CHD7 (chromodomain helicase DNA binding protein 7) - Rat Genome Database
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Gene: CHD7 (chromodomain helicase DNA binding protein 7) Homo sapiens
Analyze
Symbol: CHD7
Name: chromodomain helicase DNA binding protein 7
RGD ID: 1323630
HGNC Page HGNC
Description: Predicted to have chromatin binding activity. Involved in several processes, including animal organ development; nervous system development; and regulation of growth hormone secretion. Localizes to nucleolus and nucleoplasm. Implicated in CHARGE syndrome; hypogonadotropic hypogonadism 5 with or without anosmia; and idiopathic scoliosis.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ATP-dependent helicase CHD7; CHARGE association; CHD-7; chromodomain helicase DNA binding protein 7 isoform CRA_e; chromodomain-helicase-DNA-binding protein 7; CRG; FLJ20357; FLJ20361; HH5; IS3; KAL5; KIAA1416
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl860,678,740 - 60,868,028 (+)EnsemblGRCh38hg38GRCh38
GRCh38860,678,740 - 60,868,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37861,591,321 - 61,780,587 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37861,591,299 - 61,780,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36861,753,893 - 61,942,019 (+)NCBINCBI36hg18NCBI36
Celera857,580,946 - 57,769,196 (+)NCBI
Cytogenetic Map8q12.2NCBI
HuRef857,078,404 - 57,267,234 (+)NCBIHuRef
CHM1_1861,643,239 - 61,832,394 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult heart development  (IEA,ISO)
adult walking behavior  (IEA,ISO)
aorta development  (ISO)
aorta morphogenesis  (IEA,ISO)
artery morphogenesis  (ISO)
atrioventricular canal development  (IEA,ISO)
blood circulation  (IEA,ISO)
blood vessel development  (ISO)
blood vessel remodeling  (IEA,ISO)
camera-type eye development  (ISO)
cardiac septum morphogenesis  (IEA,ISO)
central nervous system development  (IMP)
chromatin remodeling  (IEA,ISO)
cognition  (IMP)
cranial nerve development  (IMP)
DNA duplex unwinding  (IEA)
ear morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (IEA,ISO)
epithelium development  (IEA,ISO)
face development  (IMP)
female genitalia development  (IEA,ISO)
genitalia development  (IMP)
heart morphogenesis  (IMP,ISO)
in utero embryonic development  (IMP,ISO)
inner ear morphogenesis  (IMP,ISO)
innervation  (IEA,ISO)
limb development  (IMP)
locomotory behavior  (ISO)
nose development  (IMP,ISO)
olfactory behavior  (IEA,ISO)
olfactory bulb development  (IEA,ISO)
olfactory nerve development  (IEA,ISO)
positive regulation of multicellular organism growth  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
regulation of growth hormone secretion  (IMP)
regulation of neurogenesis  (IEA,ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IEA,ISO)
regulation of transcription, DNA-templated  (NAS)
response to bacterium  (IEA,ISO)
retina development in camera-type eye  (IMP)
right ventricular compact myocardium morphogenesis  (IEA,ISO)
roof of mouth development  (ISO)
rRNA processing  (IEA)
secondary palate development  (IMP)
semicircular canal morphogenesis  (IEA,ISO)
sensory perception of sound  (IEA,ISO)
skeletal system development  (IMP)
T cell differentiation  (IMP)
tissue remodeling  (ISO)
ventricular trabecula myocardium morphogenesis  (IEA,ISO)

Cellular Component
nucleolus  (IDA)
nucleoplasm  (IDA)
nucleus  (IDA,ISO,TAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal aortic valve morphology  (IAGP)
Abnormal cardiac septum morphology  (IAGP)
Abnormal lymphocyte morphology  (IAGP)
Abnormal morphology of female internal genitalia  (IAGP)
Abnormal palmar dermatoglyphics  (IAGP)
