ⟹   ENSMUSP00000054064
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1278,273,153 - 78,731,546 (+)Ensembl
GRCm38.p6 Ensembl1278,226,379 - 78,684,772 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110388   ⟹   ENSMUSP00000106018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1278,273,427 - 78,731,541 (+)Ensembl
GRCm38.p6 Ensembl1278,226,653 - 78,684,767 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1278,729,421 - 78,730,867 (+)Ensembl
GRCm38.p6 Ensembl1278,682,647 - 78,684,093 (+)Ensembl
RefSeq Acc Id: NM_145965   ⟹   NP_666077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,273,429 - 78,731,546 (+)NCBI
GRCm381278,226,655 - 78,684,772 (+)NCBI
MGSCv371279,327,642 - 79,785,759 (+)RGD
Celera1279,690,472 - 80,148,022 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172952   ⟹   NP_766540
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,273,429 - 78,731,546 (+)NCBI
GRCm381278,226,655 - 78,684,772 (+)NCBI
MGSCv371279,327,642 - 79,785,759 (+)RGD
Celera1279,690,472 - 80,148,022 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515899   ⟹   XP_006515962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,264,099 - 78,731,538 (+)NCBI
GRCm381278,217,325 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515900   ⟹   XP_006515963
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,175 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515901   ⟹   XP_006515964
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,546 (+)NCBI
GRCm381278,226,174 - 78,684,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515902   ⟹   XP_006515965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,176 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515903   ⟹   XP_006515966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,886 - 78,731,538 (+)NCBI
GRCm381278,226,173 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515904   ⟹   XP_006515967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,174 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515905   ⟹   XP_006515968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,889 - 78,731,538 (+)NCBI
GRCm381278,226,179 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515906   ⟹   XP_006515969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,177 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515907   ⟹   XP_006515970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,889 - 78,731,538 (+)NCBI
GRCm381278,226,179 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315073   ⟹   XP_017170562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,175 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315074   ⟹   XP_017170563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,176 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315075   ⟹   XP_017170564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,889 - 78,731,538 (+)NCBI
GRCm381278,226,178 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315076   ⟹   XP_017170565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,175 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315077   ⟹   XP_017170566
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,175 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315078   ⟹   XP_017170567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,176 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315079   ⟹   XP_017170568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,885 - 78,731,538 (+)NCBI
GRCm381278,226,171 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315080   ⟹   XP_017170569
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,572,907 - 78,731,546 (+)NCBI
GRCm381278,526,128 - 78,684,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246730   ⟹   XP_030102590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
GRCm381278,226,175 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246731   ⟹   XP_030102591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,176 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246732   ⟹   XP_030102592
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,886 - 78,731,538 (+)NCBI
GRCm381278,226,173 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246733   ⟹   XP_030102593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,888 - 78,731,538 (+)NCBI
GRCm381278,226,177 - 78,684,764 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157425   ⟹   XP_036013318
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,886 - 78,731,538 (+)NCBI
RefSeq Acc Id: XM_036157426   ⟹   XP_036013319
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
RefSeq Acc Id: XM_036157428   ⟹   XP_036013321
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,886 - 78,731,538 (+)NCBI
RefSeq Acc Id: XM_036157429   ⟹   XP_036013322
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
RefSeq Acc Id: XM_036157430   ⟹   XP_036013323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,538 (+)NCBI
RefSeq Acc Id: XM_036157431   ⟹   XP_036013324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,272,887 - 78,731,546 (+)NCBI
Protein Sequences
Protein RefSeqs NP_666077 (Get FASTA)   NCBI Sequence Viewer  
  NP_766540 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515962 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515963 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515964 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515965 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515966 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515967 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515968 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515969 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515970 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170562 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170563 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170564 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170565 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170566 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170567 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170568 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170569 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102590 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102591 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102592 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102593 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013318 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013319 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013321 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013322 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013323 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013324 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI27059 (Get FASTA)   NCBI Sequence Viewer  
