Sox15 (SRY (sex determining region Y)-box 15) - Rat Genome Database

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Gene: Sox15 (SRY (sex determining region Y)-box 15) Mus musculus
Analyze
Symbol: Sox15
Name: SRY (sex determining region Y)-box 15
RGD ID: 1323789
MGI Page MGI
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Involved in several processes, including positive regulation of G0 to G1 transition; positive regulation of satellite cell activation involved in skeletal muscle regeneration; and trophoblast giant cell differentiation. Acts upstream of or within several processes, including myoblast development; negative regulation of striated muscle tissue development; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Part of transcription regulator complex. Is expressed in several structures, including early conceptus; genitourinary system; gut; incisor; and integumental system. Orthologous to human SOX15 (SRY-box transcription factor 15).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein SOX-15; protein SOX-16; Sox16; SRY (sex determining region Y)-box 16; SRY-box containing gene 15; SRY-box containing gene 16; SRY-box transcription factor 15; transcription factor SOX-15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,545,863 - 69,547,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,546,140 - 69,547,553 (+)EnsemblGRCm39 Ensembl
GRCm381169,655,037 - 69,656,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,655,314 - 69,656,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,468,875 - 69,470,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,471,568 - 69,472,816 (+)NCBIMGSCv36mm8
MGSCv361170,239,480 - 70,240,728 (+)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8479922   PMID:8921394   PMID:9540826   PMID:10349636   PMID:10524236   PMID:10821863   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932  
PMID:12815626   PMID:12915303   PMID:14610273   PMID:15367664   PMID:15618518   PMID:15863505   PMID:16141072   PMID:16141073   PMID:16306355   PMID:16325481   PMID:16759287   PMID:16971476  
PMID:17363903   PMID:17448459   PMID:18287559   PMID:18393569   PMID:18799693   PMID:19489079   PMID:20059953   PMID:20211142   PMID:20412781   PMID:21267068   PMID:21731673   PMID:21873635  
PMID:22344693   PMID:28942923   PMID:30871468  


Genomics

Comparative Map Data
Sox15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,545,863 - 69,547,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,546,140 - 69,547,553 (+)EnsemblGRCm39 Ensembl
GRCm381169,655,037 - 69,656,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,655,314 - 69,656,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,468,875 - 69,470,123 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,471,568 - 69,472,816 (+)NCBIMGSCv36mm8
MGSCv361170,239,480 - 70,240,728 (+)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
SOX15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,588,178 - 7,590,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,588,178 - 7,590,094 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,491,496 - 7,493,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,432,222 - 7,434,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 34177,432,221 - 7,434,212NCBI
Celera177,517,821 - 7,519,811 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,385,660 - 7,387,650 (-)NCBIHuRef
CHM1_1177,500,429 - 7,502,419 (-)NCBICHM1_1
T2T-CHM13v2.0177,492,428 - 7,494,344 (-)NCBIT2T-CHM13v2.0
Sox15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,871,793 - 54,873,497 (+)NCBIGRCr8
mRatBN7.21054,373,045 - 54,374,749 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,372,403 - 54,376,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,035,680 - 59,037,384 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,524,232 - 58,525,936 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,031,837 - 54,033,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,260,514 - 56,263,503 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,260,514 - 56,263,503 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,006,152 - 56,009,141 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,473,056 - 56,476,045 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,486,448 - 56,487,721 (+)NCBI
Celera1053,528,127 - 53,531,116 (+)NCBICelera
Cytogenetic Map10q24NCBI
Sox15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,333,643 - 9,335,498 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,333,620 - 9,335,498 (+)NCBIChiLan1.0ChiLan1.0
SOX15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,182,906 - 15,185,226 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,148,974 - 17,151,038 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,619,804 - 7,621,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,606,086 - 7,608,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,606,086 - 7,608,632 (-)Ensemblpanpan1.1panPan2
SOX15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,507,869 - 32,509,763 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,508,074 - 32,509,333 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,647,372 - 32,649,216 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,613,127 - 32,614,971 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,613,307 - 32,614,566 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,580,671 - 32,582,515 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,537,129 - 32,538,973 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,716,245 - 32,718,089 (-)NCBIUU_Cfam_GSD_1.0
Sox15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,391,690 - 47,393,612 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595861,223 - 867,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595865,878 - 868,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,882,840 - 52,885,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,288,402 - 55,291,398 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOX15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,965,969 - 6,967,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,962,350 - 6,967,799 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,440,279 - 14,442,829 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sox15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,202,988 - 10,204,358 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,202,988 - 10,204,808 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sox15
34 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:144
Interacting mature miRNAs:153
Transcripts:ENSMUST00000047373
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
Sox15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,655,480 - 69,656,558UniSTSGRCm38
MGSCv371169,468,982 - 69,470,060UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1139.0UniSTS
cM Map1139.0UniSTS
UniSTS:491279  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,655,313 - 69,656,660UniSTSGRCm38
MGSCv371169,468,815 - 69,470,162UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1139.0UniSTS
Sox15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,655,819 - 69,656,569UniSTSGRCm38
MGSCv371169,469,321 - 69,470,071UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1139.0UniSTS
Sox15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,655,727 - 69,656,511UniSTSGRCm38
MGSCv371169,469,229 - 69,470,013UniSTSGRCm37
Cytogenetic Map11B3UniSTS
Sox15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB014474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB025354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF182945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY965024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU758023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L29084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X70909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X98369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000047373   ⟹   ENSMUSP00000048524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,546,140 - 69,547,553 (+)Ensembl
GRCm38.p6 Ensembl1169,655,314 - 69,656,727 (+)Ensembl
RefSeq Acc Id: NM_009235   ⟹   NP_033261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,545,863 - 69,547,553 (+)NCBI
GRCm381169,655,037 - 69,656,727 (+)ENTREZGENE
MGSCv371169,468,875 - 69,470,123 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033261   ⟸   NM_009235
- UniProtKB: Q920T1 (UniProtKB/Swiss-Prot),   Q91V43 (UniProtKB/Swiss-Prot),   Q91V00 (UniProtKB/Swiss-Prot),   Q62246 (UniProtKB/Swiss-Prot),   P70418 (UniProtKB/Swiss-Prot),   O70204 (UniProtKB/Swiss-Prot),   Q9JLG2 (UniProtKB/Swiss-Prot),   Q62247 (UniProtKB/Swiss-Prot),   P43267 (UniProtKB/Swiss-Prot),   Q5F2B2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000048524   ⟸   ENSMUST00000047373
Protein Domains
HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43267-F1-model_v2 AlphaFold P43267 1-231 view protein structure

