H2bc15 (H2B clustered histone 15)

Gene: H2bc15 (H2B clustered histone 15) Mus musculus

Analyze

Symbol:

H2bc15

Name:

H2B clustered histone 15

RGD ID:

1323489

MGI Page

MGI

Description:

Predicted to be located in cytosol and nucleoplasm. Orthologous to several human genes including H2BC13 (H2B clustered histone 13).

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

H2B 291A; H2bc11; H2bc13; H2bc7; Hist1h; Hist1h2bf; Hist1h2bj; Hist1h2bl; Hist1h2bn; histone 1, H2bn; histone cluster 1, H2bn; histone H2B type 1-F/J/L

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	H2BC15 (H2B clustered histone 15)	HGNC	OMA, OrthoDB, Treefam
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100985638 (histone H2B type 1-N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC478743 (histone H2B type 1-C/E/F/G/I)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	H2BC15 (H2B clustered histone 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	H2BC13 (H2B clustered histone 13)	HGNC	OMA, Treefam
Homo sapiens (human):	H2BC14 (H2B clustered histone 14)	HGNC	HomoloGene
Homo sapiens (human):	H2BC5 (H2B clustered histone 5)	HGNC	Treefam
Homo sapiens (human):	H2BC18 (H2B clustered histone 18)	HGNC	Treefam
Homo sapiens (human):	H2BC11 (H2B clustered histone 11)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	H2BC13 (H2B clustered histone 13)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Homo sapiens (human):	H2BC14 (H2B clustered histone 14)	Alliance	DIOPT (HGNC\|OMA)
Danio rerio (zebrafish):	hist2h2l (histone 2, H2, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HTB1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HTB2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-34	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-41	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-54	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-66	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG17949	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33868	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33870	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33872	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33874	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33876	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33878	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33880	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33882	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33884	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33886	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33888	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33890	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33892	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33894	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33896	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33898	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33900	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33902	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33904	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33906	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33908	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	His2B:CG33910	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-22	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-29	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-44	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-48	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-52	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-58	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-62	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	his-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	h2bc21	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	21,938,246 - 21,938,723 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	21,938,293 - 21,938,673 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	21,754,076 - 21,754,553 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	21,754,123 - 21,754,503 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	21,845,992 - 21,846,372 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	21,761,588 - 21,761,968 (+)	NCBI		MGSCv36	mm8
Celera	13	22,029,612 - 22,029,992 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	7.95	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-diaminodiphenylmethane (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (EXP)

benzene (EXP)

benzo[a]pyrene (EXP)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (EXP)

berberine (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

carbon nanotube (EXP)

chrysene (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (ISO)

deguelin (ISO)

dibenz[a,h]anthracene (EXP)

dichloroacetic acid (EXP)

disodium selenite (ISO)

fenpyroximate (ISO)

ferric oxide (EXP)

folic acid (EXP)

genistein (ISO)

glyphosate (EXP)

menadione (ISO)

methyl methacrylate (EXP)

N-Nitrosopyrrolidine (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP)

pyrimidifen (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium dichromate (EXP)

streptozocin (EXP)

sunitinib (ISO)

tebufenpyrad (ISO)

tetraphene (EXP)

trovafloxacin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antimicrobial humoral immune response mediated by antimicrobial peptide (ISO)

innate immune response in mucosa (ISO)

Cellular Component

cytosol (ISO)

extracellular space (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

systemic lupus erythematosus pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12040188	PMID:12408966	PMID:17690254	PMID:30550785

Genomics

Comparative Map Data

H2bc15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	21,938,246 - 21,938,723 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	21,938,293 - 21,938,673 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	21,754,076 - 21,754,553 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	21,754,123 - 21,754,503 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	21,845,992 - 21,846,372 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	21,761,588 - 21,761,968 (+)	NCBI		MGSCv36	mm8
Celera	13	22,029,612 - 22,029,992 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	7.95	NCBI

H2BC15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	27,838,569 - 27,839,110 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	27,838,545 - 27,855,709 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	27,806,347 - 27,806,888 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	27,914,343 - 27,914,873 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	27,914,418 - 27,914,867	NCBI
Celera	6	29,412,400 - 29,412,930 (+)	NCBI		Celera
Cytogenetic Map	6	p22.1	NCBI
HuRef	6	27,614,094 - 27,614,542 (+)	NCBI		HuRef
CHM1_1	6	27,808,587 - 27,809,035 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	27,708,242 - 27,708,783 (+)	NCBI		T2T-CHM13v2.0

LOC100985638
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	42,481,228 - 42,502,436 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	38,483,019 - 38,503,445 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	27,667,886 - 27,685,282 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	28,342,891 - 28,356,723 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	28,343,094 - 28,370,373 (+)	Ensembl	panpan1.1		panPan2

LOC478743
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	35	23,971,560 - 23,972,352 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl	35	24,178,247 - 24,181,892 (-)	Ensembl		ROS_Cfam_1.0 Ensembl

H2BC15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	21,606,754 - 21,610,955 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	23,110,568 - 23,111,082 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in H2bc15
13 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301890	Adip7_m	adiposity 7 (mouse)			Not determined		13	1	23454672	Mouse
1301227	Skull19_m	skull morphology 19 (mouse)			Not determined		13	1	23454672	Mouse
1301661	Tshp13_m	tooth shape 13 (mouse)			Not determined		13	1	23454672	Mouse
1301255	Cd4ts6_m	CD4 T cell subset 6 (mouse)			Not determined		13	168545	34168684	Mouse
10449140	Eosn2_m	eosinophil differential 2 (mouse)					13	221311	34221311	Mouse
15039338	Nmrs34_m	NAFLD-associated magnetic resonance shift 34 (mouse)					13	221311	34221311	Mouse
1301455	Bmd3_m	bone mineral density 3 (mouse)			Not determined		13	3477612	37477820	Mouse
10045624	Heal24_m	wound healing/regeneration (mouse)			Not determined		13	3477612	37477820	Mouse
10045625	Heal23_m	wound healing/regeneration 23 (mouse)			Not determined		13	3477612	37477820	Mouse
1301367	Twq1_m	testis weight QTL 1 (mouse)			Not determined		13	3615512	37615672	Mouse
1301733	Heal3_m	wound healing/regeneration 3 (mouse)			Not determined		13	3680200	37680343	Mouse
26884393	Humsd7_m	humerus midshaft diameter 7, 16 week (mouse)					13	3950000	76048119	Mouse
1558898	Hpi1_m	hapatic PMN infiltration 1 (mouse)			Not determined		13	4414025	53101640	Mouse
10402494	Igmsc1_m	immunoglobulin M secreting cells 1 (mouse)			Not determined		13	17168545	44918560	Mouse
1301984	Pbd2_m	peak bone density 2 (mouse)			Not determined		13	17189508	38947406	Mouse
1301880	Hypt_m	hypertension (mouse)			Not determined		13	18156792	52156924	Mouse
13463469	Gssq1_m	glomerulosclerosis severity QTL 1 (mouse)					13	19060908	53061050	Mouse
12880423	V25Dq7_m	vitamin D inactive form serum level QTL 7 (mouse)					13	19583983	53583983	Mouse
1301015	Sysbp2_m	systolic blood pressure 2 (mouse)			Not determined		13	20477612	59821605	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
1357591	Tesq1_m	testis weight QTL 1 (mouse)			Not determined		13	20615512	55720517	Mouse
4142009	Pregq3_m	pregnancy QTL 3 (mouse)			Not determined		13	20615512	72385189	Mouse
10045618	Heal17_m	wound healing/regeneration 17 (mouse)			Not determined		13	20746939	54747056	Mouse

Markers in Region

UniSTS:487788

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	13	21,754,123 - 21,754,503	UniSTS	GRCm38
MGSCv37	13	21,845,992 - 21,846,372	UniSTS	GRCm37
Celera	13	22,029,612 - 22,029,992	UniSTS
Cytogenetic Map	13	A2-A3	UniSTS

UniSTS:492759

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	13	21,753,395 - 21,753,912	UniSTS	GRCm38
MGSCv37	13	21,845,264 - 21,845,781	UniSTS	GRCm37
Celera	13	22,028,884 - 22,029,401	UniSTS
Cytogenetic Map	13	A2-A3	UniSTS

Hist1h2bc

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	13	A2-A3	UniSTS
Cytogenetic Map	3	F1-F2	UniSTS
Cytogenetic Map	11	B2	UniSTS
Cytogenetic Map	13	A3.1	UniSTS
cM Map	13		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_178201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL589651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY158929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000091709 ⟹ ENSMUSP00000089301

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	21,938,293 - 21,938,673 (+)	Ensembl
GRCm38.p6 Ensembl	13	21,754,123 - 21,754,503 (+)	Ensembl

RefSeq Acc Id:

NM_178201 ⟹ NP_835508

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	21,938,246 - 21,938,723 (+)	NCBI
GRCm38	13	21,754,076 - 21,754,553 (+)	NCBI
MGSCv37	13	21,845,992 - 21,846,372 (+)	RGD
Celera	13	22,029,612 - 22,030,042 (+)	NCBI
cM Map	13		ENTREZGENE

Sequence:

show sequence

ACATTTCTTTTCTTTCTGTATCTTTAGGCTTTTGGTCAGTTCCTACCATGCCTGAACCCGCTAA
GTCCGCTCCCGCCCCGAAGAAGGGGTCCAAGAAGGCCGTCACCAAGGCCCAGAAGAAGGACGGC
AAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGGTGCTGAAGCAAG
TGCACCCCGACACCGGCATCTCCTCCAAGGCCATGGGCATCATGAACTCGTTCGTGAACGACAT
CTTCGAGCGCATCGCGAGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACA
TCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGT
CGGAGGGCACCAAGGCTGTCACCAAGTACACCAGCTCCAAGTGAGTTCCTTTAACTCACACTCC
TAACCCAAAGGCTCTTTTCAGAGCCACCCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_835508	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO06239	(Get FASTA)	NCBI Sequence Viewer
	EDL32631	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000089301
	ENSMUSP00000089301.3
	ENSMUSP00000089350.2
	ENSMUSP00000100738.2
	ENSMUSP00000106082.2
	ENSMUSP00000106093.2
	ENSMUSP00000106095.2
GenBank Protein	P10853	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_835508 ⟸ NM_178201
- UniProtKB:	Q5SZZ3 (UniProtKB/Swiss-Prot), P10853 (UniProtKB/Swiss-Prot), A0JLV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMN SFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK hide sequence

RefSeq Acc Id:

ENSMUSP00000089301 ⟸ ENSMUST00000091709

Protein Domains

Histone H2A/H2B/H3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P10853-F1-model_v2	AlphaFold	P10853	1-126	view protein structure

Promoters

RGD ID:

8679730

Promoter ID:

EPDNEW_M17895

Type:

initiation region

Name:

Hist1h2bn_1

Description:

Mus musculus histone cluster 1, H2bn , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	21,754,076 - 21,754,136	EPDNEW

RGD ID:

6824032

Promoter ID:

MM_KWN:13398

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000110475, NM_178183, NM_178201

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	13	21,844,436 - 21,846,732 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2448407	AgrOrtholog
Ensembl Genes	ENSMUSG00000069268	UniProtKB/Swiss-Prot
	ENSMUSG00000069300	UniProtKB/Swiss-Prot
	ENSMUSG00000069303	UniProtKB/Swiss-Prot
	ENSMUSG00000069307	UniProtKB/Swiss-Prot
	ENSMUSG00000094338	UniProtKB/Swiss-Prot
	ENSMUSG00000095217	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000091709	ENTREZGENE
	ENSMUST00000091709.3	UniProtKB/Swiss-Prot
	ENSMUST00000091756.2	UniProtKB/Swiss-Prot
	ENSMUST00000105106.2	UniProtKB/Swiss-Prot
	ENSMUST00000110452.2	UniProtKB/Swiss-Prot
	ENSMUST00000110467.2	UniProtKB/Swiss-Prot
	ENSMUST00000110469.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.20.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Histone-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Histone_H2A/H2B/H3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Histone_H2B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:319180	UniProtKB/Swiss-Prot
	mmu:319183	UniProtKB/Swiss-Prot
	mmu:319185	UniProtKB/Swiss-Prot
	mmu:319187	UniProtKB/Swiss-Prot
	mmu:665596	UniProtKB/Swiss-Prot
	mmu:665622	UniProtKB/Swiss-Prot
MGD	MGI:2448407	ENTREZGENE
NCBI Gene	319187	ENTREZGENE
PANTHER	HISTONE H2B	UniProtKB/TrEMBL
	HISTONE H2B TYPE 1-L	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23428	UniProtKB/Swiss-Prot
Pfam	Histone	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	H2bc15	PhenoGen
PRINTS	HISTONEH2B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	HISTONE_H2B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	H2B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Histone-fold	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A0JLV3	ENTREZGENE, UniProtKB/TrEMBL
	H2B1F_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5SZZ3	ENTREZGENE
UniProt Secondary	Q5SZZ3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-13	H2bc15	H2B clustered histone 15	Hist1h2bn	histone cluster 1, H2bn	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)