Nt5c3 (5'-nucleotidase, cytosolic III)

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Gene: Nt5c3 (5'-nucleotidase, cytosolic III) Mus musculus

Analyze

Symbol:

Nt5c3

Name:

5'-nucleotidase, cytosolic III

RGD ID:

1323775

MGI Page

MGI

Description:

Predicted to have 5'-nucleotidase activity. Predicted to be involved in adenosine metabolic process and defense response to virus. Localizes to mitochondrion. Is expressed in several structures, including alimentary system; hemolymphoid system; liver; nervous system; and respiratory system. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA); PARTICIPATES IN monoterpenoid biosynthetic pathway; niacin metabolic pathway; purine metabolic pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

1600024P05Rik; 2610206B05Rik; 3110004A18Rik; 5'-nucleotidase, pyrimidine; 7-methylguanosine nucleotidase; 7-methylguanosine phosphate-specific 5'-nucleotidase; AI842776; cN-III; cytosolic 5'-nucleotidase 3; cytosolic 5'-nucleotidase 3A; cytosolic 5'-nucleotidase III; lupin; Nt5c3a; Nt5y; p36; P5'N-1; P5N-1; PN-1; PN-I; PSN1; pyrimidine 5'-nucleotidase 1; UMPH; Umph-1; Umph1; uridine monophosphatase 1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Nt5c3a (5'-nucleotidase, cytosolic IIIA)	HGNC	NCBI, OMA, HomoloGene, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Nt5c3a (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nt5c3a (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nt5c3a (5'-nucleotidase, cytosolic IIIA)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NT5C3B (5'-nucleotidase, cytosolic IIIB)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Nt5c3a (5'-nucleotidase, cytosolic IIIA)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Homo sapiens (human):	NT5C3A (5'-nucleotidase, cytosolic IIIA)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	nt5c3a (5'-nucleotidase, cytosolic IIIA)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F25B5.3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	cN-IIIB	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	Y10G11A.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	56,859,385 - 56,900,993 (-)	NCBI	GRCm39		mm39
GRCm38	6	56,882,400 - 56,924,008 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	56,882,400 - 56,923,932 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	56,832,394 - 56,873,926 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	56,811,983 - 56,853,407 (-)	NCBI			mm8
Celera	6	57,644,243 - 57,685,811 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chloracne (ISO)

congenital nonspherocytic hemolytic anemia (ISO)

hemolytic anemia (ISS)

pleomorphic xanthoastrocytoma (ISO)

Uridine 5-Prime Monophosphate Hydrolase Deficiency, Hemolytic Anemia due to (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (ISO)

2-butoxyethanol (EXP)

2-hydroxypropanoic acid (ISO)

acetamide (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

alpha-pinene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

chromium(6+) (EXP)

cisplatin (EXP)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (EXP)

fipronil (ISO)

lead(0) (EXP,ISO)

lead(2+) (EXP,ISO)

magnesium atom (EXP)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

tetrachloromethane (EXP)

thalidomide (EXP)

tunicamycin (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenosine metabolic process (ISO)

CMP catabolic process (IDA)

dCMP catabolic process (ISO)

defense response to virus (ISO)

dephosphorylation (IBA)

dTMP catabolic process (ISO)

dUMP catabolic process (ISO)

nucleotide metabolic process (IEA)

UMP catabolic process (ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (ISO)

endoplasmic reticulum (ISO)

mitochondrion (HDA)

Molecular Function

5'-nucleotidase activity (IBA,IDA,ISO,ISS)

hydrolase activity (IEA)

magnesium ion binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

monoterpenoid biosynthetic pathway (IEA)

niacin metabolic pathway (IEA)

purine metabolic pathway (IEA)

pyrimidine metabolic pathway (IEA)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	OMIM Disease Annotation Pipeline
5.	Pipeline to import KEGG annotations from KEGG into RGD
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:6301357	PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11180800	PMID:12477932	PMID:14610273	PMID:14681479	PMID:15489334	PMID:15782199
PMID:16141072	PMID:16141073	PMID:18614015	PMID:21267068	PMID:21873635	PMID:22925580	PMID:23992312	PMID:23992316	PMID:32325033

Genomics

Comparative Map Data

Nt5c3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	56,859,385 - 56,900,993 (-)	NCBI	GRCm39		mm39
GRCm38	6	56,882,400 - 56,924,008 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	56,882,400 - 56,923,932 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	56,832,394 - 56,873,926 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	56,811,983 - 56,853,407 (-)	NCBI			mm8
Celera	6	57,644,243 - 57,685,811 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI

NT5C3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	33,014,114 - 33,062,797 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	33,014,113 - 33,062,776 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	33,053,725 - 33,102,409 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	33,053,725 - 33,102,388 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	33,020,267 - 33,068,934 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	32,826,996 - 32,853,758	NCBI
Celera	7	33,035,567 - 33,084,229 (-)	NCBI
Cytogenetic Map	7	p14.3	NCBI
HuRef	7	32,932,970 - 32,981,660 (-)	NCBI		HuRef
CHM1_1	7	33,053,595 - 33,102,290 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	33,098,270 - 33,146,958 (-)	NCBI

Nt5c3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	86,161,642 - 86,204,671 (-)	NCBI
Rnor_6.0 Ensembl	4	87,237,949 - 87,281,157 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	87,238,325 - 87,281,234 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	151,889,315 - 151,932,213 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	85,870,878 - 85,913,812 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	86,114,353 - 86,157,335 (-)	NCBI
Celera	4	80,991,357 - 81,034,409 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

Nt5c3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955617	239,631 - 293,178 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955617	240,132 - 293,278 (-)	NCBI	ChiLan1.0	ChiLan1.0

NT5C3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	34,009,467 - 34,057,740 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	34,009,467 - 34,057,740 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	33,608,746 - 33,657,380 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

NT5C3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	14	45,077,099 - 45,131,905 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	14	45,076,487 - 45,132,000 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Nt5c3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936478	8,785,984 - 8,834,776 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NT5C3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	40,441,102 - 40,483,376 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	40,440,890 - 40,483,043 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	44,383,395 - 44,425,325 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NT5C3A
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	25,362,142 - 25,409,483 (+)	NCBI
ChlSab1.1 Ensembl	21	25,362,118 - 25,411,935 (+)	Ensembl

Nt5c3a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624896	2,881,217 - 2,935,514 (+)	NCBI

Position Markers

BB491051

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	56,882,561 - 56,882,672	UniSTS	GRCm38
MGSCv37	6	56,832,555 - 56,832,666	UniSTS	GRCm37
Celera	6	57,644,404 - 57,644,515	UniSTS
Cytogenetic Map	6	B3	UniSTS
Whitehead/MRC_RH	6	563.92	UniSTS

AW556929

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	56,882,653 - 56,882,791	UniSTS	GRCm38
MGSCv37	6	56,832,647 - 56,832,785	UniSTS	GRCm37
Celera	6	57,644,496 - 57,644,634	UniSTS
Cytogenetic Map	6	B3	UniSTS
Whitehead/MRC_RH	6	566.96	UniSTS

AI842776

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	56,882,561 - 56,882,680	UniSTS	GRCm38
MGSCv37	6	56,832,555 - 56,832,674	UniSTS	GRCm37
Celera	6	57,644,404 - 57,644,523	UniSTS
Cytogenetic Map	6	B3	UniSTS
Whitehead/MRC_RH	6	563.92	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80600000	Mouse
1357442	Dbts1_m	diabetes 1 (mouse)			Not determined		6	18234148	73387692	Mouse
10412213	Sxbq2_m	SGC/Knj cross B6 QTL 2 (mouse)			Not determined		6	19912686	71322775	Mouse
14700690	Ccs6_m	colon cancer susceptibility 6 (mouse)					6	23800000	57800000	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	25000000	80000000	Mouse
4141988	Obrq3_m	obesity resistance QTL 3 (mouse)			Not determined			28314059	62314181	Mouse
4141454	Obrq4_m	obesity resistance QTL 4 (mouse)			Not determined			31726565	65726677	Mouse
12880425	V25Dq5_m	vitamin D inactive form serum level QTL 5 (mouse)					6	32700000	66700000	Mouse
4141782	Mrdq5_m	modifier of retinal degeneration QTL 5 (mouse)			Not determined			32850650	78238974	Mouse
1300959	Lxw2_m	lupus BXSB x NZW 2 (mouse)			Not determined		6	33895281	67895420	Mouse
11252142	Mom12_m	Modifier of Min 12 (mouse)					6	33895281	67895420	Mouse
1300767	Aliq4_m	acute lung injury QTL 4 (mouse)			Not determined		6	36296347	70296450	Mouse
1357539	Bsbob3_m	BSB obesity 3 (mouse)			Not determined		6	36471471	70471591	Mouse
4141094	Hrtr1_m	heart rate 1 (mouse)			Not determined			36764478	70764478	Mouse
14746995	Manh60_m	mandible shape 60 (mouse)					6	37225677	71225677	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1301326	Trbv4c2_m	T cell receptor beta variable 4 (mouse)			Not determined		6	40891296	71379171	Mouse
12880424	V25Dq4_m	vitamin D inactive form serum level QTL 4 (mouse)					6	41600000	75600000	Mouse
1301266	Lmr4_m	leishmaniasis resistance 4 (mouse)			Not determined		6	42116373	76116515	Mouse
11040600	Lmr4c_m	leishmaniasis resistance 4c (mouse)					6	42116373	76116515	Mouse
11040601	Lmr4a_m	leishmaniasis resistance 4a (mouse)					6	42116373	76116515	Mouse
11533915	Mts4_m	mammary tumor susceptibility 4 (mouse)					6	42116373	76116515	Mouse
12910785	Pwgrq16_m	post-weaning growth rate QTL 16 (mouse)					6	43826813	77811523	Mouse
12910798	Pwgrq5_m	pre-weaning growth rate QTL 5 (mouse)					6	43826813	77811523	Mouse
12910802	Pwbwq12_m	post-weaning body weight QTL 12 (mouse)					6	43826813	77811523	Mouse
12910807	Pwbwq11_m	post-weaning body weight QTL 11 (mouse)					6	43826813	77811523	Mouse
12910809	Pwbwq10_m	post-weaning body weight QTL 10 (mouse)					6	43826813	77811523	Mouse
12910820	Ogrq3_m	overall growth rate QTL 3 (mouse)					6	43826813	77811523	Mouse
10043885	Cia6c_m	collagen induced arthritis QTL 6c (mouse)			Not determined		6	44465871	71119467	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
4140983	Srilp_m	sleep response to influenza, light phase (mouse)			Not determined			48726556	75447710	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	971
Count of miRNA genes:	513
Interacting mature miRNAs:	604
Transcripts:	ENSMUST00000031793, ENSMUST00000101367, ENSMUST00000126137, ENSMUST00000127725, ENSMUST00000134577, ENSMUST00000135558, ENSMUST00000138647, ENSMUST00000152447
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001252374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001360963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_026004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006505273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006505274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006505275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006505276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011241111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX527194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY080680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY261587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB571852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX734167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000031793 ⟹ ENSMUSP00000031793

