Fermt2 (fermitin family member 2) - Rat Genome Database

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Pathways
Gene: Fermt2 (fermitin family member 2) Mus musculus
Analyze
Symbol: Fermt2
Name: fermitin family member 2
RGD ID: 1323442
MGI Page MGI
Description: Enables actin filament binding activity. Involved in several processes, including focal adhesion assembly; integrin activation; and positive regulation of osteoblast differentiation. Located in stress fiber. Is expressed in several structures, including brain ventricular layer; genitourinary system; gut; immune system; and musculature. Orthologous to human FERMT2 (FERM domain containing kindlin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA960555; fermitin family homolog 2; Kind; Kindlin-2; MGC36305; Mig; Mig2; mitogen inducible 2; pleckstrin homology domain containing, family C (with FERM domain) member 1; pleckstrin homology domain-containing family C member 1; Plekh; Plekhc1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,696,249 - 45,767,767 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,696,252 - 45,767,575 (-)EnsemblGRCm39 Ensembl
GRCm381445,458,792 - 45,530,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,458,795 - 45,530,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv371446,078,467 - 46,149,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361444,380,669 - 44,451,942 (-)NCBIMGSCv36mm8
Celera1441,642,480 - 41,713,283 (-)NCBICelera
Cytogenetic Map14C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
daidzein  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (EXP,ISO)
diuron  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenthion  (EXP)
fipronil  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glafenine  (ISO)
inulin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phytoestrogen  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
quercetin  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
staurosporine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (EXP,ISO)
vincristine  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cell adhesion  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal embryonic epiblast morphology  (IAGP)
abnormal germ layer development  (IAGP)
abnormal intramembranous bone ossification  (IAGP)
abnormal limb development  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone epiphyseal plate proliferative zone  (IAGP)
abnormal long bone hypertrophic chondrocyte zone  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal sternum morphology  (IAGP)
absent neurocranium  (IAGP)
brachydactyly  (IAGP)
brachyphalangia  (IAGP)
chondrodystrophy  (IAGP)
clavicle hypoplasia  (IAGP)
decreased body size  (IAGP)
decreased bone mineral density  (IAGP)
decreased chondrocyte number  (IAGP)
decreased chondrocyte proliferation  (IAGP)
decreased femur compact bone thickness  (IAGP)
decreased length of long bones  (IAGP)
decreased trabecular bone volume  (IAGP)
delayed endochondral bone ossification  (IAGP)
disorganized long bone epiphyseal plate  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
hematoma  (IAGP)
increased chondrocyte apoptosis  (IAGP)
kyphosis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
respiratory distress  (IAGP)
short femur  (IAGP)
short humerus  (IAGP)
short limbs  (IAGP)
short radius  (IAGP)
short scapula  (IAGP)
short sternum  (IAGP)
short tibia  (IAGP)
short ulna  (IAGP)
small clavicle  (IAGP)
small thoracic cage  (IAGP)
small vertebrae  (IAGP)
sternebra fusion  (IAGP)
vertebral compression  (IAGP)
wide sternum  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Talins and kindlins: partners in integrin-mediated adhesion. Calderwood DA, etal., Nat Rev Mol Cell Biol. 2013 Aug;14(8):503-17. doi: 10.1038/nrm3624. Epub 2013 Jul 17.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. [Expression of Kindlins and angiopoietins in acute myeloid leukemia]. Wu WB, etal., Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2012 Feb;20(1):7-11.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11239426   PMID:11544199   PMID:11812828   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:14610273   PMID:14651920   PMID:14691545   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16876785   PMID:17967808   PMID:18174465   PMID:18483218   PMID:18554416  
PMID:18611274   PMID:18799693   PMID:20861856   PMID:21267068   PMID:21378273   PMID:21590706   PMID:21677750   PMID:21873635   PMID:21947080   PMID:22561348   PMID:22795696   PMID:23723426  
PMID:23896409   PMID:24165133   PMID:24226523   PMID:24457600   PMID:25237194   PMID:25587038   PMID:25633062   PMID:25724625   PMID:25808491   PMID:26143257   PMID:26151572   PMID:26821125  
PMID:27044892   PMID:27502369   PMID:27722852   PMID:27889896   PMID:28408404   PMID:28775002   PMID:28799653   PMID:28912124   PMID:29162887   PMID:29434030   PMID:29496737   PMID:29743493  
PMID:30070977   PMID:30333137   PMID:30389854   PMID:30783087   PMID:30883226   PMID:31292295   PMID:31767831   PMID:31825843   PMID:31980627   PMID:32325033   PMID:32483447   PMID:32603328  
PMID:32954626   PMID:33359386   PMID:33361757   PMID:33761308   PMID:33767359   PMID:34117213   PMID:34338144   PMID:35567938   PMID:35595729   PMID:35622133   PMID:35788130   PMID:36241227  
PMID:36417873   PMID:36622102   PMID:37117739  


