Asph (aspartate-beta-hydroxylase) - Rat Genome Database
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Gene: Asph (aspartate-beta-hydroxylase) Mus musculus
Analyze
Symbol: Asph
Name: aspartate-beta-hydroxylase
RGD ID: 1323752
MGI Page MGI
Description: Predicted to have calcium ion binding activity and peptide-aspartate beta-dioxygenase activity. Involved in several processes, including face morphogenesis; peptidyl-aspartic acid hydroxylation; and regulation of protein stability. Localizes to cytoplasm. Is expressed in several structures, including eye; face; heart; limb; and trunk. Human ortholog(s) of this gene implicated in cholangiocarcinoma. Orthologous to human ASPH (aspartate beta-hydroxylase); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310005F16Rik; 3110001L23Rik; AI848629; ASP beta-hydroxylase; aspartate beta-hydroxylase; aspartly beta-hydroxylase; aspartyl beta-hydroxylase; aspartyl beta-hydroxylase Humbug; aspartyl/asparaginyl beta-hydroxylase; AW261690; AW561901; BA; BAH; C79816; calsequestrin-binding protein; cI-3; cI-37; jumbug; Junc; juncta; junctate; junctin; peptide-aspartate beta-dioxygenase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3949,449,085 - 9,669,344 (-)NCBIGRCm39mm39
GRCm3849,449,085 - 9,669,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl49,448,069 - 9,669,344 (-)EnsemblGRCm38mm10GRCm38
MGSCv3749,376,232 - 9,596,309 (-)NCBIGRCm37mm9NCBIm37
MGSCv3649,376,232 - 9,596,231 (-)NCBImm8
Celera49,289,732 - 9,501,866 (-)NCBICelera
Cytogenetic Map4A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
choline  (EXP)
chromium atom  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
fonofos  (ISO)
formaldehyde  (ISO)
genistein  (EXP)
hydralazine  (ISO)
indometacin  (ISO)
isoflavones  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
nicotinic acid  (EXP)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
Soman  (ISO)
succimer  (EXP,ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thapsigargin  (EXP)
titanium dioxide  (EXP)
tremolite asbestos  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8530521   PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:10956665   PMID:11004510   PMID:11042159   PMID:11076861   PMID:11356033   PMID:11735129   PMID:11773073  
PMID:12154005   PMID:12477932   PMID:12520002   PMID:12904583   PMID:15747579   PMID:15777620   PMID:16104381   PMID:16141072   PMID:16141073   PMID:16153633   PMID:16289269   PMID:16602821  
PMID:17224479   PMID:17500595   PMID:17516551   PMID:17706594   PMID:17890426   PMID:18353357   PMID:18620751   PMID:19075228   PMID:19286959   PMID:19386262   PMID:19663697   PMID:19896466  
PMID:21267068   PMID:21406540   PMID:21873635   PMID:22005675   PMID:22025663   PMID:22123818   PMID:22298808   PMID:22411973   PMID:22768324   PMID:23341629   PMID:24768550   PMID:26039991  
PMID:27113764   PMID:27434733   PMID:28378742   PMID:29530978   PMID:30995482   PMID:31138677   PMID:32325033  


Genomics

Comparative Map Data
Asph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3949,449,085 - 9,669,344 (-)NCBIGRCm39mm39
GRCm3849,449,085 - 9,669,344 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl49,448,069 - 9,669,344 (-)EnsemblGRCm38mm10GRCm38
MGSCv3749,376,232 - 9,596,309 (-)NCBIGRCm37mm9NCBIm37
MGSCv3649,376,232 - 9,596,231 (-)NCBImm8
Celera49,289,732 - 9,501,866 (-)NCBICelera
Cytogenetic Map4A1NCBI
ASPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl861,500,556 - 61,714,640 (-)EnsemblGRCh38hg38GRCh38
GRCh38861,500,556 - 61,714,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37862,413,115 - 62,627,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36862,578,374 - 62,789,560 (-)NCBINCBI36hg18NCBI36
Build 34862,699,648 - 62,764,919NCBI
Celera858,402,958 - 58,617,392 (-)NCBI
Cytogenetic Map8q12.3NCBI
HuRef857,901,587 - 58,116,117 (-)NCBIHuRef
CHM1_1862,465,102 - 62,679,146 (-)NCBICHM1_1
Asph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0522,577,680 - 22,799,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl522,577,675 - 22,799,349 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0527,312,094 - 27,529,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4523,495,780 - 23,520,672 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1523,337,888 - 23,733,050 (-)NCBI
Celera521,856,777 - 22,069,140 (-)NCBICelera
Cytogenetic Map5q13NCBI
Asph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544417,121,559 - 17,318,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544417,116,060 - 17,320,966 (+)NCBIChiLan1.0ChiLan1.0
ASPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1859,629,707 - 59,843,921 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl859,629,707 - 59,843,658 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0857,921,580 - 58,134,778 (-)NCBIMhudiblu_PPA_v0panPan3
ASPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2911,814,554 - 12,022,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12911,812,275 - 12,022,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Asph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649611,604,992 - 11,815,680 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl471,903,359 - 72,107,046 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1471,902,891 - 72,107,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2478,382,152 - 78,505,768 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASPH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1857,378,019 - 57,599,812 (-)NCBI
ChlSab1.1 Ensembl857,375,894 - 57,565,259 (-)Ensembl
Asph
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474430,190,625 - 30,420,501 (+)NCBI

Position Markers
Asph  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS
cM Map4 UniSTS
RH126745  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,633,167 - 9,633,393UniSTSGRCm38
MGSCv3749,560,314 - 9,560,540UniSTSGRCm37
Celera49,465,833 - 9,466,059UniSTS
Cytogenetic Map4A1UniSTS
Whitehead/MRC_RH484.42UniSTS
AW261690  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,575,650 - 9,575,746UniSTSGRCm38
MGSCv3749,502,797 - 9,502,893UniSTSGRCm37
Celera49,415,642 - 9,415,738UniSTS
Cytogenetic Map4A1UniSTS
Whitehead/MRC_RH484.32UniSTS
D4Mit181  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,573,923 - 9,574,055UniSTSGRCm38
MGSCv3749,501,070 - 9,501,202UniSTSGRCm37
Celera49,413,897 - 9,414,037UniSTS
Cytogenetic Map4A1UniSTS
cM Map42.5UniSTS
Whitehead Genetic44.4UniSTS
Whitehead/MRC_RH484.42UniSTS
Whitehead_YAC4 UniSTS
D4Mit263  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,569,846 - 9,569,955UniSTSGRCm38
MGSCv3749,496,993 - 9,497,102UniSTSGRCm37
Celera49,409,803 - 9,409,912UniSTS
Cytogenetic Map4A1UniSTS
cM Map43.2UniSTS
Whitehead Genetic45.5UniSTS
Whitehead_YAC4 UniSTS
RH125437  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,479,060 - 9,479,236UniSTSGRCm38
MGSCv3749,406,207 - 9,406,383UniSTSGRCm37
Celera49,319,660 - 9,319,836UniSTS
Cytogenetic Map4A1UniSTS
Trdn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS
Cytogenetic Map10A4UniSTS
cM Map10 UniSTS
UniSTS:234865  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,451,397 - 9,451,610UniSTSGRCm38
MGSCv3749,378,544 - 9,378,757UniSTSGRCm37
Celera49,292,047 - 9,292,261UniSTS
Cytogenetic Map4A1UniSTS
AI848629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3849,629,178 - 9,629,293UniSTSGRCm38
MGSCv3749,556,325 - 9,556,440UniSTSGRCm37
Celera49,461,842 - 9,461,957UniSTS
Cytogenetic Map4A1UniSTS
Whitehead/MRC_RH496.15UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Asph  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS
cM Map4 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
1301994Ksc2_mkeratinocyte stem cell locus 2 (mouse)Not determined493955259574055Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7446
Count of miRNA genes:974
Interacting mature miRNAs:1383
Transcripts:ENSMUST00000038564, ENSMUST00000078139, ENSMUST00000084912, ENSMUST00000084915, ENSMUST00000098275, ENSMUST00000103004, ENSMUST00000108333, ENSMUST00000108334, ENSMUST00000108335, ENSMUST00000108337, ENSMUST00000108339, ENSMUST00000108340, ENSMUST00000124408, ENSMUST00000130617, ENSMUST00000131605, ENSMUST00000137375, ENSMUST00000146441, ENSMUST00000151232, ENSMUST00000152058, ENSMUST00000152526
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF221854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF223413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF223414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF302653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF302654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF302655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL773548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC152365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP767098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY268464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY269793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038564   ⟹   ENSMUSP00000049018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,621,696 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000078139   ⟹   ENSMUSP00000077273
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,449,079 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000084912   ⟹   ENSMUSP00000081975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,610,843 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000084915   ⟹   ENSMUSP00000081978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,575,267 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098275   ⟹   ENSMUSP00000095876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,630,547 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000103004   ⟹   ENSMUSP00000100069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,620,909 - 9,643,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108333   ⟹   ENSMUSP00000103970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,575,267 - 9,643,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108334   ⟹   ENSMUSP00000103971
