LOC111094198 (protocadherin alpha-5-like) - Rat Genome Database

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Gene: LOC111094198 (protocadherin alpha-5-like) Canis lupus familiaris
Analyze
Symbol: LOC111094198
Name: protocadherin alpha-5-like
RGD ID: 13277537
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protocadherin alpha-4-like; uncharacterized protein LOC111094198
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,935,228 - 35,937,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,981,360 - 32,983,939 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,380,601 - 36,393,372 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0234,300,518 - 34,313,289 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,053,123 - 35,065,891 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC111094198
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,935,228 - 35,937,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,981,360 - 32,983,939 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,380,601 - 36,393,372 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0234,300,518 - 34,313,289 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,053,123 - 35,065,891 (+)NCBIUU_Cfam_GSD_1.0
PCDHA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,821,613 - 141,012,347 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,821,604 - 141,012,347 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,201,198 - 140,391,932 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,181,545 - 140,372,113 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,181,544 - 140,183,995NCBI
Celera5136,278,164 - 136,468,708 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,346,100 - 135,536,628 (+)NCBIHuRef
CHM1_15139,634,553 - 139,825,092 (+)NCBICHM1_1
T2T-CHM13v2.05141,346,947 - 141,537,634 (+)NCBIT2T-CHM13v2.0
Pcdha5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391837,093,329 - 37,320,716 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1837,093,493 - 37,320,710 (+)EnsemblGRCm39 Ensembl
GRCm381836,960,276 - 37,187,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,960,440 - 37,187,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv371837,120,094 - 37,347,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361837,086,414 - 37,313,631 (+)NCBIMGSCv36mm8
MGSCv361837,147,546 - 37,374,763 (+)NCBIMGSCv36mm8
Celera1837,407,219 - 37,425,403 (+)NCBICelera
Cytogenetic Map18B2- B3NCBI
cM Map1819.46NCBI
Pcdha5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl1828,581,225 - 28,846,211 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01829,980,268 - 30,215,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01829,677,518 - 29,924,444 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,690,938 - 29,928,031 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,717,765 - 29,954,676 (+)NCBI
Celera1828,319,101 - 28,552,755 (+)NCBICelera
Cytogenetic Map18p11NCBI

Variants

.
Variants in LOC111094198
20 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038458141   ⟹   XP_038314069
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha232,981,360 - 32,983,939 (+)NCBI
RefSeq Acc Id: XM_038529574   ⟹   XP_038385502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0235,053,123 - 35,065,891 (+)NCBI
RefSeq Acc Id: XM_038593804   ⟹   XP_038449732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0234,300,518 - 34,313,289 (+)NCBI
RefSeq Acc Id: XM_038657882   ⟹   XP_038513810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0236,380,601 - 36,393,372 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038314069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038385502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038449732 (Get FASTA)   NCBI Sequence Viewer  
  XP_038513810 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00040006175.1
  ENSCAFP00845003855.1
Reference Protein Sequences
RefSeq Acc Id: XP_038449732   ⟸   XM_038593804
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038513810   ⟸   XM_038657882
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038314069   ⟸   XM_038458141
- Peptide Label: isoform X4
- UniProtKB: A0A8C0PZT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038385502   ⟸   XM_038529574
- Peptide Label: isoform X3
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00040003725 UniProtKB/TrEMBL
  ENSCAFG00845002711 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00040007104.1 UniProtKB/TrEMBL
  ENSCAFT00845004820.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
NCBI Gene LOC111094198 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN ALPHA-5 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A8C0PZT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MHJ7_CANLF UniProtKB/TrEMBL