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,882,400 - 56,923,932 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000101367 ⟹ ENSMUSP00000098918

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,882,400 - 56,901,886 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000126137

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,886,665 - 56,889,863 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000127725

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,895,794 - 56,901,883 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000134577

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,892,801 - 56,923,857 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000135558 ⟹ ENSMUSP00000145230

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,882,984 - 56,923,876 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138647

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,891,539 - 56,923,890 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000152447 ⟹ ENSMUSP00000138606

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,882,951 - 56,923,819 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000205087 ⟹ ENSMUSP00000145410

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	56,884,791 - 56,923,724 (-)	Ensembl

RefSeq Acc Id:

NM_001252374 ⟹ NP_001239303

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,878,871 (-)	NCBI
GRCm38	6	56,882,400 - 56,901,886 (-)	NCBI
Celera	6	57,644,243 - 57,685,811 (-)	ENTREZGENE
cM Map	6		ENTREZGENE

Sequence:

show sequence

TTTTCTTTTGCTGGTGCTGCCGTACGTAGCTTGTCCGGTTACCTTCAGAAAGATTGGATAACCA
CGAAATGACTAATCAGGAGTCTGCTGTCCATTTGAAAATGATGCCAGAATTTCAGAAAAGCTCA
GTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTCATTAAAGGAGGCGCTG
CCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACAATGGGAAAAG
ATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAAGAAAG
TTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTGTTCTCACCGTGGAAGAGA
AGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCTTATTGAACAAGGCATACC
AAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTCAAGGAAGGATATGAGAAT
TTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTTCTGCTGGTATTGGTGATG
TACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGTCAAAGTAGTGTCAAACTT
CATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAATCCACGTGTTCAAC
AAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGAAAGACAACAGCAACATCA
TTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGTAGCCAATGTTGAACACAT
TCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAAAAATACATGGACTCTTAT
GATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTTACAGAAGACATTAT
AAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGGTCAGGCACTGTCCATTTTGA
GGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAACTTTTCCCTTTTCCCAACAGA
CGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCCCACCTCCGTCACTATACTCA
GCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTAGAAAGATGGCTCCCTTTTCC
AAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATTCTCCCAGGTGGGTGTATAAG
GGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAACCACTGCTAGCTTTGAAATT
GGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTGTTTATTTTGTCTATAAAATA
CATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCATCGCTAACATTGCAAATACTC
TGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001360963 ⟹ NP_001347892

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,917 (-)	NCBI
GRCm38	6	56,882,400 - 56,923,932 (-)	NCBI