Promoters
RGD ID:6822207
Promoter ID:MM_KWN:8094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Lung,   MEF_B6
Transcripts:L29084_SOX16,   OTTMUST00000013405
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,468,021 - 69,469,232 (+)MPROMDB
RGD ID:8675194
Promoter ID:EPDNEW_M15628
Type:initiation region
Name:Sox15_1
Description:Mus musculus SRY -box 15 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,655,037 - 69,655,097EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98363 AgrOrtholog
Ensembl Genes ENSMUSG00000041287 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047373 ENTREZGENE
  ENSMUST00000047373.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot
InterPro HMG_box_dom UniProtKB/Swiss-Prot
  HMG_box_dom_sf UniProtKB/Swiss-Prot
  SRY-related_HMG-box_TFs UniProtKB/Swiss-Prot
KEGG Report mmu:20670 UniProtKB/Swiss-Prot
MGD MGI:98363 ENTREZGENE
NCBI Gene 20670 ENTREZGENE
PANTHER PTHR10270:SF45 UniProtKB/Swiss-Prot
  SOX TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
Pfam HMG_box UniProtKB/Swiss-Prot
PhenoGen Sox15 PhenoGen
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot
SMART HMG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot
UniProt O70204 ENTREZGENE
  P43267 ENTREZGENE
  P70418 ENTREZGENE
  Q5F2B2 ENTREZGENE, UniProtKB/TrEMBL
  Q62246 ENTREZGENE
  Q62247 ENTREZGENE
  Q91V00 ENTREZGENE
  Q91V43 ENTREZGENE
  Q920T1 ENTREZGENE
  Q9JLG2 ENTREZGENE
  SOX15_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O70204 UniProtKB/Swiss-Prot
  P70418 UniProtKB/Swiss-Prot
  Q62246 UniProtKB/Swiss-Prot
  Q62247 UniProtKB/Swiss-Prot
  Q91V00 UniProtKB/Swiss-Prot
  Q91V43 UniProtKB/Swiss-Prot
  Q920T1 UniProtKB/Swiss-Prot
  Q9JLG2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-05 Sox15  SRY (sex determining region Y)-box 15  Sox16  SRY (sex determining region Y)-box 16  Data merged from RGD:1607168 737654 PROVISIONAL
2013-11-26 Sox15  SRY (sex determining region Y)-box 15    SRY-box containing gene 15  Symbol and/or name change 5135510 APPROVED
2013-11-26 Sox16  SRY (sex determining region Y)-box 16    SRY-box containing gene 16  Symbol and/or name change 5135510 APPROVED