Chd3 (chromodomain helicase DNA binding protein 3) - Rat Genome Database

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Gene: Chd3 (chromodomain helicase DNA binding protein 3) Mus musculus
Analyze
Symbol: Chd3
Name: chromodomain helicase DNA binding protein 3
RGD ID: 1323633
MGI Page MGI
Description: Predicted to have double-stranded DNA helicase activity; nucleosome-dependent ATPase activity; and transcription regulatory region sequence-specific DNA binding activity. Involved in chromatin assembly or disassembly. Localizes to NuRD complex. Is expressed in several structures, including early conceptus; genitourinary system; and pancreas epithelium. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2600010P09Rik; AF020312; Chd7; chromodomain-helicase-DNA-binding protein 3; MGC40857; Mi-2 alpha; P; Prp; Prp7; Prp9-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,234,099 - 69,260,325 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,234,099 - 69,260,232 (-)Ensembl
GRCm381169,343,273 - 69,369,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,343,273 - 69,369,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,156,775 - 69,182,928 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,159,466 - 69,192,513 (-)NCBImm8
Celera1176,297,125 - 76,352,461 (-)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriolar satellite  (ISO)
centrosome  (ISO)
cytoplasm  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO,TAS)
nucleus  (ISO)
NuRD complex  (IDA,ISO)
PML body  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:9407065   PMID:10204490   PMID:10349636   PMID:10655032   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:14610273  
PMID:15618518   PMID:16141072   PMID:16141073   PMID:17360773   PMID:17626165   PMID:18287559   PMID:18554416   PMID:18799693   PMID:20362542   PMID:20412781   PMID:21267068   PMID:21677750  
PMID:21930775   PMID:21972924   PMID:23201013   PMID:26919559   PMID:27806305   PMID:28378742   PMID:32658897  


Genomics

Comparative Map Data
Chd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,234,099 - 69,260,325 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,234,099 - 69,260,232 (-)Ensembl
GRCm381169,343,273 - 69,369,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,343,273 - 69,369,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,156,775 - 69,182,928 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,159,466 - 69,192,513 (-)NCBImm8
Celera1176,297,125 - 76,352,461 (-)NCBICelera
Cytogenetic Map11B3NCBI
CHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,884,796 - 7,912,760 (+)EnsemblGRCh38hg38GRCh38
GRCh38177,884,764 - 7,912,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,788,114 - 7,816,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,728,849 - 7,756,246 (+)NCBINCBI36hg18NCBI36
Build 34177,732,833 - 7,756,246NCBI
Celera177,815,816 - 7,843,619 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,683,207 - 7,710,664 (+)NCBIHuRef
CHM1_1177,797,025 - 7,824,854 (+)NCBICHM1_1
Chd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,063,629 - 54,090,030 (-)NCBI
Rnor_6.0 Ensembl1055,943,446 - 55,965,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01055,943,467 - 55,970,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,685,542 - 55,716,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,135,930 - 56,166,645 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,150,272 - 56,175,839 (-)NCBI
Celera1053,220,188 - 53,247,010 (-)NCBICelera
Cytogenetic Map10q24NCBI
Chd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,029,265 - 9,050,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,024,112 - 9,050,062 (-)NCBIChiLan1.0ChiLan1.0
CHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,910,644 - 7,934,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,910,644 - 7,933,115 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,919,803 - 7,947,787 (+)NCBIMhudiblu_PPA_v0panPan3
CHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,747,341 - 32,768,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,747,397 - 32,766,965 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,880,210 - 32,905,018 (+)NCBI
ROS_Cfam_1.0532,846,037 - 32,870,843 (+)NCBI
UMICH_Zoey_3.1532,813,756 - 32,838,554 (+)NCBI
UNSW_CanFamBas_1.0532,769,803 - 32,794,593 (+)NCBI
UU_Cfam_GSD_1.0532,948,914 - 32,973,715 (+)NCBI
Chd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,629,303 - 47,680,427 (+)NCBI
SpeTri2.0NW_0049365951,131,198 - 1,154,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,112,230 - 53,165,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,135,767 - 53,163,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,505,273 - 55,529,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHD3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,274,634 - 7,300,831 (+)NCBI
ChlSab1.1 Ensembl167,276,850 - 7,300,832 (+)Ensembl

Position Markers
Chd3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,343,386 - 69,344,205UniSTSGRCm38
MGSCv371169,156,888 - 69,157,707UniSTSGRCm37
Celera1176,297,238 - 76,298,057UniSTS
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS
UniSTS:493056  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,397,525 - 69,398,235UniSTSGRCm38
MGSCv371169,211,027 - 69,211,737UniSTSGRCm37
