1700030K09Rik (RIKEN cDNA 1700030K09 gene) - Rat Genome Database
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Gene: 1700030K09Rik (RIKEN cDNA 1700030K09 gene) Mus musculus
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Symbol: 1700030K09Rik
Name: RIKEN cDNA 1700030K09 gene
RGD ID: 1323519
MGI Page MGI
Description: Orthologous to human C19orf44 (chromosome 19 open reading frame 44); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); benzo[a]pyrene (ortholog); benzo[e]pyrene (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC72254; uncharacterized protein C19orf44 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,197,724 - 73,214,385 (+)NCBIGRCm39mm39
GRCm38872,443,880 - 72,460,541 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,443,880 - 72,461,001 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,967,779 - 74,984,440 (+)NCBIGRCm37mm9NCBIm37
MGSCv36875,372,915 - 75,389,530 (+)NCBImm8
Celera876,782,393 - 76,803,189 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21677750  


Genomics

Comparative Map Data
1700030K09Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,197,724 - 73,214,385 (+)NCBIGRCm39mm39
GRCm38872,443,880 - 72,460,541 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,443,880 - 72,461,001 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,967,779 - 74,984,440 (+)NCBIGRCm37mm9NCBIm37
MGSCv36875,372,915 - 75,389,530 (+)NCBImm8
Celera876,782,393 - 76,803,189 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
C19orf44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1916,496,394 - 16,521,352 (+)EnsemblGRCh38hg38GRCh38
GRCh381916,496,382 - 16,521,369 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371916,607,187 - 16,632,180 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,468,205 - 16,493,163 (+)NCBINCBI36hg18NCBI36
Celera1916,509,042 - 16,534,003 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,175,706 - 16,200,749 (+)NCBIHuRef
CHM1_11916,606,603 - 16,631,665 (+)NCBICHM1_1
RGD1311847
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,081,329 - 19,097,329 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,081,333 - 19,097,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01618,944,080 - 18,960,080 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,798,175 - 17,814,175 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11617,798,173 - 17,814,173 (-)NCBI
Celera1617,599,777 - 17,615,780 (-)NCBICelera
Cytogenetic Map16p14NCBI
LOC102026345
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555241,235,137 - 1,245,526 (-)NCBIChiLan1.0ChiLan1.0
C19H19orf44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11916,965,343 - 16,991,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,970,877 - 16,987,604 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01915,986,955 - 16,011,991 (+)NCBIMhudiblu_PPA_v0panPan3
C20H19orf44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2046,020,441 - 46,037,713 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12046,019,750 - 46,039,201 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH19orf44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365964,095,441 - 4,120,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H19orf44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,077,140 - 61,105,111 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,076,623 - 61,105,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,664,710 - 60,674,792 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf44
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,007,289 - 15,028,062 (+)NCBI
CUNH19orf44
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908937,199 - 949,594 (-)NCBI

Position Markers
D8Mit101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,457,221 - 72,457,366UniSTSGRCm38
MGSCv37874,981,120 - 74,981,265UniSTSGRCm37
Celera876,795,322 - 76,795,473UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.0UniSTS
Whitehead Genetic835.0UniSTS
Whitehead_YAC8 UniSTS
RH124924  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,460,574 - 72,460,771UniSTSGRCm38
MGSCv37874,984,473 - 74,984,670UniSTSGRCm37
Celera876,803,222 - 76,803,419UniSTS
Cytogenetic Map8B3.3UniSTS
D8Wsu96e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38872,460,530 - 72,460,779UniSTSGRCm38
MGSCv37874,984,429 - 74,984,678UniSTSGRCm37
Celera876,803,178 - 76,803,427UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map834.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:520
Count of miRNA genes:307
Interacting mature miRNAs:341
Transcripts:ENSMUST00000064853, ENSMUST00000121902, ENSMUST00000139130
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000064853   ⟹   ENSMUSP00000063244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,443,880 - 72,461,001 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121902   ⟹   ENSMUSP00000113279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,443,932 - 72,460,641 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139130
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,457,890 - 72,458,651 (+)Ensembl
RefSeq Acc Id: NM_028170   ⟹   NP_082446
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,197,724 - 73,214,385 (+)NCBI
GRCm38872,443,880 - 72,460,541 (+)ENTREZGENE
MGSCv37874,967,779 - 74,984,440 (+)RGD
Celera876,782,393 - 76,803,189 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509750   ⟹   XP_006509813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,197,729 - 73,214,385 (+)NCBI
GRCm38872,443,896 - 72,460,541 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242328   ⟹   XP_011240630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,197,849 - 73,214,385 (+)NCBI
GRCm38872,444,007 - 72,460,541 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870463
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39873,197,845 - 73,214,385 (+)NCBI
GRCm38872,444,003 - 72,460,541 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_082446   ⟸   NM_028170
- UniProtKB: Q922C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509813   ⟸   XM_006509750
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011240630   ⟸   XM_011242328
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000063244   ⟸   ENSMUST00000064853
RefSeq Acc Id: ENSMUSP00000113279   ⟸   ENSMUST00000121902
Protein Domains
DUF4614

Promoters
RGD ID:8667471
Promoter ID:EPDNEW_M11767
Type:initiation region
Name:1700030K09Rik_1
Description:Mus musculus RIKEN cDNA 1700030K09 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,443,911 - 72,443,971EPDNEW
RGD ID:6842613
Promoter ID:MM_KWN:54870
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000121902,   OTTMUST00000078711,   OTTMUST00000078727
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,967,434 - 74,967,934 (+)MPROMDB
RGD ID:6842475
Promoter ID:MM_KWN:54871
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   ES_Cell
Transcripts:UC009MFZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,967,696 - 74,968,196 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919504 AgrOrtholog
Ensembl Genes ENSMUSG00000052794 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063244 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113279 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064853 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121902 UniProtKB/TrEMBL
InterPro C19orf44-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72254 UniProtKB/Swiss-Prot
MGD MGI:1919504 ENTREZGENE
NCBI Gene 72254 ENTREZGENE
PANTHER PTHR22409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4614 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 1700030K09Rik PhenoGen
UniGene Mm.275872 ENTREZGENE
  Mm.30136 ENTREZGENE
UniProt CS044_MOUSE UniProtKB/Swiss-Prot
  E9Q7C0_MOUSE UniProtKB/TrEMBL
  Q922C1 ENTREZGENE
  Q9CVT9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UZJ9 UniProtKB/Swiss-Prot