Focad (focadhesin) - Rat Genome Database

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Gene: Focad (focadhesin) Mus musculus
Analyze
Symbol: Focad
Name: focadhesin
RGD ID: 1323521
MGI Page MGI
Description: Predicted to be involved in regulation of post-transcriptional gene silencing. Predicted to be located in focal adhesion. Is expressed in cranium; diencephalon lateral wall ventricular layer; and midbrain ventricular layer. Orthologous to human FOCAD (focadhesin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC230393; Kiaa1797; mKIAA1797; novel protein containing HEAT repeats; uncharacterized protein KIAA1797
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,012,858 - 88,329,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,012,866 - 88,329,248 (+)EnsemblGRCm39 Ensembl
GRCm38488,094,620 - 88,411,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,094,629 - 88,411,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv37487,740,534 - 88,056,915 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36487,565,861 - 87,882,242 (+)NCBIMGSCv36mm8
Celera486,619,576 - 86,926,697 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map441.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12693553   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:30240734   PMID:32325033   PMID:34434215  


Genomics

Comparative Map Data
Focad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,012,858 - 88,329,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,012,866 - 88,329,248 (+)EnsemblGRCm39 Ensembl
GRCm38488,094,620 - 88,411,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,094,629 - 88,411,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv37487,740,534 - 88,056,915 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36487,565,861 - 87,882,242 (+)NCBIMGSCv36mm8
Celera486,619,576 - 86,926,697 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map441.4NCBI
FOCAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38920,655,625 - 20,995,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl920,658,309 - 20,995,955 (+)EnsemblGRCh38hg38GRCh38
GRCh37920,658,308 - 20,995,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36920,648,309 - 20,985,954 (+)NCBINCBI36Build 36hg18NCBI36
Build 34920,648,308 - 20,985,954NCBI
Celera920,596,817 - 20,934,232 (+)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef920,620,945 - 20,958,811 (+)NCBIHuRef
CHM1_1920,658,015 - 20,995,735 (+)NCBICHM1_1
T2T-CHM13v2.0920,669,421 - 21,009,826 (+)NCBIT2T-CHM13v2.0
Focad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85107,610,489 - 107,932,485 (+)NCBIGRCr8
mRatBN7.25102,564,560 - 102,886,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5102,564,598 - 102,886,582 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05106,409,411 - 106,729,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5106,409,456 - 106,730,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05110,390,888 - 110,709,983 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45107,467,537 - 107,704,012 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15107,360,765 - 107,708,917 (+)NCBI
Celera5100,226,285 - 100,542,835 (-)NCBICelera
Cytogenetic Map5q32NCBI
Focad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543422,951,572 - 23,230,545 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543422,951,571 - 23,230,790 (+)NCBIChiLan1.0ChiLan1.0
FOCAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,551,838 - 103,876,936 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,547,279 - 103,882,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0920,479,301 - 20,807,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,145,759 - 21,459,758 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,169,176 - 21,459,758 (+)Ensemblpanpan1.1panPan2
FOCAD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,265,717 - 40,577,816 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1140,265,640 - 40,577,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1138,928,212 - 39,240,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,207,527 - 41,519,558 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1141,241,965 - 41,519,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11139,898,503 - 40,211,709 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01139,681,955 - 40,000,022 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01140,322,038 - 40,635,712 (+)NCBIUU_Cfam_GSD_1.0
Focad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947154,692,219 - 154,974,020 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366522,361,735 - 2,643,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366522,361,776 - 2,643,527 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOCAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,942,463 - 202,258,794 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,938,993 - 202,258,924 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,618,600 - 225,842,443 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Focad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473624,675,545 - 24,999,585 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473624,635,453 - 24,999,908 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Focad
9668 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:911
Count of miRNA genes:494
Interacting mature miRNAs:571
Transcripts:ENSMUST00000097992, ENSMUST00000107147, ENSMUST00000107148, ENSMUST00000129967, ENSMUST00000130603, ENSMUST00000144388, ENSMUST00000147527, ENSMUST00000159342, ENSMUST00000161058, ENSMUST00000162039
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8075244588769188Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
10412176Habiir3_mhyperoxic acute lung injury imprinted region 3 (mouse)Not determined48375713094293740Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK089786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL831756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX572638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02011305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000097992   ⟹   ENSMUSP00000095602
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,012,867 - 88,329,243 (+)Ensembl
GRCm38.p6 Ensembl488,094,630 - 88,411,006 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107147   ⟹   ENSMUSP00000102765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,318,802 - 88,329,248 (+)Ensembl
GRCm38.p6 Ensembl488,400,565 - 88,411,011 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,263,604 - 88,329,246 (+)Ensembl
GRCm38.p6 Ensembl488,345,367 - 88,411,009 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,012,866 - 88,040,049 (+)Ensembl
GRCm38.p6 Ensembl488,094,629 - 88,121,812 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,221,374 - 88,244,472 (+)Ensembl
GRCm38.p6 Ensembl488,303,137 - 88,326,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,205,872 - 88,221,867 (+)Ensembl
GRCm38.p6 Ensembl488,287,635 - 88,303,630 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,042,673 - 88,072,957 (+)Ensembl
GRCm38.p6 Ensembl488,124,436 - 88,154,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159342   ⟹   ENSMUSP00000124298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,039,536 - 88,329,241 (+)Ensembl
GRCm38.p6 Ensembl488,121,299 - 88,411,004 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,012,882 - 88,101,281 (+)Ensembl
GRCm38.p6 Ensembl488,094,645 - 88,183,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl488,318,587 - 88,325,456 (+)Ensembl
GRCm38.p6 Ensembl488,400,350 - 88,407,219 (+)Ensembl
RefSeq Acc Id: NM_001081184   ⟹   NP_001074653
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,012,862 - 88,329,248 (+)NCBI
GRCm38488,094,630 - 88,411,011 (+)ENTREZGENE
MGSCv37487,740,534 - 88,056,915 (+)RGD
Celera486,619,576 - 86,926,697 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001419409   ⟹   NP_001406338
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,012,862 - 88,329,248 (+)NCBI
RefSeq Acc Id: NM_001419410   ⟹   NP_001406339
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,042,674 - 88,329,248 (+)NCBI
RefSeq Acc Id: NM_001419411   ⟹   NP_001406340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,012,862 - 88,102,832 (+)NCBI
RefSeq Acc Id: NM_001419412   ⟹   NP_001406341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,012,862 - 88,102,832 (+)NCBI
RefSeq Acc Id: XM_006537884   ⟹   XP_006537947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,054,077 - 88,329,248 (+)NCBI
GRCm38488,135,840 - 88,411,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006537885   ⟹   XP_006537948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,367 - 88,271,190 (+)NCBI
GRCm38488,113,738 - 88,352,953 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006537886   ⟹   XP_006537949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,363 - 88,260,548 (+)NCBI
GRCm38488,113,736 - 88,342,311 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253421   ⟹   XP_030109281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,012,858 - 88,329,248 (+)NCBI
GRCm38488,094,620 - 88,411,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163996   ⟹   XP_036019889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,375 - 88,329,248 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163997   ⟹   XP_036019890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,374 - 88,329,248 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163998   ⟹   XP_036019891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,376 - 88,329,248 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164000   ⟹   XP_036019893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,368 - 88,310,285 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164001   ⟹   XP_036019894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39488,031,358 - 88,257,391 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001074653   ⟸   NM_001081184
- Peptide Label: isoform 1
- UniProtKB: Q3UK73 (UniProtKB/Swiss-Prot),   Q3UJY8 (UniProtKB/Swiss-Prot),   Q3TPY9 (UniProtKB/Swiss-Prot),   Q0P620 (UniProtKB/Swiss-Prot),   Q6PGE3 (UniProtKB/Swiss-Prot),   A2AKG8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006537949   ⟸   XM_006537886
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006537948   ⟸   XM_006537885
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006537947   ⟸   XM_006537884
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030109281   ⟸   XM_030253421
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000124298   ⟸   ENSMUST00000159342
RefSeq Acc Id: ENSMUSP00000102765   ⟸   ENSMUST00000107147
RefSeq Acc Id: ENSMUSP00000095602   ⟸   ENSMUST00000097992
RefSeq Acc Id: XP_036019894   ⟸   XM_036164001
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036019893   ⟸   XM_036164000
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036019890   ⟸   XM_036163997
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019889   ⟸   XM_036163996
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036019891   ⟸   XM_036163998
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001406338   ⟸   NM_001419409
- Peptide Label: isoform 2
- UniProtKB: E9PYJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406340   ⟸   NM_001419411
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001406341   ⟸   NM_001419412
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001406339   ⟸   NM_001419410
- Peptide Label: isoform 3
Protein Domains
DUF3730   Focadhesin C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AKG8-F1-model_v2 AlphaFold A2AKG8 1-1798 view protein structure

Promoters
RGD ID:6834950
Promoter ID:MM_KWN:38304
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001081184,   OTTMUST00000026609,   UC008TMT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36487,740,221 - 87,740,721 (+)MPROMDB
RGD ID:6883794
Promoter ID:EPDNEW_M5348
Type:initiation region
Name:Focad_1
Description:Mus musculus focadhesin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5349  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38488,094,625 - 88,094,685EPDNEW
RGD ID:6883796
Promoter ID:EPDNEW_M5349
Type:multiple initiation site
Name:Focad_2
Description:Mus musculus focadhesin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5348  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38488,352,843 - 88,352,903EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676921 AgrOrtholog
Ensembl Genes ENSMUSG00000038368 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000097992 ENTREZGENE
  ENSMUST00000097992.10 UniProtKB/Swiss-Prot
  ENSMUST00000107147.2 UniProtKB/Swiss-Prot
  ENSMUST00000159342 ENTREZGENE
  ENSMUST00000159342.8 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3730 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Focadhesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Focadhesin/RST1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230393 UniProtKB/Swiss-Prot
MGD MGI:2676921 ENTREZGENE
NCBI Gene 230393 ENTREZGENE
PANTHER FOCADHESIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16212 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3730 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Focadhesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Focad PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AKG8 ENTREZGENE
  E9PYJ6 ENTREZGENE, UniProtKB/TrEMBL
  FOCAD_MOUSE UniProtKB/Swiss-Prot
  Q0P620 ENTREZGENE
  Q3TPY9 ENTREZGENE
  Q3UJY8 ENTREZGENE
  Q3UK73 ENTREZGENE
  Q6PGE3 ENTREZGENE
  Q80T90_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q0P620 UniProtKB/Swiss-Prot
  Q3TPY9 UniProtKB/Swiss-Prot
  Q3UJY8 UniProtKB/Swiss-Prot
  Q3UK73 UniProtKB/Swiss-Prot
  Q6PGE3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-25 Focad  focadhesin  BC057079  cDNA sequence BC057079  Symbol and/or name change 5135510 APPROVED