Sequence:

show sequence

GGGGCCTCCTCGGTTTCCCCCGCGCGGGGCGGGGCTCCGGGGAAGTGTGCGGCTTGCGGCCGCG
CCCCTGGGCTCGTACCCGCGGATCCCGGGCTTCCGCGCCGAGAGCACGCGGGCCTGTCAATGGA
CCGCGCGGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGC
GTGGTGCTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCG
AAATGAAGATTGGATAACCACGAAATGACTAATCAGGAGTCTGCTGTCCATTTGAAAATGATGC
CAGAATTTCAGAAAAGCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGG
TCTCATTAAAGGAGGCGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGG
TTTTCCTACAATGGGAAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTA
CAGATGAATGTCGAAGAAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCC
TGTTCTCACCGTGGAAGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTG
CTTATTGAACAAGGCATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGC
TCAAGGAAGGATATGAGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATT
TTCTGCTGGTATTGGTGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAAC
GTCAAAGTAGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAG
AGTTAATCCACGTGTTCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCT
GAAAGACAACAGCAACATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGC
GTAGCCAATGTTGAACACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAG
AAAAATACATGGACTCTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTC
AATTTTACAGAAGACATTATAAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGG
TCAGGCACTGTCCATTTTGAGGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAAC
TTTTCCCTTTTCCCAACAGACGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCC
CACCTCCGTCACTATACTCAGCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTA
GAAAGATGGCTCCCTTTTCCAAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATT
CTCCCAGGTGGGTGTATAAGGGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAA
CCACTGCTAGCTTTGAAATTGGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTG
TTTATTTTGTCTATAAAATACATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCAT
CGCTAACATTGCAAATACTCTGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_026004 ⟹ NP_080280

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,917 (-)	NCBI
GRCm38	6	56,882,400 - 56,923,932 (-)	ENTREZGENE
MGSCv37	6	56,832,394 - 56,873,926 (-)	RGD
Celera	6	57,644,243 - 57,685,811 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GGGGCCTCCTCGGTTTCCCCCGCGCGGGGCGGGGCTCCGGGGAAGTGTGCGGCTTGCGGCCGCG
CCCCTGGGCTCGTACCCGCGGATCCCGGGCTTCCGCGCCGAGAGCACGCGGGCCTGTCAATGGA
CCGCGCGGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGC
GTGGTGCTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCG
AAATGATGCCAGAATTTCAGAAAAGCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAAT
TATCTGTGGTCTCATTAAAGGAGGCGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACT
CTAAGTAGGTTTTCCTACAATGGGAAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTA
AGCTTGTTACAGATGAATGTCGAAGAAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGA
AGTTGATCCTGTTCTCACCGTGGAAGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATCT
CACGGTTTGCTTATTGAACAAGGCATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTG
ACGTTATGCTCAAGGAAGGATATGAGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGT
GTTCATATTTTCTGCTGGTATTGGTGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTAT
CACTCAAACGTCAAAGTAGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGAT
TCAAAGGAGAGTTAATCCACGTGTTCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTT
CAGCCAGCTGAAAGACAACAGCAACATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATG
GCCGATGGCGTAGCCAATGTTGAACACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACG
AGCTTTTAGAAAAATACATGGACTCTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGT
TGTCAACTCAATTTTACAGAAGACATTATAAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGT
ACACCTGGGTCAGGCACTGTCCATTTTGAGGAAAGACTCTTTCTTATTTATAAAACAGTCTTGC
TCCTGGAACTTTTCCCTTTTCCCAACAGACGATCTTCAGACGTGTGGAACCTGTGAACCACGGC
CCCTCTTCCCACCTCCGTCACTATACTCAGCAGAATTTTTAAGTCATTAAAAATTATCTTAAAG
CCAAAATTAGAAAGATGGCTCCCTTTTCCAAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTC
TAGGGCATTCTCCCAGGTGGGTGTATAAGGGCGCAGAAGACGCTCTCTGGATGTATTATGTTCC
TGATTTTAACCACTGCTAGCTTTGAAATTGGGGTGGAGTATGGAGACATCATCTTCTGAAATTG
TTTTATTTGTTTATTTTGTCTATAAAATACATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGG
TGTCCGCATCGCTAACATTGCAAATACTCTGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAA
GCTTTTCTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006505273 ⟹ XP_006505336

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,892 (-)	NCBI
GRCm38	6	56,882,400 - 56,923,905 (-)	NCBI