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,575,267 - 9,643,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108335   ⟹   ENSMUSP00000103972
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,575,267 - 9,643,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108337   ⟹   ENSMUSP00000103974
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,575,267 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108339   ⟹   ENSMUSP00000103976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,449,079 - 9,669,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108340   ⟹   ENSMUSP00000103977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,449,079 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124408
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,574,872 - 9,595,689 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130617
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,668,313 - 9,669,086 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131605   ⟹   ENSMUSP00000118518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,630,926 - 9,669,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137375
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,633,116 - 9,643,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146441   ⟹   ENSMUSP00000116899
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,629,023 - 9,669,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151232
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,448,069 - 9,475,458 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,604,516 - 9,639,260 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152526   ⟹   ENSMUSP00000116874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl49,607,797 - 9,643,717 (-)Ensembl
RefSeq Acc Id: NM_001177849   ⟹   NP_001171320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,449,085 - 9,669,162 (-)NCBI
GRCm3849,449,085 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177850   ⟹   NP_001171321
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,262 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177851   ⟹   NP_001171322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,262 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177852   ⟹   NP_001171323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,717 (-)NCBI
GRCm3849,575,262 - 9,643,717 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177853   ⟹   NP_001171324
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,717 (-)NCBI
GRCm3849,575,262 - 9,643,717 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177854   ⟹   NP_001171325
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,717 (-)NCBI
GRCm3849,575,262 - 9,643,717 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177855   ⟹   NP_001171326
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,620,910 - 9,669,162 (-)NCBI
GRCm3849,620,910 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177856   ⟹   NP_001171327
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,628,645 - 9,669,162 (-)NCBI
GRCm3849,628,645 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290367   ⟹   NP_001277296
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,449,085 - 9,669,344 (-)NCBI
GRCm3849,449,085 - 9,669,344 (-)NCBI
Celera49,289,732 - 9,502,048 (-)NCBI
Sequence:
RefSeq Acc Id: NM_023066   ⟹   NP_075553
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,449,085 - 9,669,162 (-)NCBI
GRCm3849,449,085 - 9,669,162 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133723   ⟹   NP_598484
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,620,910 - 9,643,717 (-)NCBI
GRCm3849,620,910 - 9,643,717 (-)NCBI
MGSCv3749,376,232 - 9,596,309 (-)RGD
Celera49,289,732 - 9,502,048 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538159   ⟹   XP_006538222
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,613,319 - 9,644,002 (-)NCBI
GRCm3849,620,899 - 9,645,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320340   ⟹   XP_017175829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,262 - 9,669,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320341   ⟹   XP_017175830
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,262 - 9,669,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320342   ⟹   XP_017175831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,262 - 9,669,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320343   ⟹   XP_017175832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,861 (-)NCBI
GRCm3849,575,262 - 9,643,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320344   ⟹   XP_017175833
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
GRCm3849,575,266 - 9,669,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320345   ⟹   XP_017175834
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,628,645 - 9,643,953 (-)NCBI
GRCm3849,628,645 - 9,644,003 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164296   ⟹   XP_036020189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
RefSeq Acc Id: XM_036164297   ⟹   XP_036020190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
RefSeq Acc Id: XM_036164298   ⟹   XP_036020191
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
RefSeq Acc Id: XM_036164299   ⟹   XP_036020192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,162 (-)NCBI
RefSeq Acc Id: XM_036164300   ⟹   XP_036020193
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,886 (-)NCBI
RefSeq Acc Id: XM_036164301   ⟹   XP_036020194
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,643,872 (-)NCBI
RefSeq Acc Id: XM_036164302   ⟹   XP_036020195
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,330 (-)NCBI
RefSeq Acc Id: XM_036164303   ⟹   XP_036020196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3949,575,262 - 9,669,330 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001171320 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171321 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171322 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171323 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171324 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171325 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171326 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171327 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277296 (Get FASTA)   NCBI Sequence Viewer  
  NP_075553 (Get FASTA)   NCBI Sequence Viewer  
  NP_598484 (Get FASTA)   NCBI Sequence Viewer  
  XP_006538222 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175829 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175830 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175831 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175832 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175833 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175834 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020189 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020190 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020191 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020192 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020193 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020194 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020195 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020196 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG39913 (Get FASTA)   NCBI Sequence Viewer  
  AAG39914 (Get FASTA)   NCBI Sequence Viewer  
  AAG40803 (Get FASTA)   NCBI Sequence Viewer  
  AAG40804 (Get FASTA)   NCBI Sequence Viewer  
  AAG40805 (Get FASTA)   NCBI Sequence Viewer  
  AAG40808 (Get FASTA)   NCBI Sequence Viewer  
  AAG40809 (Get FASTA)   NCBI Sequence Viewer  
  AAG40810 (Get FASTA)   NCBI Sequence Viewer  
  AAG40812 (Get FASTA)   NCBI Sequence Viewer  
  AAG40813 (Get FASTA)   NCBI Sequence Viewer  
  AAG40814 (Get FASTA)   NCBI Sequence Viewer  
  AAH15281 (Get FASTA)   NCBI Sequence Viewer  
  AAH61098 (Get FASTA)   NCBI Sequence Viewer  
  AAI28300 (Get FASTA)   NCBI Sequence Viewer  
  AAI52366 (Get FASTA)   NCBI Sequence Viewer  
  AAK00614 (Get FASTA)   NCBI Sequence Viewer  
  AAL09319 (Get FASTA)   NCBI Sequence Viewer  
  AAL09320 (Get FASTA)   NCBI Sequence Viewer  
  AAL09321 (Get FASTA)   NCBI Sequence Viewer  
  AAN87549 (Get FASTA)   NCBI Sequence Viewer  
  AAN87550 (Get FASTA)   NCBI Sequence Viewer  
  BAB26119 (Get FASTA)   NCBI Sequence Viewer  
  BAB26575 (Get FASTA)   NCBI Sequence Viewer  
  BAB29499 (Get FASTA)   NCBI Sequence Viewer  
  BAB30750 (Get FASTA)   NCBI Sequence Viewer  
  BAC26882 (Get FASTA)   NCBI Sequence Viewer  
  BAC27083 (Get FASTA)   NCBI Sequence Viewer  
  BAC29171 (Get FASTA)   NCBI Sequence Viewer  
  BAC33783 (Get FASTA)   NCBI Sequence Viewer  
  BAE30688 (Get FASTA)   NCBI Sequence Viewer  
  BAE36131 (Get FASTA)   NCBI Sequence Viewer  
  BAE38110 (Get FASTA)   NCBI Sequence Viewer  
  EDL05667 (Get FASTA)   NCBI Sequence Viewer  
  EDL05668 (Get FASTA)   NCBI Sequence Viewer  
  EDL05669 (Get FASTA)   NCBI Sequence Viewer  
  EDL05670 (Get FASTA)   NCBI Sequence Viewer  
  EDL05671 (Get FASTA)   NCBI Sequence Viewer  
  EDL05672 (Get FASTA)   NCBI Sequence Viewer  
  EDL05673 (Get FASTA)   NCBI Sequence Viewer  
  Q8BSY0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_075553   ⟸   NM_023066
