Siglec1 (sialic acid binding Ig-like lectin 1, sialoadhesin) - Rat Genome Database

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Gene: Siglec1 (sialic acid binding Ig-like lectin 1, sialoadhesin) Mus musculus
Analyze
Symbol: Siglec1
Name: sialic acid binding Ig-like lectin 1, sialoadhesin
RGD ID: 1323675
MGI Page MGI
Description: Predicted to have virion binding activity. Involved in positive regulation of T cell apoptotic process and positive regulation of extrinsic apoptotic signaling pathway. Predicted to localize to early endosome; late endosome; and plasma membrane. Is expressed in spleen. Orthologous to human SIGLEC1 (sialic acid binding Ig like lectin 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Cd169; SER; sheep erythrocyte receptor; sialic acid-binding Ig-like lectin 1; sialoadhesin; Sigle; Siglec-1; Sn
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,911,140 - 130,928,697 (-)NCBIGRCm39mm39
GRCm39 Ensembl2130,911,140 - 130,928,685 (-)Ensembl
GRCm382131,067,801 - 131,086,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,069,220 - 131,086,765 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,894,956 - 130,912,501 (-)NCBIGRCm37mm9NCBIm37
MGSCv362130,760,184 - 130,778,206 (-)NCBImm8
Celera2132,293,968 - 132,311,385 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:2050106   PMID:7533044   PMID:7925291   PMID:8530048   PMID:9383289   PMID:9660955   PMID:10086356   PMID:10393093   PMID:11133773   PMID:11238599   PMID:12477932   PMID:15364954  
PMID:15449545   PMID:15488769   PMID:16449664   PMID:16458537   PMID:16716409   PMID:16732727   PMID:16887986   PMID:17064921   PMID:17657313   PMID:18414664   PMID:18641281   PMID:19406152  
PMID:19414805   PMID:20154220   PMID:21194983   PMID:21267068   PMID:21282381   PMID:21705651   PMID:21873635   PMID:21875957   PMID:22355111   PMID:22675532   PMID:22851711   PMID:22999953  
PMID:23408841   PMID:23502962   PMID:23520536   PMID:23601688   PMID:23610394   PMID:23740482   PMID:23986532   PMID:24194600   PMID:24255917   PMID:24286366   PMID:24591636   PMID:24684244  
PMID:24721610   PMID:24788876   PMID:24983317   PMID:25266072   PMID:25487358   PMID:25657250   PMID:25658939   PMID:25790477   PMID:25826454   PMID:25838430   PMID:26070485   PMID:26193821  
PMID:26358190   PMID:26370074   PMID:26429886   PMID:26453377   PMID:26647968   PMID:26719275   PMID:26775238   PMID:27129263   PMID:27477286   PMID:27487469   PMID:27596364   PMID:27792766  
PMID:27809306   PMID:27860408   PMID:27871915   PMID:27993350   PMID:28277099   PMID:28359758   PMID:28466432   PMID:28694804   PMID:29191879   PMID:29202448   PMID:29249358   PMID:29425504  
PMID:29907708   PMID:30282719   PMID:30355615   PMID:30393066   PMID:30409884   PMID:30413362   PMID:30595553   PMID:30674470   PMID:30811982   PMID:30930901   PMID:31039135   PMID:31114569  
PMID:31201093   PMID:31469835   PMID:31865052   PMID:31872800   PMID:32259484   PMID:32424104   PMID:32515732  


Genomics

Comparative Map Data
Siglec1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,911,140 - 130,928,697 (-)NCBIGRCm39mm39
GRCm39 Ensembl2130,911,140 - 130,928,685 (-)Ensembl
GRCm382131,067,801 - 131,086,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,069,220 - 131,086,765 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,894,956 - 130,912,501 (-)NCBIGRCm37mm9NCBIm37
MGSCv362130,760,184 - 130,778,206 (-)NCBImm8
Celera2132,293,968 - 132,311,385 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.26NCBI
SIGLEC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl203,686,970 - 3,712,600 (-)EnsemblGRCh38hg38GRCh38
GRCh38203,686,970 - 3,712,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37203,667,617 - 3,693,247 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,615,617 - 3,635,775 (-)NCBINCBI36hg18NCBI36
Build 34203,617,206 - 3,635,775NCBI
Celera203,729,495 - 3,749,653 (-)NCBI
Cytogenetic Map20p13NCBI
HuRef203,615,947 - 3,636,103 (-)NCBIHuRef
CHM1_1203,667,931 - 3,688,082 (-)NCBICHM1_1
Siglec1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23118,287,988 - 118,307,125 (-)NCBI
Rnor_6.0 Ensembl3123,612,067 - 123,631,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03123,612,067 - 123,631,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03130,111,340 - 130,130,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,769,404 - 118,787,908 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13118,676,987 - 118,692,769 (-)NCBI
Celera3117,098,468 - 117,117,016 (-)NCBICelera
Cytogenetic Map3q36NCBI
Siglec1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,536,266 - 14,560,632 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,539,284 - 14,560,614 (-)NCBIChiLan1.0ChiLan1.0
SIGLEC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1203,526,791 - 3,551,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,526,791 - 3,552,309 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0203,769,118 - 3,795,678 (-)NCBIMhudiblu_PPA_v0panPan3
SIGLEC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,636,143 - 17,667,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,636,026 - 17,666,854 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,465,992 - 17,496,959 (+)NCBI
ROS_Cfam_1.02418,055,099 - 18,086,072 (+)NCBI
UMICH_Zoey_3.12417,649,935 - 17,680,868 (+)NCBI
UNSW_CanFamBas_1.02417,761,270 - 17,792,416 (+)NCBI
UU_Cfam_GSD_1.02418,088,684 - 18,119,668 (+)NCBI
Siglec1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,542,946 - 166,568,774 (+)NCBI
SpeTri2.0NW_00493648514,979,838 - 14,999,047 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIGLEC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,994,540 - 32,021,466 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,994,505 - 32,021,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,328,314 - 36,347,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SIGLEC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,371,605 - 34,417,105 (-)NCBI
ChlSab1.1 Ensembl234,371,519 - 34,392,034 (-)Ensembl
Vero_WHO_p1.0NW_02366607110,057,143 - 10,078,848 (+)NCBI
Siglec1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247414,781,347 - 4,802,893 (-)NCBI

Position Markers
Z36233  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382131,072,232 - 131,072,312UniSTSGRCm38
MGSCv372130,897,968 - 130,898,048UniSTSGRCm37
Celera2132,296,980 - 132,297,060UniSTS
Cytogenetic Map2F-H1UniSTS
Whitehead_YAC2 UniSTS
Z36234  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382131,083,578 - 131,083,683UniSTSGRCm38
MGSCv372130,909,314 - 130,909,419UniSTSGRCm37
Celera2132,308,198 - 132,308,303UniSTS
Cytogenetic Map2F-H1UniSTS
Whitehead_YAC2 UniSTS
Z36293  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382131,069,310 - 131,069,474UniSTSGRCm38
MGSCv372130,895,046 - 130,895,210UniSTSGRCm37
Celera2132,294,058 - 132,294,222UniSTS
Cytogenetic Map2F-H1UniSTS
Whitehead_YAC2 UniSTS
Sn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382131,078,146 - 131,078,617UniSTSGRCm38
MGSCv372130,903,882 - 130,904,353UniSTSGRCm37
Celera2132,302,894 - 132,303,365UniSTS
Cytogenetic Map2F-H1UniSTS
cM Map273.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107413756141413756Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110647738144647887Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2111085773154512747Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111331784145331901Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111331784145331901Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111331784145331901Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111331784145331901Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111709108145709243Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111781466145781606Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112370826146371085Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112370826146371085Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112370826146371085Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114457594132872237Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115370937149371074Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115370937149371074Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116235703150235821Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116464410150464554Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122376665142690215Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2123041095157041211Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123390053148858457Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2124095391158095504Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124600000168400000Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126200000135600000Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127822099161822198Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127822099161822198Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128331784132872237Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129500000163500000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:565
Count of miRNA genes:394
Interacting mature miRNAs:445
Transcripts:ENSMUST00000028794, ENSMUST00000110226, ENSMUST00000110227
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA396073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF155960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z36233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z36234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z36293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028794   ⟹   ENSMUSP00000028794
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2131,069,220 - 131,086,765 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110226   ⟹   ENSMUSP00000105855
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2131,083,573 - 131,086,765 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110227   ⟹   ENSMUSP00000105856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2131,072,054 - 131,086,765 (-)Ensembl
RefSeq Acc Id: NM_011426   ⟹   NP_035556
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,911,140 - 130,928,685 (-)NCBI
GRCm382131,069,220 - 131,086,765 (-)NCBI
MGSCv372130,894,956 - 130,912,501 (-)RGD
Celera2132,293,968 - 132,311,385 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499050   ⟹   XP_006499113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,911,792 - 130,928,697 (-)NCBI
GRCm382131,067,801 - 131,086,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499051   ⟹   XP_006499114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,911,915 - 130,928,697 (-)NCBI
GRCm382131,067,801 - 131,086,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159916   ⟹   XP_036015809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,911,802 - 130,928,551 (-)NCBI
RefSeq Acc Id: XM_036159918   ⟹   XP_036015811
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392130,911,793 - 130,928,697 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_035556   ⟸   NM_011426
- Peptide Label: precursor
- UniProtKB: Q62230 (UniProtKB/Swiss-Prot),   G3X8X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499113   ⟸   XM_006499050
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006499114   ⟸   XM_006499051
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000105856   ⟸   ENSMUST00000110227
RefSeq Acc Id: ENSMUSP00000105855   ⟸   ENSMUST00000110226
RefSeq Acc Id: ENSMUSP00000028794   ⟸   ENSMUST00000028794
RefSeq Acc Id: XP_036015811   ⟸   XM_036159918
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015809   ⟸   XM_036159916
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Promoters
RGD ID:6832709
Promoter ID:MM_KWN:31783
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000028794,   ENSMUST00000110226,   ENSMUST00000110227
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362130,911,946 - 130,912,802 (-)MPROMDB
RGD ID:6878788
Promoter ID:EPDNEW_M2845
Type:initiation region
Name:Siglec1_1
Description:Mus musculus sialic acid binding Ig-like lectin 1, sialoadhesin, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382131,086,297 - 131,086,357EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99668 AgrOrtholog
Ensembl Genes ENSMUSG00000027322 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028794 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105855 UniProtKB/TrEMBL
  ENSMUSP00000105856 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028794 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000110226 UniProtKB/TrEMBL
  ENSMUST00000110227 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99668 ENTREZGENE
NCBI Gene 20612 ENTREZGENE
Pfam C2-set_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Siglec1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3X8X6 ENTREZGENE, UniProtKB/TrEMBL
  H9KUZ2_MOUSE UniProtKB/TrEMBL
  H9KUZ3_MOUSE UniProtKB/TrEMBL
  Q62230 ENTREZGENE
  Q6KAT6_MOUSE UniProtKB/TrEMBL
  SN_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary D3YVZ3 UniProtKB/Swiss-Prot
  D3YVZ4 UniProtKB/Swiss-Prot
  O55216 UniProtKB/Swiss-Prot
  Q62228 UniProtKB/Swiss-Prot
  Q62229 UniProtKB/Swiss-Prot