Sequence:

show sequence

GGCGGGGCTCCGGGGAAGTGTGCGGCTTGCGGCCGCGCCCCTGGGCTCGTACCCGCGGATCCCG
GGCTTCCGCGCCGAGAGCACGCGGGCCTGTCAATGGACCGCGCGGCCGTGGCGCGAGTGGGCGC
GGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGCGTGGTGCTGGCCCAGTACATATTCACC
TTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCGAAATGGAAATCAGAGATGGCACTGGTA
GCAGTATTTGAGGAGTAACTACCATAACTAGTCAAGTTTGAAGAAAATGCATTTCAAGATAAGA
GATAAGATTGGATAACCACGAAATGACTAATCAGGAGTCTGCTGTCCATTTGAAAATGATGCCA
GAATTTCAGAAAAGCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTC
TCATTAAAGGAGGCGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTT
TTCCTACAATGGGAAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACA
GATGAATGTCGAAGAAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTG
TTCTCACCGTGGAAGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCT
TATTGAACAAGGCATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTC
AAGGAAGGATATGAGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTT
CTGCTGGTATTGGTGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGT
CAAAGTAGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAG
TTAATCCACGTGTTCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGA
AAGACAACAGCAACATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGT
AGCCAATGTTGAACACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAA
AAATACATGGACTCTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAA
TTTTACAGAAGACATTATAAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGGTC
AGGCACTGTCCATTTTGAGGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAACTT
TTCCCTTTTCCCAACAGACGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCCCA
CCTCCGTCACTATACTCAGCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTAGA
AAGATGGCTCCCTTTTCCAAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATTCT
CCCAGGTGGGTGTATAAGGGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAACC
ACTGCTAGCTTTGAAATTGGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTGTT
TATTTTGTCTATAAAATACATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCATCG
CTAACATTGCAAATACTCTGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTAAA
A

hide sequence

RefSeq Acc Id:

XM_006505274 ⟹ XP_006505337

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,896 (-)	NCBI
GRCm38	6	56,882,400 - 56,923,926 (-)	NCBI

Sequence:

show sequence

TCCTCGGTTTCCCCCGCGCGGGGCGGGGCTCCGGGGAAGTGTGCGGCTTGCGGCCGCGCCCCTG
GGCTCGTACCCGCGGATCCCGGGCTTCCGCGCCGAGAGCACGCGGGCCTGTCAATGGACCGCGC
GGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGCGTGGTG
CTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCGAAATGG
AAATCAGAGATGGCACTGGTAGCAGTATTTGAGGAGTAACTACCATAACTAGTCAAGTTTGAAG
AAAATGCATTTCAAGATAAGAGATATGCCAGAATTTCAGAAAAGCTCAGTTCGTATCAAGAACC
CTACAAGAGTAGAAGAAATTATCTGTGGTCTCATTAAAGGAGGCGCTGCCAAACTTCAGATAAT
AACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACAATGGGAAAAGATGCCCAACGTGTCAT
AATATCATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAAGAAAGTTACTGCAGCTAAAGG
AGCAGTATTATGCTATTGAAGTTGATCCTGTTCTCACCGTGGAAGAGAAGTTCCCTTACATGGT
AGAGTGGTATACCAAATCTCACGGTTTGCTTATTGAACAAGGCATACCAAAAGCCAAACTTAAA
GAGATTGTGGCTGACTCTGACGTTATGCTCAAGGAAGGATATGAGAATTTCTTCGGTAAACTTC
AACAGCACGGTATCCCTGTGTTCATATTTTCTGCTGGTATTGGTGATGTACTTGAAGAAGTTAT
CCGGCAGGCTGGAGTTTATCACTCAAACGTCAAAGTAGTGTCAAACTTCATGGATTTTGATGAA
AATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAATCCACGTGTTCAACAAACACGATGGTGCCC
TGAAGAATACAGACTACTTCAGCCAGCTGAAAGACAACAGCAACATCATTCTGCTCGGGGACTC
CCAAGGAGACCTAAGAATGGCCGATGGCGTAGCCAATGTTGAACACATTCTGAAAATTGGTTAT
CTGAATGACAGAGTAGACGAGCTTTTAGAAAAATACATGGACTCTTATGATATTGTTTTAGTAA
AAGAAGAATCATTGGAGGTTGTCAACTCAATTTTACAGAAGACATTATAAACAAGCCATCGTGA
GAAGACTTCCCCCAGGGGTACACCTGGGTCAGGCACTGTCCATTTTGAGGAAAGACTCTTTCTT
ATTTATAAAACAGTCTTGCTCCTGGAACTTTTCCCTTTTCCCAACAGACGATCTTCAGACGTGT
GGAACCTGTGAACCACGGCCCCTCTTCCCACCTCCGTCACTATACTCAGCAGAATTTTTAAGTC
ATTAAAAATTATCTTAAAGCCAAAATTAGAAAGATGGCTCCCTTTTCCAAAGTGAGTTTTGTAG
TTTGGTGTTCTGCAGTTTCTAGGGCATTCTCCCAGGTGGGTGTATAAGGGCGCAGAAGACGCTC
TCTGGATGTATTATGTTCCTGATTTTAACCACTGCTAGCTTTGAAATTGGGGTGGAGTATGGAG
ACATCATCTTCTGAAATTGTTTTATTTGTTTATTTTGTCTATAAAATACATTTGCCAGGAAGTT
GTGTCTTAAAAACTGTTGGTGTCCGCATCGCTAACATTGCAAATACTCTGTGTGAAGCACTGAG
AATAAACCAGAAAAAGAAAGCTTTTCTAAAA