- Peptide Label: isoform 1
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_598484   ⟸   NM_133723
- Peptide Label: isoform 2
- UniProtKB: Q9CR06 (UniProtKB/TrEMBL),   Q9D7J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171320   ⟸   NM_001177849
- Peptide Label: isoform 3
- UniProtKB: A2AL85 (UniProtKB/TrEMBL),   Q8BQK0 (UniProtKB/TrEMBL),   Q8CBM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171321   ⟸   NM_001177850
- Peptide Label: isoform 4
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   A2AL81 (UniProtKB/TrEMBL),   Q3TU40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171322   ⟸   NM_001177851
- Peptide Label: isoform 5
- UniProtKB: Q3TU40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171323   ⟸   NM_001177852
- Peptide Label: isoform 6
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   A2AL75 (UniProtKB/TrEMBL),   Q3TU40 (UniProtKB/TrEMBL),   Q9CR06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171324   ⟸   NM_001177853
- Peptide Label: isoform 7
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   A2AL76 (UniProtKB/TrEMBL),   Q3TU40 (UniProtKB/TrEMBL),   Q9CR06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171325   ⟸   NM_001177854
- Peptide Label: isoform 9
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   A2AL74 (UniProtKB/TrEMBL),   Q3TU40 (UniProtKB/TrEMBL),   Q9CR06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171326   ⟸   NM_001177855
- Peptide Label: isoform 8
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   A2AL78 (UniProtKB/TrEMBL),   Q9CR06 (UniProtKB/TrEMBL),   Q9D7J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171327   ⟸   NM_001177856
- Peptide Label: isoform 10
- UniProtKB: Q6P8S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538222   ⟸   XM_006538159
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: NP_001277296   ⟸   NM_001290367
- Peptide Label: isoform 11 precursor
- UniProtKB: Q8BSY0 (UniProtKB/Swiss-Prot),   Q8CBM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175833   ⟸   XM_017320344
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017175831   ⟸   XM_017320342
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017175830   ⟸   XM_017320341
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017175829   ⟸   XM_017320340
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017175832   ⟸   XM_017320343
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017175834   ⟸   XM_017320345
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: ENSMUSP00000081978   ⟸   ENSMUST00000084915
RefSeq Acc Id: ENSMUSP00000081975   ⟸   ENSMUST00000084912
RefSeq Acc Id: ENSMUSP00000103970   ⟸   ENSMUST00000108333
RefSeq Acc Id: ENSMUSP00000103972   ⟸   ENSMUST00000108335
RefSeq Acc Id: ENSMUSP00000103971   ⟸   ENSMUST00000108334
RefSeq Acc Id: ENSMUSP00000103974   ⟸   ENSMUST00000108337
RefSeq Acc Id: ENSMUSP00000103976   ⟸   ENSMUST00000108339
RefSeq Acc Id: ENSMUSP00000103977   ⟸   ENSMUST00000108340
RefSeq Acc Id: ENSMUSP00000116874   ⟸   ENSMUST00000152526
RefSeq Acc Id: ENSMUSP00000116899   ⟸   ENSMUST00000146441
RefSeq Acc Id: ENSMUSP00000118518   ⟸   ENSMUST00000131605
RefSeq Acc Id: ENSMUSP00000095876   ⟸   ENSMUST00000098275
RefSeq Acc Id: ENSMUSP00000077273   ⟸   ENSMUST00000078139
RefSeq Acc Id: ENSMUSP00000100069   ⟸   ENSMUST00000103004
RefSeq Acc Id: ENSMUSP00000049018   ⟸   ENSMUST00000038564
RefSeq Acc Id: XP_036020196   ⟸   XM_036164303
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036020195   ⟸   XM_036164302
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036020190   ⟸   XM_036164297
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036020192   ⟸   XM_036164299
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036020191   ⟸   XM_036164298
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036020189   ⟸   XM_036164296
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036020193   ⟸   XM_036164300
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036020194   ⟸   XM_036164301
- Peptide Label: isoform X6
Protein Domains
Asp-B-Hydro_N   TPR_REGION

Promoters
RGD ID:6834913
Promoter ID:MM_KWN:36631
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000010185
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3649,566,981 - 9,567,481 (-)MPROMDB
RGD ID:6834911
Promoter ID:MM_KWN:36632
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:ENSMUST00000029858,   ENSMUST00000029859,   ENSMUST00000098276,   ENSMUST00000108333,   ENSMUST00000108334,   ENSMUST00000108335,   OTTMUST00000010175,   OTTMUST00000010177,   OTTMUST00000010178,   UC008RYJ.1,   UC008RYK.1,   UC008RYL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3649,570,631 - 9,571,131 (-)MPROMDB
RGD ID:6834910
Promoter ID:MM_KWN:36633
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000029860,   ENSMUST00000076014,   ENSMUST00000084915,   ENSMUST00000098275,   ENSMUST00000108339,   OTTMUST00000010073,   OTTMUST00000010168,   OTTMUST00000010170,   OTTMUST00000010181,   OTTMUST00000010182,   OTTMUST00000010183,   UC008RYI.1,   UC008RYN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3649,596,131 - 9,596,682 (-)MPROMDB
RGD ID:6882784
Promoter ID:EPDNEW_M4843
Type:initiation region
Name:Asph_2
Description:Mus musculus aspartate-beta-hydroxylase , transcript variant11, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4844  EPDNEW_M4845  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3849,643,663 - 9,643,723EPDNEW
RGD ID:6882786
Promoter ID:EPDNEW_M4844
Type:single initiation site
Name:Asph_3
Description:Mus musculus aspartate-beta-hydroxylase , transcript variant11, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4843  EPDNEW_M4845  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3849,651,335 - 9,651,395EPDNEW
RGD ID:6882788
Promoter ID:EPDNEW_M4845
Type:initiation region
Name:Asph_1
Description:Mus musculus aspartate-beta-hydroxylase , transcript variant11, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4843  EPDNEW_M4844  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3849,669,085 - 9,669,145EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914186 AgrOrtholog
Ensembl Genes ENSMUSG00000028207 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000049018 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000077273 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000081975 UniProtKB/TrEMBL
  ENSMUSP00000081978 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000095876 UniProtKB/TrEMBL
  ENSMUSP00000100069 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103970 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103971 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103972 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103974 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103976 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000103977 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000116874 UniProtKB/TrEMBL
  ENSMUSP00000116899 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000118518 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038564 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000078139 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000084912 UniProtKB/TrEMBL
  ENSMUST00000084915 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000098275 UniProtKB/TrEMBL
  ENSMUST00000103004 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108333 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108334 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108335 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108337 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108339 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108340 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000131605 UniProtKB/TrEMBL
  ENSMUST00000146441 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000152526 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Asp-B-hydro/Triadin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asp/Arg/Pro-Hydrxlase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASPH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPNS-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:65973 UniProtKB/Swiss-Prot
MGD MGI:1914186 ENTREZGENE
NCBI Gene 65973 ENTREZGENE
PANTHER PTHR12366 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Asp-B-Hydro_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asp_Arg_Hydrox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Asph PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.222206 ENTREZGENE
  Mm.412008 ENTREZGENE
UniProt A2AL71_MOUSE UniProtKB/TrEMBL
  A2AL74 ENTREZGENE, UniProtKB/TrEMBL
  A2AL75 ENTREZGENE, UniProtKB/TrEMBL
  A2AL76 ENTREZGENE, UniProtKB/TrEMBL
  A2AL77_MOUSE UniProtKB/TrEMBL
  A2AL78 ENTREZGENE, UniProtKB/TrEMBL
  A2AL79_MOUSE UniProtKB/TrEMBL
  A2AL81 ENTREZGENE, UniProtKB/TrEMBL
  A2AL83_MOUSE UniProtKB/TrEMBL
  A2AL85 ENTREZGENE, UniProtKB/TrEMBL
  ASPH_MOUSE UniProtKB/Swiss-Prot
  Q3TU40 ENTREZGENE, UniProtKB/TrEMBL
  Q6P8S1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQK0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSY0 ENTREZGENE
  Q8CBM2 ENTREZGENE, UniProtKB/TrEMBL
  Q8CH79_MOUSE UniProtKB/TrEMBL
  Q91WG6_MOUSE UniProtKB/TrEMBL
  Q920F7_MOUSE UniProtKB/TrEMBL
  Q920F8_MOUSE UniProtKB/TrEMBL
  Q920F9_MOUSE UniProtKB/TrEMBL
  Q9CR06 ENTREZGENE, UniProtKB/TrEMBL
  Q9D7J8 ENTREZGENE, UniProtKB/TrEMBL
  Q9EQ62_MOUSE UniProtKB/TrEMBL
  Q9EQ63_MOUSE UniProtKB/TrEMBL
  Q9EQ65_MOUSE UniProtKB/TrEMBL
  Q9EQ66_MOUSE UniProtKB/TrEMBL
  Q9EQ67_MOUSE UniProtKB/TrEMBL
  Q9EQ69_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9EPA6 UniProtKB/Swiss-Prot
  Q9EQ64 UniProtKB/Swiss-Prot