Nt5c3 (5'-nucleotidase, cytosolic III) - Rat Genome Database
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Gene: Nt5c3 (5'-nucleotidase, cytosolic III) Mus musculus
Analyze
Symbol: Nt5c3
Name: 5'-nucleotidase, cytosolic III
RGD ID: 1323775
MGI Page MGI
Description: Predicted to have 5'-nucleotidase activity. Predicted to be involved in adenosine metabolic process and defense response to virus. Localizes to mitochondrion. Is expressed in several structures, including alimentary system; hemolymphoid system; liver; nervous system; and respiratory system. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA); PARTICIPATES IN monoterpenoid biosynthetic pathway; niacin metabolic pathway; purine metabolic pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1600024P05Rik; 2610206B05Rik; 3110004A18Rik; 5'-nucleotidase, pyrimidine; 7-methylguanosine nucleotidase; 7-methylguanosine phosphate-specific 5'-nucleotidase; AI842776; cN-III; cytosolic 5'-nucleotidase 3; cytosolic 5'-nucleotidase 3A; cytosolic 5'-nucleotidase III; lupin; Nt5c3a; Nt5y; p36; P5'N-1; P5N-1; PN-1; PN-I; PSN1; pyrimidine 5'-nucleotidase 1; UMPH; Umph-1; Umph1; uridine monophosphatase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39656,859,385 - 56,900,993 (-)NCBIGRCm39mm39
GRCm38656,882,400 - 56,924,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl656,882,400 - 56,923,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv37656,832,394 - 56,873,926 (-)NCBIGRCm37mm9NCBIm37
MGSCv36656,811,983 - 56,853,407 (-)NCBImm8
Celera657,644,243 - 57,685,811 (-)NCBICelera
Cytogenetic Map6B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:6301357   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11180800   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18614015   PMID:21267068   PMID:21873635   PMID:22925580   PMID:23992312   PMID:23992316   PMID:32325033  


Genomics

Comparative Map Data
Nt5c3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39656,859,385 - 56,900,993 (-)NCBIGRCm39mm39
GRCm38656,882,400 - 56,924,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl656,882,400 - 56,923,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv37656,832,394 - 56,873,926 (-)NCBIGRCm37mm9NCBIm37
MGSCv36656,811,983 - 56,853,407 (-)NCBImm8
Celera657,644,243 - 57,685,811 (-)NCBICelera
Cytogenetic Map6B3NCBI
NT5C3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl733,014,114 - 33,062,797 (-)EnsemblGRCh38hg38GRCh38
GRCh38733,014,113 - 33,062,776 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37733,053,725 - 33,102,409 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37733,053,725 - 33,102,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36733,020,267 - 33,068,934 (-)NCBINCBI36hg18NCBI36
Build 34732,826,996 - 32,853,758NCBI
Celera733,035,567 - 33,084,229 (-)NCBI
Cytogenetic Map7p14.3NCBI
HuRef732,932,970 - 32,981,660 (-)NCBIHuRef
CHM1_1733,053,595 - 33,102,290 (-)NCBICHM1_1
CRA_TCAGchr7v2733,098,270 - 33,146,958 (-)NCBI
Nt5c3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2486,161,642 - 86,204,671 (-)NCBI
Rnor_6.0 Ensembl487,237,949 - 87,281,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0487,238,325 - 87,281,234 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04151,889,315 - 151,932,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4485,870,878 - 85,913,812 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1486,114,353 - 86,157,335 (-)NCBI
Celera480,991,357 - 81,034,409 (-)NCBICelera
Cytogenetic Map4q24NCBI
Nt5c3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955617239,631 - 293,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955617240,132 - 293,278 (-)NCBIChiLan1.0ChiLan1.0
NT5C3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1734,009,467 - 34,057,740 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl734,009,467 - 34,057,740 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0733,608,746 - 33,657,380 (-)NCBIMhudiblu_PPA_v0panPan3
NT5C3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1445,077,099 - 45,131,905 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11445,076,487 - 45,132,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nt5c3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364788,785,984 - 8,834,776 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5C3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1840,441,102 - 40,483,376 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11840,440,890 - 40,483,043 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21844,383,395 - 44,425,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NT5C3A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12125,362,142 - 25,409,483 (+)NCBI
ChlSab1.1 Ensembl2125,362,118 - 25,411,935 (+)Ensembl
Nt5c3a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248962,881,217 - 2,935,514 (+)NCBI

Position Markers
BB491051  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38656,882,561 - 56,882,672UniSTSGRCm38
MGSCv37656,832,555 - 56,832,666UniSTSGRCm37
Celera657,644,404 - 57,644,515UniSTS
Cytogenetic Map6B3UniSTS
Whitehead/MRC_RH6563.92UniSTS
AW556929  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38656,882,653 - 56,882,791UniSTSGRCm38
MGSCv37656,832,647 - 56,832,785UniSTSGRCm37
Celera657,644,496 - 57,644,634UniSTS
Cytogenetic Map6B3UniSTS
Whitehead/MRC_RH6566.96UniSTS
AI842776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38656,882,561 - 56,882,680UniSTSGRCm38
MGSCv37656,832,555 - 56,832,674UniSTSGRCm37
Celera657,644,404 - 57,644,523UniSTS
Cytogenetic Map6B3UniSTS
Whitehead/MRC_RH6563.92UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3172656565726677Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63270000066700000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:971
Count of miRNA genes:513
Interacting mature miRNAs:604
Transcripts:ENSMUST00000031793, ENSMUST00000101367, ENSMUST00000126137, ENSMUST00000127725, ENSMUST00000134577, ENSMUST00000135558, ENSMUST00000138647, ENSMUST00000152447
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX527194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY080680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY261587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB571852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX734167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031793   ⟹   ENSMUSP00000031793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,882,400 - 56,923,932 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101367   ⟹   ENSMUSP00000098918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,882,400 - 56,901,886 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,886,665 - 56,889,863 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,895,794 - 56,901,883 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134577
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,892,801 - 56,923,857 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135558   ⟹   ENSMUSP00000145230
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,882,984 - 56,923,876 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,891,539 - 56,923,890 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152447   ⟹   ENSMUSP00000138606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,882,951 - 56,923,819 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205087   ⟹   ENSMUSP00000145410
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl656,884,791 - 56,923,724 (-)Ensembl
RefSeq Acc Id: NM_001252374   ⟹   NP_001239303
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,878,871 (-)NCBI
GRCm38656,882,400 - 56,901,886 (-)NCBI
Celera657,644,243 - 57,685,811 (-)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360963   ⟹   NP_001347892
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,917 (-)NCBI
GRCm38656,882,400 - 56,923,932 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026004   ⟹   NP_080280
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,917 (-)NCBI
GRCm38656,882,400 - 56,923,932 (-)ENTREZGENE
MGSCv37656,832,394 - 56,873,926 (-)RGD
Celera657,644,243 - 57,685,811 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505273   ⟹   XP_006505336
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,892 (-)NCBI
GRCm38656,882,400 - 56,923,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505274   ⟹   XP_006505337
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,896 (-)NCBI
GRCm38656,882,400 - 56,923,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505275   ⟹   XP_006505338
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,899 (-)NCBI
GRCm38656,882,400 - 56,923,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505276   ⟹   XP_006505339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,878,922 (-)NCBI
GRCm38656,882,400 - 56,901,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241111   ⟹   XP_011239413
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39656,859,385 - 56,900,993 (-)NCBI
GRCm38656,882,400 - 56,924,008 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080280   ⟸   NM_026004
- Peptide Label: isoform 1
- UniProtKB: Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239303   ⟸   NM_001252374
- Peptide Label: isoform 2
- UniProtKB: Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505338   ⟸   XM_006505275
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505337   ⟸   XM_006505274
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505336   ⟸   XM_006505273
- Peptide Label: isoform X1
- UniProtKB: Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505339   ⟸   XM_006505276
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011239413   ⟸   XM_011241111
- Peptide Label: isoform X1
- UniProtKB: Q9D020 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001347892   ⟸   NM_001360963
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000031793   ⟸   ENSMUST00000031793
RefSeq Acc Id: ENSMUSP00000138606   ⟸   ENSMUST00000152447
RefSeq Acc Id: ENSMUSP00000145410   ⟸   ENSMUST00000205087
RefSeq Acc Id: ENSMUSP00000098918   ⟸   ENSMUST00000101367
RefSeq Acc Id: ENSMUSP00000145230   ⟸   ENSMUST00000135558

Promoters
RGD ID:6839707
Promoter ID:MM_KWN:46131
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:OTTMUST00000056307
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36656,839,799 - 56,840,299 (-)MPROMDB
RGD ID:6839706
Promoter ID:MM_KWN:46132
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000116607
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36656,847,306 - 56,848,242 (-)MPROMDB
RGD ID:6839705
Promoter ID:MM_KWN:46133
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   Spleen
Transcripts:ENSMUST00000101367,   OTTMUST00000056167
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36656,851,711 - 56,852,211 (-)MPROMDB
RGD ID:6840151
Promoter ID:MM_KWN:46135
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000056164,   OTTMUST00000056165,   OTTMUST00000056304,   OTTMUST00000056305,   OTTMUST00000056306,   UC009CBS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36656,873,701 - 56,874,407 (+)MPROMDB
RGD ID:6889830
Promoter ID:EPDNEW_M8366
Type:initiation region
Name:Nt5c3_1
Description:Mus musculus 5'-nucleotidase, cytosolic III , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8367  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38656,901,876 - 56,901,936EPDNEW
RGD ID:6889832
Promoter ID:EPDNEW_M8367
Type:initiation region
Name:Nt5c3_2
Description:Mus musculus 5'-nucleotidase, cytosolic III , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8366  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38656,923,857 - 56,923,917EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927186 AgrOrtholog
Ensembl Genes ENSMUSG00000029780 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031793 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098918 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138606 UniProtKB/TrEMBL
  ENSMUSP00000145230 UniProtKB/TrEMBL
  ENSMUSP00000145410 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031793 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101367 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000135558 UniProtKB/TrEMBL
  ENSMUST00000152447 UniProtKB/TrEMBL
  ENSMUST00000205087 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/Swiss-Prot
InterPro HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot
  Pyrimidine_nucleotidase_eu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:107569 UniProtKB/Swiss-Prot
MGD MGI:1927186 ENTREZGENE
NCBI Gene 107569 ENTREZGENE
Pfam UMPH-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nt5c3 PhenoGen
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs HAD-SF-IE UniProtKB/Swiss-Prot
UniProt 5NT3A_MOUSE UniProtKB/Swiss-Prot
  A0A0N4SVS9_MOUSE UniProtKB/TrEMBL
  A0A0N4SW80_MOUSE UniProtKB/TrEMBL
  Q9D020 ENTREZGENE
  S4R2D9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CI05 UniProtKB/Swiss-Prot
  Q9D0D9 UniProtKB/Swiss-Prot