hide sequence

RefSeq Acc Id:

XM_006505275 ⟹ XP_006505338

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,899 (-)	NCBI
GRCm38	6	56,882,400 - 56,923,926 (-)	NCBI

Sequence:

show sequence

TCCTCGGTTTCCCCCGCGCGGGGCGGGGCTCCGGGGAAGTGTGCGGCTTGCGGCCGCGCCCCTG
GGCTCGTACCCGCGGATCCCGGGCTTCCGCGCCGAGAGCACGCGGGCCTGTCAATGGACCGCGC
GGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCGGTGGTAGCAGGCGTGGTG
CTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGACCAAGATCATCGAAATGG
GTTGTTTTGATGTTACTGTTGTTCCATCTGACTTGAGCATGCATGATGCCAGAATTTCAGAAAA
GCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTCATTAAAGGAGG
CGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACAATGGG
AAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAA
GAAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTGTTCTCACCGTGGA
AGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCTTATTGAACAAGGC
ATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTCAAGGAAGGATATG
AGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTTCTGCTGGTATTGG
TGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGTCAAAGTAGTGTCA
AACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAATCCACGTGT
TCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGAAAGACAACAGCAA
CATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGTAGCCAATGTTGAA
CACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAAAAATACATGGACT
CTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTTACAGAAGAC
ATTATAAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGGTCAGGCACTGTCCAT
TTTGAGGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAACTTTTCCCTTTTCCCA
ACAGACGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCCCACCTCCGTCACTAT
ACTCAGCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTAGAAAGATGGCTCCCT
TTTCCAAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATTCTCCCAGGTGGGTGT
ATAAGGGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAACCACTGCTAGCTTTG
AAATTGGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTGTTTATTTTGTCTATA
AAATACATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCATCGCTAACATTGCAAA
TACTCTGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTAAAA

hide sequence

RefSeq Acc Id:

XM_006505276 ⟹ XP_006505339

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,878,922 (-)	NCBI
GRCm38	6	56,882,400 - 56,901,941 (-)	NCBI

Sequence:

show sequence

GGGAACCGCCCTCCTTGCACCTTGTGCTATATTAGTGCTTCTCAGACAGGAAGAATTTTCTTTT
GCTGGTGCTGCCGTACGTAGCTTGTCCGGTTACCTTCAGAATGCCAGAATTTCAGAAAAGCTCA
GTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTCATTAAAGGAGGCGCTG
CCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACAATGGGAAAAG
ATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAAGAAAG
TTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTGTTCTCACCGTGGAAGAGA
AGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCTTATTGAACAAGGCATACC
AAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTCAAGGAAGGATATGAGAAT
TTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTTCTGCTGGTATTGGTGATG
TACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGTCAAAGTAGTGTCAAACTT
CATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAATCCACGTGTTCAAC
AAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGAAAGACAACAGCAACATCA
TTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGTAGCCAATGTTGAACACAT
TCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAAAAATACATGGACTCTTAT
GATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTTACAGAAGACATTAT
AAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGGTCAGGCACTGTCCATTTTGA
GGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAACTTTTCCCTTTTCCCAACAGA
CGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCCCACCTCCGTCACTATACTCA
GCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTAGAAAGATGGCTCCCTTTTCC
AAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATTCTCCCAGGTGGGTGTATAAG
GGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAACCACTGCTAGCTTTGAAATT
GGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTGTTTATTTTGTCTATAAAATA
CATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCATCGCTAACATTGCAAATACTC
TGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTAAAA

hide sequence

RefSeq Acc Id:

XM_011241111 ⟹ XP_011239413

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	56,859,385 - 56,900,993 (-)	NCBI
GRCm38	6	56,882,400 - 56,924,008 (-)	NCBI