Celera1176,352,015 - 76,352,725UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2082
Count of miRNA genes:678
Interacting mature miRNAs:850
Transcripts:ENSMUST00000092971, ENSMUST00000108661, ENSMUST00000122992, ENSMUST00000128981, ENSMUST00000135909, ENSMUST00000144332, ENSMUST00000144701, ENSMUST00000146930, ENSMUST00000151436, ENSMUST00000154046
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_146019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF020311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF020312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM950040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU702731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB195281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ119759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK389202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000092971   ⟹   ENSMUSP00000090649
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,344,351 - 69,369,391 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108661   ⟹   ENSMUSP00000104301
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,343,273 - 69,369,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,343,273 - 69,348,610 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128981   ⟹   ENSMUSP00000122137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,345,136 - 69,364,779 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135909
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,343,273 - 69,346,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,353,870 - 69,354,467 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144701   ⟹   ENSMUSP00000114520
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,360,724 - 69,361,721 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146930
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,346,136 - 69,347,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151436   ⟹   ENSMUSP00000118172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,354,463 - 69,356,610 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154046   ⟹   ENSMUSP00000121192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,360,707 - 69,361,721 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238797   ⟹   ENSMUSP00000159107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,344,126 - 69,348,716 (-)Ensembl
RefSeq Acc Id: NM_146019   ⟹   NP_666131
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,252 (-)NCBI
GRCm381169,343,273 - 69,369,426 (-)NCBI
MGSCv371169,156,775 - 69,182,928 (-)RGD
Celera1176,297,125 - 76,335,587 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532880   ⟹   XP_006532943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532881   ⟹   XP_006532944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532882   ⟹   XP_006532945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532883   ⟹   XP_006532946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532884   ⟹   XP_006532947
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532885   ⟹   XP_006532948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,450 - 69,260,325 (-)NCBI
GRCm381169,343,624 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532886   ⟹   XP_006532949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532887   ⟹   XP_006532950
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,257,277 (-)NCBI
GRCm381169,343,273 - 69,366,460 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532888   ⟹   XP_006532951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532889   ⟹   XP_006532952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,258,546 (-)NCBI
GRCm381169,343,273 - 69,367,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532890   ⟹   XP_006532953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,104 - 69,260,325 (-)NCBI
GRCm381169,343,278 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314455   ⟹   XP_017169944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314456   ⟹   XP_017169945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245814   ⟹   XP_030101674
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
GRCm381169,343,273 - 69,369,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156566   ⟹   XP_036012459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,450 - 69,260,325 (-)NCBI
RefSeq Acc Id: XM_036156567   ⟹   XP_036012460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,450 - 69,260,325 (-)NCBI
RefSeq Acc Id: XM_036156568   ⟹   XP_036012461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,450 - 69,260,325 (-)NCBI
RefSeq Acc Id: XM_036156569   ⟹   XP_036012462
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,234,099 - 69,260,325 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_666131   ⟸   NM_146019
- UniProtKB: B1AR17 (UniProtKB/TrEMBL),   Q8BR71 (UniProtKB/TrEMBL),   Q8K0T3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532953   ⟸   XM_006532890
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006532944   ⟸   XM_006532881
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006532945   ⟸   XM_006532882
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006532946   ⟸   XM_006532883
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006532951   ⟸   XM_006532888
- Peptide Label: isoform X16
- UniProtKB: E9Q614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532948   ⟸   XM_006532885