  BAC38476 (Get FASTA)   NCBI Sequence Viewer  
  BAD90192 (Get FASTA)   NCBI Sequence Viewer  
  CAC06105 (Get FASTA)   NCBI Sequence Viewer  
  CAC06106 (Get FASTA)   NCBI Sequence Viewer  
  CAC06107 (Get FASTA)   NCBI Sequence Viewer  
  EDL02616 (Get FASTA)   NCBI Sequence Viewer  
  Q8BUV3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_766540   ⟸   NM_172952
- Peptide Label: isoform 2
- UniProtKB: Q8BUV3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_666077   ⟸   NM_145965
- Peptide Label: isoform 1
- UniProtKB: A0JNY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515964   ⟸   XM_006515901
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006515963   ⟸   XM_006515900
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006515965   ⟸   XM_006515902
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006515968   ⟸   XM_006515905
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006515966   ⟸   XM_006515903
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006515969   ⟸   XM_006515906
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006515962   ⟸   XM_006515899
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006515967   ⟸   XM_006515904
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006515970   ⟸   XM_006515907
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017170562   ⟸   XM_017315073
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017170563   ⟸   XM_017315074
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017170566   ⟸   XM_017315077
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017170568   ⟸   XM_017315079
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017170564   ⟸   XM_017315075
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017170567   ⟸   XM_017315078
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017170565   ⟸   XM_017315076
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017170569   ⟸   XM_017315080
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_030102592   ⟸   XM_030246732
- Peptide Label: isoform X22
RefSeq Acc Id: XP_030102590   ⟸   XM_030246730
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030102591   ⟸   XM_030246731
- Peptide Label: isoform X16
RefSeq Acc Id: XP_030102593   ⟸   XM_030246733
- Peptide Label: isoform X25
RefSeq Acc Id: ENSMUSP00000054064   ⟸   ENSMUST00000052472
RefSeq Acc Id: ENSMUSP00000106018   ⟸   ENSMUST00000110388
RefSeq Acc Id: XP_036013318   ⟸   XM_036157425
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036013321   ⟸   XM_036157428
- Peptide Label: isoform X21
RefSeq Acc Id: XP_036013324   ⟸   XM_036157431
- Peptide Label: isoform X27
RefSeq Acc Id: XP_036013323   ⟸   XM_036157430
- Peptide Label: isoform X24
RefSeq Acc Id: XP_036013319   ⟸   XM_036157426
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036013322   ⟸   XM_036157429
- Peptide Label: isoform X23
Protein Domains
MoCF_biosynth   MoeA_C

Promoters
RGD ID:8678612
Promoter ID:EPDNEW_M17336
Type:initiation region
Name:Gphn_1
Description:Mus musculus gephyrin , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381278,226,734 - 78,226,794EPDNEW
RGD ID:6823036
Promoter ID:MM_KWN:12016
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_145965,   NM_172952
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361279,326,836 - 79,328,007 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109602 AgrOrtholog
Ensembl Genes ENSMUSG00000047454 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000054064 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106018 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000052472 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000110388 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.40.340.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.980.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MoaB/Mog-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoaB/Mog_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoCF_biosynth_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_C_domain_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_C_domain_IV_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_linker/N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_linker/N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:268566 UniProtKB/Swiss-Prot
MGD MGI:109602 ENTREZGENE
NCBI Gene 268566 ENTREZGENE
PANTHER PTHR10192 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MoCF_biosynth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MoeA_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gphn PhenoGen
PROSITE MOCF_BIOSYNTHESIS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MOCF_BIOSYNTHESIS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MoCF_biosynth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF63867 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF63882 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs molyb_syn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0JNY3 ENTREZGENE, UniProtKB/TrEMBL
  GEPH_MOUSE UniProtKB/Swiss-Prot
  Q571C2_MOUSE UniProtKB/TrEMBL
  Q8BUV3 ENTREZGENE
  Q9ESW9_MOUSE UniProtKB/TrEMBL
  Q9ESX0_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QKJ1 UniProtKB/Swiss-Prot