Sequence:

show sequence

CACTATAAGGGCGGGATTCCGGACGCGGACCTCTTAGTCTCCGCCCCGTCGTCCCCGCCCCTCA
CCTCTTCTGGGCGGGGCCTCCTCGGTTTCCCCCGCGCGGGGCGGGGCTCCGGGGAAGTGTGCGG
CTTGCGGCCGCGCCCCTGGGCTCGTACCCGCGGATCCCGGGCTTCCGCGCCGAGAGCACGCGGG
CCTGTCAATGGACCGCGCGGCCGTGGCGCGAGTGGGCGCGGTGGCGAGCGCCAGTGTGTGCGCG
GTGGTAGCAGGCGTGGTGCTGGCCCAGTACATATTCACCTTGAAGAGAAAAACGGGCCGCAAGA
CCAAGATCATCGAAATGGGTTGTTTTGATGTTACTGTTGTTCCATCTGACTTGAGCATGCATGA
AGATTGGATAACCACGAAATGACTAATCAGGAGTCTGCTGTCCATTTGAAAATGATGCCAGAAT
TTCAGAAAAGCTCAGTTCGTATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTCAT
TAAAGGAGGCGCTGCCAAACTTCAGATAATAACAGACTTTGACATGACTCTAAGTAGGTTTTCC
TACAATGGGAAAAGATGCCCAACGTGTCATAATATCATTGACAACTGTAAGCTTGTTACAGATG
AATGTCGAAGAAAGTTACTGCAGCTAAAGGAGCAGTATTATGCTATTGAAGTTGATCCTGTTCT
CACCGTGGAAGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATCTCACGGTTTGCTTATT
GAACAAGGCATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTTATGCTCAAGG
AAGGATATGAGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTTCTGC
TGGTATTGGTGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGTCAAA
GTAGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAA
TCCACGTGTTCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGAAAGA
CAACAGCAACATCATTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGTAGCC
AATGTTGAACACATTCTGAAAATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAAAAAT
ACATGGACTCTTATGATATTGTTTTAGTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTT
ACAGAAGACATTATAAACAAGCCATCGTGAGAAGACTTCCCCCAGGGGTACACCTGGGTCAGGC
ACTGTCCATTTTGAGGAAAGACTCTTTCTTATTTATAAAACAGTCTTGCTCCTGGAACTTTTCC
CTTTTCCCAACAGACGATCTTCAGACGTGTGGAACCTGTGAACCACGGCCCCTCTTCCCACCTC
CGTCACTATACTCAGCAGAATTTTTAAGTCATTAAAAATTATCTTAAAGCCAAAATTAGAAAGA
TGGCTCCCTTTTCCAAAGTGAGTTTTGTAGTTTGGTGTTCTGCAGTTTCTAGGGCATTCTCCCA
GGTGGGTGTATAAGGGCGCAGAAGACGCTCTCTGGATGTATTATGTTCCTGATTTTAACCACTG
CTAGCTTTGAAATTGGGGTGGAGTATGGAGACATCATCTTCTGAAATTGTTTTATTTGTTTATT
TTGTCTATAAAATACATTTGCCAGGAAGTTGTGTCTTAAAAACTGTTGGTGTCCGCATCGCTAA
CATTGCAAATACTCTGTGTGAAGCACTGAGAATAAACCAGAAAAAGAAAGCTTTTCTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001239303	(Get FASTA)	NCBI Sequence Viewer
	NP_001347892	(Get FASTA)	NCBI Sequence Viewer
	NP_080280	(Get FASTA)	NCBI Sequence Viewer
	XP_006505336	(Get FASTA)	NCBI Sequence Viewer
	XP_006505337	(Get FASTA)	NCBI Sequence Viewer
	XP_006505338	(Get FASTA)	NCBI Sequence Viewer
	XP_006505339	(Get FASTA)	NCBI Sequence Viewer
	XP_011239413	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH38029	(Get FASTA)	NCBI Sequence Viewer
	BAB27677	(Get FASTA)	NCBI Sequence Viewer
	BAB27901	(Get FASTA)	NCBI Sequence Viewer
	EDL04719	(Get FASTA)	NCBI Sequence Viewer
	EDL04720	(Get FASTA)	NCBI Sequence Viewer
	EDL04721	(Get FASTA)	NCBI Sequence Viewer
	Q9D020	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_080280 ⟸ NM_026004
- Peptide Label:	isoform 1
- UniProtKB:	Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDRAAVARVGAVASASVCAVVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVE EIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYA IEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGI PVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALKNTD YFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESL EVVNSILQKTL hide sequence

RefSeq Acc Id:	NP_001239303 ⟸ NM_001252374
- Peptide Label:	isoform 2
- UniProtKB:	Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTNQESAVHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRC PTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPK AKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFM DFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHIL KIGYLNDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL hide sequence

RefSeq Acc Id:

XP_006505338 ⟸ XM_006505275

- Peptide Label:

isoform X3

- Sequence:

show sequence

MMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHNIIDNCK
LVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSD
VMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGF
KGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDE
LLEKYMDSYDIVLVKEESLEVVNSILQKTL

hide sequence

RefSeq Acc Id:

XP_006505337 ⟸ XM_006505274

- Peptide Label:

isoform X2

- Sequence:

show sequence

MHFKIRDMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHN
IIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKE
IVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDEN
GVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYL
NDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL

hide sequence

RefSeq Acc Id:	XP_006505336 ⟸ XM_006505273
- Peptide Label:	isoform X1
- UniProtKB:	Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTNQESAVHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRC PTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPK AKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFM DFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHIL KIGYLNDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL hide sequence

RefSeq Acc Id:

XP_006505339 ⟸ XM_006505276

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHNIIDNCKL
VTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDV
MLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFK
GELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDEL
LEKYMDSYDIVLVKEESLEVVNSILQKTL

hide sequence

RefSeq Acc Id:	XP_011239413 ⟸ XM_011241111
- Peptide Label:	isoform X1
- UniProtKB:	Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTNQESAVHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRC PTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPK AKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFM DFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHIL KIGYLNDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL hide sequence

RefSeq Acc Id:	NP_001347892 ⟸ NM_001360963
- Peptide Label:	isoform 2

RefSeq Acc Id:

ENSMUSP00000031793 ⟸ ENSMUST00000031793

RefSeq Acc Id:

ENSMUSP00000138606 ⟸ ENSMUST00000152447

RefSeq Acc Id:

ENSMUSP00000145410 ⟸ ENSMUST00000205087

RefSeq Acc Id:

ENSMUSP00000098918 ⟸ ENSMUST00000101367

RefSeq Acc Id:

ENSMUSP00000145230 ⟸ ENSMUST00000135558

Promoters

RGD ID:

6839707

Promoter ID:

MM_KWN:46131

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney

Transcripts:

OTTMUST00000056307

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	56,839,799 - 56,840,299 (-)	MPROMDB

RGD ID:

6839706

Promoter ID:

MM_KWN:46132

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_2Hour, BoneMarrow_4Hour

Transcripts:

ENSMUST00000116607

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	56,847,306 - 56,848,242 (-)	MPROMDB

RGD ID:

6839705

Promoter ID:

MM_KWN:46133

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Lung, Spleen

Transcripts:

ENSMUST00000101367, OTTMUST00000056167

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	56,851,711 - 56,852,211 (-)	MPROMDB

RGD ID:

6840151

Promoter ID:

MM_KWN:46135

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000056164, OTTMUST00000056165, OTTMUST00000056304, OTTMUST00000056305, OTTMUST00000056306, UC009CBS.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	56,873,701 - 56,874,407 (+)	MPROMDB

RGD ID:

6889830

Promoter ID:

EPDNEW_M8366

Type:

initiation region

Name:

Nt5c3_1

Description:

Mus musculus 5'-nucleotidase, cytosolic III , transcript variant3, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8367

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	56,901,876 - 56,901,936	EPDNEW

RGD ID:

6889832

Promoter ID:

EPDNEW_M8367

Type:

initiation region

Name:

Nt5c3_2

Description:

Mus musculus 5'-nucleotidase, cytosolic III , transcript variant3, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8366

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	56,923,857 - 56,923,917	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1927186	AgrOrtholog
Ensembl Genes	ENSMUSG00000029780	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000031793	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000098918	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000138606	UniProtKB/TrEMBL
	ENSMUSP00000145230	UniProtKB/TrEMBL
	ENSMUSP00000145410	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000031793	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000101367	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000135558	UniProtKB/TrEMBL
	ENSMUST00000152447	UniProtKB/TrEMBL
	ENSMUST00000205087	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1000	UniProtKB/Swiss-Prot
InterPro	HAD-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HAD_sf	UniProtKB/Swiss-Prot
	Pyrimidine_nucleotidase_eu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:107569	UniProtKB/Swiss-Prot
MGD	MGI:1927186	ENTREZGENE
NCBI Gene	107569	ENTREZGENE
Pfam	UMPH-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nt5c3	PhenoGen
Superfamily-SCOP	SSF56784	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	HAD-SF-IE	UniProtKB/Swiss-Prot
UniProt	5NT3A_MOUSE	UniProtKB/Swiss-Prot
	A0A0N4SVS9_MOUSE	UniProtKB/TrEMBL
	A0A0N4SW80_MOUSE	UniProtKB/TrEMBL
	Q9D020	ENTREZGENE
	S4R2D9_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q8CI05	UniProtKB/Swiss-Prot
	Q9D0D9	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)