Abnormal soft palate morphology  (IAGP)
Abnormality of body height  (IAGP)
Abnormality of bone mineral density  (IAGP)
Abnormality of cardiovascular system morphology  (IAGP)
Abnormality of immune system physiology  (IAGP)
Abnormality of the adrenal glands  (IAGP)
Abnormality of the dentition  (IAGP)
Abnormality of the ear  (IAGP)
Abnormality of the metaphysis  (IAGP)
Abnormality of the ribs  (IAGP)
Abnormality of the voice  (IAGP)
Abnormality of tibia morphology  (IAGP)
Abnormality of vision  (IAGP)
Absence of pubertal development  (IAGP)
Absence of secondary sex characteristics  (IAGP)
Absent radius  (IAGP)
Alopecia  (IAGP)
Anal atresia  (IAGP)
Anal stenosis  (IAGP)
Anemia  (IAGP)
Anophthalmia  (IAGP)
Anosmia  (IAGP)
Anterior hypopituitarism  (IAGP)
Anxiety  (IAGP)
Aortic arch aneurysm  (IAGP)
Aplasia/Hypoplasia of the cerebellum  (IAGP)
Aplasia/Hypoplasia of the earlobes  (IAGP)
Aplasia/Hypoplasia of the eyebrow  (IAGP)
Aplasia/Hypoplasia of the thymus  (IAGP)
Aqueductal stenosis  (IAGP)
Arrhinencephaly  (IAGP)
Ataxia  (IAGP)
Atrial septal defect  (IAGP)
Atrioventricular canal defect  (IAGP)
Attention deficit hyperactivity disorder  (IAGP)
Autism  (IAGP)
Autoimmunity  (IAGP)
Autosomal dominant inheritance  (IAGP)
Bifid femur  (IAGP)
Bifid scrotum  (IAGP)
Bimanual synkinesia  (IAGP)
Brachydactyly  (IAGP)
Breast hypoplasia  (IAGP)
Camptodactyly  (IAGP)
Choanal atresia  (IAGP)
Chorioretinal coloboma  (IAGP)
Chronic diarrhea  (IAGP)
Cleft lip  (IAGP)
Cleft palate  (IAGP)
Cleft upper lip  (IAGP)
Clinodactyly of the 5th finger  (IAGP)
Color vision defect  (IAGP)
Congenital sensorineural hearing impairment  (IAGP)
Conotruncal defect  (IAGP)
Cryptorchidism  (IAGP)
Cupped ear  (IAGP)
Dandy-Walker malformation  (IAGP)
Decreased fertility  (IAGP)
Decreased response to growth hormone stimuation test  (IAGP)
Decreased serum testosterone level  (IAGP)
Decreased testicular size  (IAGP)
Delayed eruption of teeth  (IAGP)
Delayed puberty  (IAGP)
Delayed skeletal maturation  (IAGP)
Depressed nasal bridge  (IAGP)
Depressivity  (IAGP)
Desquamation of skin soon after birth  (IAGP)
Dimple chin  (IAGP)
Double outlet right ventricle  (IAGP)
Down-sloping shoulders  (IAGP)
Downslanted palpebral fissures  (IAGP)
Dry skin  (IAGP)
Duodenal atresia  (IAGP)
Dysarthria  (IAGP)
Dyspareunia  (IAGP)
Dysphagia  (IAGP)
Edema  (IAGP)
Eosinophilia  (IAGP)
Epicanthus  (IAGP)
Erectile dysfunction  (IAGP)
Erythroderma  (IAGP)
Esophageal atresia  (IAGP)
Eunuchoid habitus  (IAGP)
External ear malformation  (IAGP)
Eyelid coloboma  (IAGP)
Facial asymmetry  (IAGP)
Facial palsy  (IAGP)
Failure to thrive  (IAGP)
Feeding difficulties  (IAGP)
Feeding difficulties in infancy  (IAGP)
Female hypogonadism  (IAGP)
Fever  (IAGP)
Gait disturbance  (IAGP)
Gastroesophageal reflux  (IAGP)
Generalized joint laxity  (IAGP)
Global developmental delay  (IAGP)
Gonadotropin deficiency  (IAGP)
Gynecomastia  (IAGP)
Hand monodactyly  (IAGP)
Hand polydactyly  (IAGP)
Hearing impairment  (IAGP)
Hemivertebrae  (IAGP)
Hepatomegaly  (IAGP)
Highly arched eyebrow  (IAGP)
Holoprosencephaly  (IAGP)
Horseshoe kidney  (IAGP)
Hydronephrosis  (IAGP)
Hypertelorism  (IAGP)
Hypocalcemia  (IAGP)
Hypogonadotropic hypogonadism  (IAGP)
Hypoplasia of the ovary  (IAGP)
Hypoplasia of the semicircular canal  (IAGP)
Hypoplasia of the ulna  (IAGP)
Hypoplasia of the uterus  (IAGP)
Hypoplasia of the zygomatic bone  (IAGP)
Hyposmia  (IAGP)
Hypothalamic gonadotropin-releasing hormone deficiency  (IAGP)
Hypothyroidism  (IAGP)
Hypotonia  (IAGP)
Ichthyosis  (IAGP)
Impotence  (IAGP)
Increased female libido  (IAGP)
Intellectual disability  (IAGP)
Interrupted aortic arch  (IAGP)
Intrauterine growth retardation  (IAGP)
Iris coloboma  (IAGP)
Labial hypoplasia  (IAGP)
Lacrimation abnormality  (IAGP)
Laryngomalacia  (IAGP)
Lop ear  (IAGP)
Low-set, posteriorly rotated ears  (IAGP)
Lymphadenopathy  (IAGP)
Lymphoma  (IAGP)
Lymphopenia  (IAGP)
Malar flattening  (IAGP)
Male hypogonadism  (IAGP)
Microcephaly  (IAGP)
Micrognathia  (IAGP)
Micropenis  (IAGP)
Microphthalmia  (IAGP)
Microtia  (IAGP)
Mixed hearing impairment  (IAGP)
Muscle weakness  (IAGP)
Narrow face  (IAGP)
Narrow mouth  (IAGP)
Nephrotic syndrome  (IAGP)
Non-obstructive azoospermia  (IAGP)
Nystagmus  (IAGP)
Obesity  (IAGP)
Obsessive-compulsive behavior  (IAGP)
Omphalocele  (IAGP)
Optic atrophy  (IAGP)
Osteopenia  (IAGP)
Osteoporosis  (IAGP)
Overfolded helix  (IAGP)
Paraplegia  (IAGP)
Parathyroid hypoplasia  (IAGP)
Patent ductus arteriosus  (IAGP)
Pes cavus  (IAGP)
Pes planus  (IAGP)
Pneumonia  (IAGP)
Polyhydramnios  (IAGP)
Posterior choanal atresia  (IAGP)
Postnatal growth retardation  (IAGP)
Preauricular skin tag  (IAGP)
Primary amenorrhea  (IAGP)
Pruritus  (IAGP)
Ptosis  (IAGP)
Pulmonic stenosis  (IAGP)
Recurrent fractures  (IAGP)
Reduced bone mineral density  (IAGP)
Reduced number of teeth  (IAGP)
Renal agenesis  (IAGP)
Renal hypoplasia  (IAGP)
Respiratory insufficiency  (IAGP)
Retinal coloboma  (IAGP)
Scoliosis  (IAGP)
Secondary amenorrhea  (IAGP)
Seizure  (IAGP)
Sensorineural hearing impairment  (IAGP)
Sepsis  (IAGP)
Severe combined immunodeficiency  (IAGP)
Short stature  (IAGP)
Short thumb  (IAGP)
Short toe  (IAGP)
Skeletal dysplasia  (IAGP)
Sparse body hair  (IAGP)
Splenomegaly  (IAGP)
Sporadic  (IAGP)
Square face  (IAGP)
Strabismus  (IAGP)
Talipes  (IAGP)
Tetralogy of Fallot  (IAGP)
Thickened skin  (IAGP)
Thyroiditis  (IAGP)
Tracheoesophageal fistula  (IAGP)
Tremor  (IAGP)
Umbilical hernia  (IAGP)
Ventricular septal defect  (IAGP)
Vesicoureteral reflux  (IAGP)
Visual impairment  (IAGP)
Webbed neck  (IAGP)
Wide intermamillary distance  (IAGP)
References

Additional References at PubMed
PMID:8125298   PMID:9556299   PMID:10590394   PMID:10718198   PMID:10737800   PMID:12168954   PMID:12477932   PMID:14702039   PMID:15300250   PMID:15302935   PMID:16118347   PMID:16155193  
PMID:16169932   PMID:16400610   PMID:16763960   PMID:17253929   PMID:17299439   PMID:17436250   PMID:17603073   PMID:17661815   PMID:17684005   PMID:17937444   PMID:18074359   PMID:18472328  
PMID:18484313   PMID:18505430   PMID:18834967   PMID:18978652   PMID:19021638   PMID:19065520   PMID:19159393   PMID:19248844   PMID:19279158   PMID:19336370   PMID:20130577   PMID:20186815  
PMID:20301296   PMID:20301509   PMID:20301533   PMID:20301552   PMID:20301753   PMID:20425471   PMID:20453063   PMID:20467437   PMID:20507341   PMID:20591827   PMID:20634891   PMID:20736290  
PMID:20800603   PMID:20811636   PMID:20925924   PMID:20943277   PMID:21041284   PMID:21158681   PMID:21378379   PMID:21532573   PMID:21554267   PMID:21931733   PMID:22302456   PMID:22399515  
PMID:22424883   PMID:22461308   PMID:22539353   PMID:22586326   PMID:22646239   PMID:22724017   PMID:23134727   PMID:23187639   PMID:23396134   PMID:23495722   PMID:23533228   PMID:23667531  
PMID:23883829   PMID:23956205   PMID:24211491   PMID:24626090   PMID:24705355   PMID:24732674   PMID:24979395   PMID:25077900   PMID:25257999   PMID:25472840   PMID:25553296   PMID:25689927  
PMID:26187070   PMID:26334530   PMID:26411921   PMID:26496610   PMID:26551301   PMID:26590800   PMID:26687479   PMID:26741373   PMID:26813943   PMID:26921530   PMID:26928066   PMID:26949251  
PMID:27248496   PMID:27418670   PMID:27586276   PMID:27634302   PMID:27955690   PMID:28007623   PMID:28152519   PMID:28192407   PMID:28475860   PMID:28533432   PMID:28611094   PMID:28649742  
PMID:28794006   PMID:28927264   PMID:29117863   PMID:29144511   PMID:29152903   PMID:29300383   PMID:29321579   PMID:29395067   PMID:29432577   PMID:29440260   PMID:29467282   PMID:29467333  
PMID:29507755   PMID:29509190   PMID:29615807   PMID:29660852   PMID:29787736   PMID:29844126   PMID:29845934   PMID:30021884   PMID:30343692   PMID:30463901   PMID:30585729   PMID:30733481  
PMID:30804502   PMID:30850678   PMID:31146700   PMID:31177093   PMID:31289371   PMID:31315586   PMID:31527615   PMID:31586073   PMID:31689711   PMID:31729160   PMID:31833191   PMID:31924193  
PMID:32314193   PMID:33001583   PMID:33188175  


Genomics

Comparative Map Data
CHD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl860,678,740 - 60,868,028 (+)EnsemblGRCh38hg38GRCh38
GRCh38860,678,740 - 60,868,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37861,591,321 - 61,780,587 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37861,591,299 - 61,780,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36861,753,893 - 61,942,019 (+)NCBINCBI36hg18NCBI36
Celera857,580,946 - 57,769,196 (+)NCBI
Cytogenetic Map8q12.2NCBI
HuRef857,078,404 - 57,267,234 (+)NCBIHuRef
CHM1_1861,643,239 - 61,832,394 (+)NCBICHM1_1
Chd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3948,690,345 - 8,868,449 (+)NCBIGRCm39mm39
GRCm3848,690,402 - 8,868,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl48,690,406 - 8,867,659 (+)EnsemblGRCm38mm10GRCm38
MGSCv3748,618,068 - 8,793,957 (+)NCBIGRCm37mm9NCBIm37
MGSCv3648,617,551 - 8,793,957 (+)NCBImm8
Celera48,587,948 - 8,703,577 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map43.68NCBI
Chd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2521,812,007 - 21,995,358 (+)NCBI
Rnor_6.0 Ensembl521,830,882 - 21,950,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0521,769,087 - 21,952,036 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0526,520,706 - 26,702,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4522,549,237 - 22,710,257 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1522,591,442 - 22,710,257 (+)NCBI
Celera521,141,679 - 21,262,470 (+)NCBICelera
Cytogenetic Map5q13NCBI
Chd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544417,858,771 - 18,067,248 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544417,859,999 - 18,067,623 (-)NCBIChiLan1.0ChiLan1.0
CHD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1858,816,836 - 58,945,186 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl858,816,840 - 58,945,186 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0857,091,002 - 57,282,471 (+)NCBIMhudiblu_PPA_v0panPan3
CHD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2911,156,340 - 11,283,627 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12911,115,865 - 11,284,713 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Chd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649612,381,225 - 12,505,121 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl472,571,874 - 72,754,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1472,572,455 - 72,754,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2479,030,873 - 79,152,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1856,654,939 - 56,782,803 (+)NCBI
ChlSab1.1 Ensembl856,657,826 - 56,785,804 (+)Ensembl
Chd7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474431,103,053 - 31,302,314 (-)NCBI

Position Markers
WI-11635  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,599,398 - 61,599,522UniSTSGRCh37
Build 36861,761,952 - 61,762,076RGDNCBI36
Celera857,589,204 - 57,589,328RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,086,018 - 57,086,142UniSTS
GeneMap99-GB4 RH Map8327.65UniSTS
Whitehead-RH Map8418.8UniSTS
NCBI RH Map8795.9UniSTS
RH94208  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,779,112 - 61,779,278UniSTSGRCh37
Build 36861,941,666 - 61,941,832RGDNCBI36
Celera857,768,843 - 57,769,009RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,265,759 - 57,265,925UniSTS
GeneMap99-GB4 RH Map8327.55UniSTS
SHGC-80117  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,667,080 - 61,667,368UniSTSGRCh37
Build 36861,829,634 - 61,829,922RGDNCBI36
Celera857,656,881 - 57,657,169RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,153,675 - 57,153,963UniSTS
TNG Radiation Hybrid Map830721.0UniSTS
RH120823  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,765,456 - 61,765,753UniSTSGRCh37
Build 36861,928,010 - 61,928,307RGDNCBI36
Celera857,755,183 - 57,755,480RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,252,089 - 57,252,386UniSTS
TNG Radiation Hybrid Map830666.0UniSTS
RH123329  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,665,061 - 61,665,332UniSTSGRCh37
Build 36861,827,615 - 61,827,886RGDNCBI36
Celera857,654,862 - 57,655,133RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,151,656 - 57,151,927UniSTS
TNG Radiation Hybrid Map830721.0UniSTS
RH119011  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,606,274 - 61,606,606UniSTSGRCh37
Build 36861,768,828 - 61,769,160RGDNCBI36
Celera857,596,079 - 57,596,411RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,092,892 - 57,093,224UniSTS
TNG Radiation Hybrid Map830759.0UniSTS
TNG Radiation Hybrid Map830755.0UniSTS
D8S1349E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,778,200 - 61,778,289UniSTSGRCh37
Build 36861,940,754 - 61,940,843RGDNCBI36
Celera857,767,931 - 57,768,020RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,264,847 - 57,264,936UniSTS
SHGC-142634  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,713,098 - 61,713,439UniSTSGRCh37
Build 36861,875,652 - 61,875,993RGDNCBI36
Celera857,702,880 - 57,703,227RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,199,725 - 57,200,072UniSTS
TNG Radiation Hybrid Map830707.0UniSTS
D8S1986  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,735,902 - 61,736,138UniSTSGRCh37
Build 36861,898,456 - 61,898,692RGDNCBI36
Celera857,725,694 - 57,725,926RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,222,535 - 57,222,771UniSTS
SHGC-57936  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,780,172 - 61,780,323UniSTSGRCh37
Build 36861,942,726 - 61,942,877RGDNCBI36
Celera857,769,903 - 57,770,054RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,266,819 - 57,266,970UniSTS
TNG Radiation Hybrid Map830648.0UniSTS
D8S2048  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37861,610,027 - 61,610,326UniSTSGRCh37
Build 36861,772,581 - 61,772,880RGDNCBI36
Celera857,599,832 - 57,600,131RGD
Cytogenetic Map8q12.2UniSTS
HuRef857,096,645 - 57,096,944UniSTS
TNG Radiation Hybrid Map830750.0UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2618
Count of miRNA genes:1145
Interacting mature miRNAs:1456
Transcripts:ENST00000423902, ENST00000524602, ENST00000525508, ENST00000526846, ENST00000527825, ENST00000527900, ENST00000527921, ENST00000528280, ENST00000529472, ENST00000531695, ENST00000532149
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 224 40 176 35 718 38 713 157 927 54 205 325 3 8 418 1
Low 2212 2875 1546 585 1210 423 3622 2002 2798 361 1244 1284 171 1 1196 2356 3 2
Below cutoff 3 74 4 4 21 4 21 36 8 3 9 3 14 1

Sequence

Nucleotide Sequences