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006532947   ⟸   XM_006532884
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006532943   ⟸   XM_006532880
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006532949   ⟸   XM_006532886
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006532952   ⟸   XM_006532889
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006532950   ⟸   XM_006532887
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017169945   ⟸   XM_017314456
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017169944   ⟸   XM_017314455
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101674   ⟸   XM_030245814
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000114520   ⟸   ENSMUST00000144701
RefSeq Acc Id: ENSMUSP00000118172   ⟸   ENSMUST00000151436
RefSeq Acc Id: ENSMUSP00000090649   ⟸   ENSMUST00000092971
RefSeq Acc Id: ENSMUSP00000159107   ⟸   ENSMUST00000238797
RefSeq Acc Id: ENSMUSP00000121192   ⟸   ENSMUST00000154046
RefSeq Acc Id: ENSMUSP00000104301   ⟸   ENSMUST00000108661
RefSeq Acc Id: ENSMUSP00000122137   ⟸   ENSMUST00000128981
RefSeq Acc Id: XP_036012462   ⟸   XM_036156569
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036012461   ⟸   XM_036156568
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012460   ⟸   XM_036156567
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036012459   ⟸   XM_036156566
- Peptide Label: isoform X6
Promoters
RGD ID:6820611
Promoter ID:MM_KWN:8055
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000013360
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,159,741 - 69,160,241 (-)MPROMDB
RGD ID:6820610
Promoter ID:MM_KWN:8057
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000013359
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,162,691 - 69,163,191 (-)MPROMDB
RGD ID:6820615
Promoter ID:MM_KWN:8059
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000013366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,167,441 - 69,167,941 (-)MPROMDB
RGD ID:6820614
Promoter ID:MM_KWN:8060
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000013364
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,170,851 - 69,171,351 (-)MPROMDB
RGD ID:6820612
Promoter ID:MM_KWN:8062
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000013361
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,178,291 - 69,178,802 (-)MPROMDB
RGD ID:6846822
Promoter ID:MM_ACW:7818
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney,   Lung,   MEF_B6,   Spleen
Transcripts:CHD3.NSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,181,346 - 69,181,846 (-)MPROMDB
RGD ID:6820607
Promoter ID:MM_KWN:8063
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000006726,   ENSMUST00000053025,   ENSMUST00000071693,   ENSMUST00000092971,   ENSMUST00000108661,   NM_146019
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,182,404 - 69,182,904 (-)MPROMDB
RGD ID:8675170
Promoter ID:EPDNEW_M15616
Type:multiple initiation site
Name:Chd3_1
Description:Mus musculus chromodomain helicase DNA binding protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,369,402 - 69,369,462EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1344395 AgrOrtholog
Ensembl Genes ENSMUSG00000018474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000090649 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000104301 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114520 UniProtKB/TrEMBL
  ENSMUSP00000118172 UniProtKB/TrEMBL
  ENSMUSP00000121192 UniProtKB/TrEMBL
  ENSMUSP00000122137 UniProtKB/TrEMBL
  ENSMUSP00000159107 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092971 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000108661 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000128981 UniProtKB/TrEMBL
  ENSMUST00000144701 UniProtKB/TrEMBL
  ENSMUST00000151436 UniProtKB/TrEMBL
  ENSMUST00000154046 UniProtKB/TrEMBL
  ENSMUST00000238797 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
InterPro CHD_C2 UniProtKB/TrEMBL
  CHD_N UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromo_domain/shadow UniProtKB/TrEMBL
  Chromodomain-like UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  DUF1086 UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report mmu:216848 UniProtKB/TrEMBL
MGD MGI:1344395 ENTREZGENE
NCBI Gene 216848 ENTREZGENE
Pfam CHDCT2 UniProtKB/TrEMBL
  CHDNT UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
  DUF1086 UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Chd3 PhenoGen
PROSITE CHROMO_1 UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/TrEMBL
  DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART CHROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  DUF1086 UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP Chromodomain-like UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
  SSF47095 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A5F8MQ82_MOUSE UniProtKB/TrEMBL
  B0QZH7_MOUSE UniProtKB/TrEMBL
  B0QZH8_MOUSE UniProtKB/TrEMBL
  B1AR17 ENTREZGENE, UniProtKB/TrEMBL
  E9Q614 ENTREZGENE, UniProtKB/TrEMBL
  F6V4V3_MOUSE UniProtKB/TrEMBL
  F7C528_MOUSE UniProtKB/TrEMBL
  O35327_MOUSE UniProtKB/TrEMBL
  O35328_MOUSE UniProtKB/TrEMBL
  Q7TML9_MOUSE UniProtKB/TrEMBL
  Q8BR71 ENTREZGENE, UniProtKB/TrEMBL
  Q8K0T3 ENTREZGENE, UniProtKB/TrEMBL