Senp3 (SUMO/sentrin specific peptidase 3) - Rat Genome Database

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Gene: Senp3 (SUMO/sentrin specific peptidase 3) Mus musculus
Analyze
Symbol: Senp3
Name: SUMO/sentrin specific peptidase 3
RGD ID: 1323816
MGI Page MGI
Description: Enables cysteine-type deubiquitinase activity. Acts upstream of or within protein metabolic process. Located in nucleolus. Is expressed in heart. Orthologous to human SENP3 (SUMO specific peptidase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA408656; sentrin-specific protease 3; sentrin/SUMO-specific protease SENP3; Smt3; smt3-specific isopeptidase 1; Smt3ip; Smt3ip1; SUMO-1-specific protease 3; SUMO/sentrin specific protease 3
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15236   Gm6580  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,563,936 - 69,572,910 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,563,941 - 69,572,910 (-)EnsemblGRCm39 Ensembl
GRCm381169,673,110 - 69,682,084 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,673,115 - 69,682,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,486,612 - 69,495,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,257,225 - 70,265,953 (-)NCBIMGSCv36mm8
MGSCv361169,489,313 - 69,498,041 (-)NCBIMGSCv36mm8
Celera1442,203,293 - 42,205,089 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
MLL1 complex  (ISO)
nucleolus  (IDA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10806345   PMID:11029585   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:18948745   PMID:19680224   PMID:21589869   PMID:21677750   PMID:21873635   PMID:22872859   PMID:22922362   PMID:23524851   PMID:25772139   PMID:26206133  
PMID:26584622   PMID:28671696   PMID:29277914   PMID:29352108   PMID:29576508   PMID:29771430   PMID:30089837   PMID:30992372   PMID:31373534   PMID:32049023   PMID:32237051   PMID:32560809  
PMID:33211757   PMID:33378226   PMID:33434504   PMID:33932085   PMID:34000626   PMID:34988397   PMID:35869062   PMID:36840491   PMID:37016838   PMID:38070059  


Genomics

Comparative Map Data
Senp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,563,936 - 69,572,910 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,563,941 - 69,572,910 (-)EnsemblGRCm39 Ensembl
GRCm381169,673,110 - 69,682,084 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,673,115 - 69,682,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,486,612 - 69,495,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,257,225 - 70,265,953 (-)NCBIMGSCv36mm8
MGSCv361169,489,313 - 69,498,041 (-)NCBIMGSCv36mm8
Celera1442,203,293 - 42,205,089 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
SENP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,561,919 - 7,571,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,561,919 - 7,571,969 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,465,236 - 7,475,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,406,043 - 7,416,011 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,406,051 - 7,416,005NCBI
Celera177,491,642 - 7,501,608 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,359,494 - 7,369,451 (+)NCBIHuRef
CHM1_1177,474,271 - 7,484,215 (+)NCBICHM1_1
T2T-CHM13v2.0177,466,180 - 7,476,216 (+)NCBIT2T-CHM13v2.0
Senp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,889,445 - 54,898,359 (-)NCBIGRCr8
mRatBN7.21054,390,698 - 54,399,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,390,694 - 54,399,593 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,053,330 - 59,062,115 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,541,882 - 58,550,667 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,049,464 - 54,058,248 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,277,609 - 56,286,867 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,277,615 - 56,286,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,023,247 - 56,032,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,490,584 - 56,499,367 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,504,209 - 56,513,074 (-)NCBI
Celera1053,545,215 - 53,553,997 (-)NCBICelera
Cytogenetic Map10q24NCBI
SENP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,156,979 - 15,166,645 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,123,059 - 17,132,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,593,904 - 7,603,538 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,580,106 - 7,589,838 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,580,106 - 7,589,838 (+)Ensemblpanpan1.1panPan2
SENP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,485,738 - 32,493,225 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,484,572 - 32,500,805 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,625,628 - 32,633,084 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,591,260 - 32,598,758 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,591,119 - 32,599,040 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,558,934 - 32,566,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,515,387 - 32,522,853 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,694,472 - 32,701,951 (+)NCBIUU_Cfam_GSD_1.0
Senp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,369,933 - 47,376,761 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595844,023 - 850,949 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595844,073 - 850,951 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SENP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,765,187 - 52,867,576 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,857,463 - 52,867,583 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SENP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,939,231 - 6,948,831 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,940,281 - 6,949,221 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,459,577 - 14,469,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Senp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,179,557 - 10,187,416 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,179,604 - 10,187,416 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Senp3
281 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1180
Count of miRNA genes:524
Interacting mature miRNAs:634
Transcripts:ENSMUST00000005336, ENSMUST00000066760, ENSMUST00000123084, ENSMUST00000128355, ENSMUST00000130440, ENSMUST00000134942, ENSMUST00000135372, ENSMUST00000142206, ENSMUST00000153516
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse

Markers in Region
RH124739  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B4UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000005336   ⟹   ENSMUSP00000005336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,563,941 - 69,572,672 (-)Ensembl
GRCm38.p6 Ensembl1169,673,115 - 69,681,846 (-)Ensembl
RefSeq Acc Id: ENSMUST00000066760   ⟹   ENSMUSP00000066581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,563,947 - 69,572,910 (-)Ensembl
GRCm38.p6 Ensembl1169,673,121 - 69,682,084 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,563,942 - 69,565,802 (-)Ensembl
GRCm38.p6 Ensembl1169,673,116 - 69,674,976 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,568,983 - 69,570,021 (-)Ensembl
GRCm38.p6 Ensembl1169,678,157 - 69,679,195 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,567,874 - 69,568,839 (-)Ensembl
GRCm38.p6 Ensembl1169,677,048 - 69,678,013 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134942   ⟹   ENSMUSP00000114791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,564,167 - 69,569,513 (-)Ensembl
GRCm38.p6 Ensembl1169,673,341 - 69,678,687 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,565,059 - 69,567,773 (-)Ensembl
GRCm38.p6 Ensembl1169,674,233 - 69,676,947 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,564,779 - 69,565,269 (-)Ensembl
GRCm38.p6 Ensembl1169,673,953 - 69,674,443 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153516
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,564,101 - 69,568,945 (-)Ensembl
GRCm38.p6 Ensembl1169,673,275 - 69,678,119 (-)Ensembl
RefSeq Acc Id: NM_001163571   ⟹   NP_001157043
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,563,936 - 69,572,910 (-)NCBI
GRCm381169,673,110 - 69,682,084 (-)ENTREZGENE
MGSCv371169,486,612 - 69,495,586 (-)RGD
Celera1442,203,293 - 42,205,089 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_030702   ⟹   NP_109627
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,563,936 - 69,572,796 (-)NCBI
GRCm381169,673,110 - 69,681,970 (-)NCBI
MGSCv371169,486,612 - 69,495,586 (-)RGD
Celera1442,203,293 - 42,205,089 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_109627   ⟸   NM_030702
- UniProtKB: Q8BRD5 (UniProtKB/Swiss-Prot),   Q5F2A5 (UniProtKB/Swiss-Prot),   Q8C2H5 (UniProtKB/Swiss-Prot),   Q9EP97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157043   ⟸   NM_001163571
- UniProtKB: Q8BRD5 (UniProtKB/Swiss-Prot),   Q5F2A5 (UniProtKB/Swiss-Prot),   Q8C2H5 (UniProtKB/Swiss-Prot),   Q9EP97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000066581   ⟸   ENSMUST00000066760
RefSeq Acc Id: ENSMUSP00000114791   ⟸   ENSMUST00000134942
RefSeq Acc Id: ENSMUSP00000005336   ⟸   ENSMUST00000005336
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EP97-F1-model_v2 AlphaFold Q9EP97 1-568 view protein structure

Promoters
RGD ID:6822050
Promoter ID:MM_KWN:8104
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000081648
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,489,936 - 69,490,436 (-)MPROMDB
RGD ID:6821932
Promoter ID:MM_KWN:8107
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000094071,   NM_001163571,   NM_030702,   OTTMUST00000078221
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,494,721 - 69,495,707 (+)MPROMDB
RGD ID:8675202
Promoter ID:EPDNEW_M15632
Type:initiation region
Name:Senp3_1
Description:Mus musculus SUMO/sentrin specific peptidase 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,681,943 - 69,682,003EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2158736 AgrOrtholog
Ensembl Genes ENSMUSG00000005204 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005336 ENTREZGENE
  ENSMUST00000005336.9 UniProtKB/Swiss-Prot
  ENSMUST00000066760 ENTREZGENE
  ENSMUST00000066760.8 UniProtKB/Swiss-Prot
  ENSMUST00000134942.2 UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C48_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SENP3_5_cons_dom UniProtKB/Swiss-Prot
KEGG Report mmu:80886 UniProtKB/Swiss-Prot
MGD MGI:2158736 ENTREZGENE
NCBI Gene 80886 ENTREZGENE
PANTHER PTHR12606:SF16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SENTRIN/SUMO-SPECIFIC PROTEASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Peptidase_C48 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SENP3_5_N UniProtKB/Swiss-Prot
PhenoGen Senp3 PhenoGen
PROSITE ULP_PROTEASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6Z9L5_MOUSE UniProtKB/TrEMBL
  Q5F2A5 ENTREZGENE
  Q8BRD5 ENTREZGENE
  Q8C2H5 ENTREZGENE
  Q9EP97 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5F2A5 UniProtKB/Swiss-Prot
  Q8BRD5 UniProtKB/Swiss-Prot
  Q8C2H5 UniProtKB/Swiss-Prot