Genomics

Comparative Map Data
Fermt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,696,249 - 45,767,767 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,696,252 - 45,767,575 (-)EnsemblGRCm39 Ensembl
GRCm381445,458,792 - 45,530,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,458,795 - 45,530,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv371446,078,467 - 46,149,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361444,380,669 - 44,451,942 (-)NCBIMGSCv36mm8
Celera1441,642,480 - 41,713,283 (-)NCBICelera
Cytogenetic Map14C1NCBI
FERMT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381452,857,273 - 52,951,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1452,857,268 - 52,952,435 (-)EnsemblGRCh38hg38GRCh38
GRCh371453,323,991 - 53,417,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361452,393,743 - 52,487,460 (-)NCBINCBI36Build 36hg18NCBI36
Build 341452,393,742 - 52,487,460NCBI
Celera1433,373,704 - 33,467,553 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1433,486,674 - 33,581,054 (-)NCBIHuRef
CHM1_11453,262,863 - 53,356,715 (-)NCBICHM1_1
T2T-CHM13v2.01447,065,165 - 47,158,990 (-)NCBIT2T-CHM13v2.0
Fermt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21518,682,927 - 18,751,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,682,927 - 18,751,811 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1521,475,374 - 21,544,137 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01522,432,342 - 22,501,106 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01520,688,917 - 20,757,681 (-)NCBIRnor_WKY
Rnor_6.01519,807,806 - 19,876,557 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,807,808 - 19,876,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01523,771,816 - 23,840,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41521,358,411 - 21,427,264 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11521,358,412 - 21,427,264 (-)NCBI
Celera1519,110,289 - 19,178,605 (-)NCBICelera
Cytogenetic Map15p14NCBI
Fermt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,285,793 - 10,327,468 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,285,780 - 10,327,286 (+)NCBIChiLan1.0ChiLan1.0
FERMT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11453,205,000 - 53,298,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01433,453,983 - 33,547,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,737,188 - 51,830,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,737,188 - 51,829,766 (-)Ensemblpanpan1.1panPan2
FERMT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1829,083,538 - 29,135,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl829,084,531 - 29,133,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha828,829,003 - 28,907,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0829,250,020 - 29,326,046 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl829,250,010 - 29,395,871 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1828,924,206 - 29,004,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0828,996,473 - 29,076,651 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0829,325,136 - 29,405,152 (-)NCBIUU_Cfam_GSD_1.0
Fermt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,153,793 - 76,234,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366971,927,812 - 2,008,268 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366971,927,817 - 2,008,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FERMT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1182,519,684 - 182,606,869 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11182,519,681 - 182,606,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21202,790,224 - 202,816,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FERMT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,954,706 - 30,053,012 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605318,220,669 - 18,321,976 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fermt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,168,207 - 16,246,778 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473116,168,179 - 16,247,747 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fermt2
2169 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:752
Count of miRNA genes:509
Interacting mature miRNAs:574
Transcripts:ENSMUST00000045905, ENSMUST00000141424, ENSMUST00000149723, ENSMUST00000150660
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse

Markers in Region
Plekhc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14C1UniSTS
cM Map14 UniSTS
AA960555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381445,458,927 - 45,459,023UniSTSGRCm38
MGSCv371446,078,602 - 46,078,698UniSTSGRCm37
Celera1441,642,615 - 41,642,711UniSTS
Cytogenetic Map14C1UniSTS
Whitehead/MRC_RH14520.41UniSTS
Plekhc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB669826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ179963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU925369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY241982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY301704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD550909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN716799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX201801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX242997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02000532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000045905   ⟹   ENSMUSP00000044554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,696,252 - 45,767,575 (-)Ensembl
GRCm38.p6 Ensembl1445,458,795 - 45,530,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141424   ⟹   ENSMUSP00000118214
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,706,771 - 45,715,318 (-)Ensembl
GRCm38.p6 Ensembl1445,469,314 - 45,477,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149723   ⟹   ENSMUSP00000153760
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,742,129 - 45,767,243 (-)Ensembl
GRCm38.p6 Ensembl1445,504,672 - 45,529,786 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150660   ⟹   ENSMUSP00000120918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,713,355 - 45,767,421 (-)Ensembl
GRCm38.p6 Ensembl1445,475,898 - 45,529,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228208
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,719,972 - 45,756,397 (-)Ensembl
GRCm38.p6 Ensembl1445,482,515 - 45,518,940 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1445,719,974 - 45,721,426 (-)Ensembl
GRCm38.p6 Ensembl1445,482,517 - 45,483,969 (-)Ensembl
RefSeq Acc Id: NM_001360525   ⟹   NP_001347454
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,249 - 45,767,522 (-)NCBI
GRCm381445,458,792 - 45,530,065 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360526   ⟹   NP_001347455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,249 - 45,767,522 (-)NCBI
GRCm381445,458,792 - 45,530,065 (-)NCBI
Sequence:
RefSeq Acc Id: NM_146054   ⟹   NP_666166
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,249 - 45,767,522 (-)NCBI
GRCm381445,458,792 - 45,530,065 (-)NCBI
MGSCv371446,078,467 - 46,149,740 (-)RGD
Celera1441,642,480 - 41,713,283 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518826   ⟹   XP_006518889
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,252 - 45,767,767 (-)NCBI
GRCm381445,458,795 - 45,530,310 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158557   ⟹   XP_036014450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,252 - 45,767,767 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158558   ⟹   XP_036014451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391445,696,252 - 45,767,767 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_666166   ⟸   NM_146054
- Peptide Label: isoform 3
- UniProtKB: Q8K035 (UniProtKB/Swiss-Prot),   Q8CIB5 (UniProtKB/Swiss-Prot),   Q3TLE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518889   ⟸   XM_006518826
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001347455   ⟸   NM_001360526
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001347454   ⟸   NM_001360525
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000120918   ⟸   ENSMUST00000150660
RefSeq Acc Id: ENSMUSP00000044554   ⟸   ENSMUST00000045905
RefSeq Acc Id: ENSMUSP00000153760   ⟸   ENSMUST00000149723
RefSeq Acc Id: ENSMUSP00000118214   ⟸   ENSMUST00000141424
RefSeq Acc Id: XP_036014451   ⟸   XM_036158558
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036014450   ⟸   XM_036158557
- Peptide Label: isoform X1
Protein Domains
Band 4.1   FERM   FERM central   Kindlin-2 N-terminal   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CIB5-F1-model_v2 AlphaFold Q8CIB5 1-680 view protein structure

Promoters
RGD ID:8682038
Promoter ID:EPDNEW_M19050
Type:initiation region
Name:Fermt2_1
Description:Mus musculus fermitin family member 2 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381445,529,997 - 45,530,057EPDNEW
RGD ID:6824934
Promoter ID:MM_KWN:16422
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000064551
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361446,097,341 - 46,098,532 (-)MPROMDB
RGD ID:6824932
Promoter ID:MM_KWN:16424
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000045905,   ENSMUST00000116488,   OTTMUST00000064549,   OTTMUST00000064550
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361446,149,151 - 46,150,602 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385001 AgrOrtholog
Ensembl Genes ENSMUSG00000037712 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044554 ENTREZGENE
  ENSMUSP00000044554.7 UniProtKB/Swiss-Prot
  ENSMUSP00000118214.2 UniProtKB/TrEMBL
  ENSMUSP00000120918.2 UniProtKB/TrEMBL
  ENSMUSP00000153760.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045905 ENTREZGENE
  ENSMUST00000045905.15 UniProtKB/Swiss-Prot
  ENSMUST00000141424.2 UniProtKB/TrEMBL
  ENSMUST00000149723.2 UniProtKB/TrEMBL
  ENSMUST00000150660.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin/fermitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin_2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_Kindlin/fermitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:218952 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2385001 ENTREZGENE
NCBI Gene 218952 ENTREZGENE
PANTHER FERMITIN FAMILY HOMOLOG 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FERM_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin_2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fermt2 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART B41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BPQ7_MOUSE UniProtKB/TrEMBL
  A6X940_MOUSE UniProtKB/TrEMBL
  A6X941_MOUSE UniProtKB/TrEMBL
  FERM2_MOUSE UniProtKB/Swiss-Prot
  Q3TLE2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UMA4_MOUSE UniProtKB/TrEMBL
  Q8CIB5 ENTREZGENE
  Q8K035 ENTREZGENE
UniProt Secondary Q8C542 UniProtKB/Swiss-Prot
  Q8K035 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Fermt2  fermitin family member 2    fermitin family homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED