Hpf1 (histone PARylation factor 1)

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Gene: Hpf1 (histone PARylation factor 1) Mus musculus

Analyze

Symbol:

Hpf1

Name:

histone PARylation factor 1

RGD ID:

1323364

MGI Page

MGI

Description:

Predicted to have histone binding activity; poly-ADP-D-ribose binding activity; and zinc ion binding activity. Predicted to be involved in cellular response to DNA damage stimulus; peptidyl-serine ADP-ribosylation; and regulation of protein ADP-ribosylation. Predicted to localize to nucleus. Orthologous to human HPF1 (histone PARylation factor 1); INTERACTS WITH crocidolite asbestos; ethanol; tetrachloromethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2700029M09Rik; C230006B22Rik; C4orf27; hypothetical protein LOC72612; RIKEN cDNA 2700029M09 gene; UPF0609 protein C4orf27 homolog

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HPF1 (histone PARylation factor 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Hpf1 (histone PARylation factor 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	LOC102030373 (chromosome unknown open reading frame, human C4orf27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100991754 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HPF1 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101970824 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC100158040 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LOC103236518 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	LOC101705414 (histone PARylation factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	HPF1 (histone PARylation factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	CG1218	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	JC8.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	hpf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	61,342,533 - 61,360,615 (+)	NCBI	GRCm39		mm39
GRCm38	8	60,890,392 - 60,907,580 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	60,890,418 - 60,908,671 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	63,369,248 - 63,386,369 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	63,648,378 - 63,799,724 (+)	NCBI			mm8
Celera	8	63,457,542 - 63,474,667 (+)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

ethanol (EXP)

finasteride (ISO)

flutamide (ISO)

potassium chromate (ISO)

quercetin (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to DNA damage stimulus (IBA,ISO)

peptidyl-serine ADP-ribosylation (IBA,ISO)

regulation of protein ADP-ribosylation (IBA,ISO)

Cellular Component

nucleus (IBA,ISO)

Molecular Function

histone binding (IBA,ISO)

poly-ADP-D-ribose binding (IBA)

protein binding (ISO)

zinc ion binding (IBA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal autopod morphology (IEA)

abnormal circulating alkaline phosphatase level (IEA)

abnormal circulating magnesium level (IEA)

abnormal circulating thyroxine level (IEA)

abnormal red blood cell distribution width (IEA)

decreased grip strength (IEA)

increased red blood cell distribution width (IEA)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073
PMID:21267068	PMID:21873635	PMID:32325033

Genomics

Comparative Map Data

Hpf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	61,342,533 - 61,360,615 (+)	NCBI	GRCm39		mm39
GRCm38	8	60,890,392 - 60,907,580 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	60,890,418 - 60,908,671 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	63,369,248 - 63,386,369 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	63,648,378 - 63,799,724 (+)	NCBI			mm8
Celera	8	63,457,542 - 63,474,667 (+)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI

HPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	169,729,470 - 169,757,944 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	169,729,470 - 169,757,944 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	170,650,619 - 170,679,093 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	170,887,194 - 170,915,668 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	4	167,983,601 - 168,012,093 (-)	NCBI
Cytogenetic Map	4	q33	NCBI
HuRef	4	166,405,437 - 166,433,881 (-)	NCBI		HuRef
CHM1_1	4	170,627,188 - 170,655,678 (-)	NCBI		CHM1_1

Hpf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	32,524,128 - 32,540,233 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	32,519,924 - 32,540,217 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	32,358,968 - 32,375,073 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	32,523,650 - 32,539,537 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	32,523,724 - 32,539,655 (-)	NCBI
Celera	16	29,198,257 - 29,214,140 (-)	NCBI		Celera
Cytogenetic Map	16	p12	NCBI

LOC102030373
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	36,594,269 - 36,622,724 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	36,594,319 - 36,621,020 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100991754
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	174,021,060 - 174,049,213 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	174,021,060 - 174,049,213 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	161,949,343 - 161,977,887 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

HPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	25	20,622,774 - 20,644,822 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	25	20,622,781 - 20,645,459 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

LOC101970824
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936516	1,763,935 - 1,785,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100158040
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	19,997,954 - 20,039,356 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	20,014,254 - 20,037,791 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	21,313,121 - 21,329,267 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103236518
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	115,934,687 - 115,966,404 (-)	NCBI
ChlSab1.1 Ensembl	7	115,934,692 - 115,966,369 (-)	Ensembl

LOC101705414
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	1,239,399 - 1,261,770 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1301936	Trigq2_m	triglyceride QTL 2 (mouse)			Not determined		8	33837362	67837502	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	556
Count of miRNA genes:	312
Interacting mature miRNAs:	339
Transcripts:	ENSMUST00000037190, ENSMUST00000134886, ENSMUST00000136098, ENSMUST00000146863, ENSMUST00000149267
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001379027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001379028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_151662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036154311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036154312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_378914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC154909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB776576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC042740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ075373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000037190 ⟹ ENSMUSP00000047235

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,890,451 - 60,907,580 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134886

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,890,489 - 60,897,048 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000136098 ⟹ ENSMUSP00000119448

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,890,451 - 60,905,985 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000146863 ⟹ ENSMUSP00000117164

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,890,418 - 60,907,575 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000149267 ⟹ ENSMUSP00000118277

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,890,445 - 60,907,573 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000209553

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,905,079 - 60,906,660 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000211016

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	60,906,031 - 60,908,671 (+)	Ensembl

RefSeq Acc Id:

NM_001379027 ⟹ NP_001365956

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NM_001379028 ⟹ NP_001365957

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NM_028299 ⟹ NP_082575

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI
MGSCv37	8	63,369,248 - 63,386,369 (+)	RGD
Celera	8	63,457,542 - 63,474,667 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GGCAGCTCGGATTGGCGGCTTTTGAACCCGGAAGCACTAGCGGGCGCTCGGAAGCGGCAGGAGC
GCGGGCCTTGGCTCGCTCGCTGCGGCTGCGGGATGGTTGGCGGTGGCGGGAAGCGCCGGACGGC
CGGGGCGGGACCGCAGTGTGAAAAGACAGTTGAGGTGAAGAAGAGTAAGTTTTCTGAGGCTGAT
GTCTCCAGTGACCTTCGAAAAGAAGTGGAAAATCTTTATAAGCTTTCACTGCCTGAAGATTTCT
ATCATTTCTGGAAGTTCTGTGAAGAGCTTGATCCTGAAAAGCCAGCTGATGCGCTTGCCACAAG
CCTGGGTCTTCGGTTAGTGGGTCCTTATGATATCCTTGCTGGGAAACATAAAATGAAGAAAAAA
CCCACAGGCTTGAACTGTAATCTTCACTGGAGGTTTTACTATGACCCTCCTGAGTTCCAGACCA
TTATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAACT
TCCTGTATACGTGGGTACAAATGAAGCAAAGAAAAATTGTATAATTATTCAAAATGGAGACAAT
GTGTTTGCTGCCATCAAATTATTTTTAATGAAAAAACTCAAAGAAGTAACAGATAGAAAGAAAA
TTAGCATTTTGAAAAACATAGATGAAAAACTCACAGAAGCAGCCAGAAAACTAGGATACTCACT
GGAACAGAGAACCGTGAAGATGAGACAGAGAGATAAGAAGGTTGTGACAAAGACTTTTCATGGT
GCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGTTACCGAGAGCTCCCTGAAACAGATG
CTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGACGAGGAGAGACTGAAAGC
ATTCGCTCCCATTCAGGAGATGATGACTTTTGTGCAGTTTGCTAATGATGAGTGTGATTATGGC
ATGGGGCTGGAATTAGGAATGGACCTCTTTTGCTATGGCTCTCATTATTTTCACAAAGTTGCTG
GTCAGCTTTTACCTCTTGCGTATAATCTATTGAAGAGGGATCTGTTTGCAAAAATTATTGAAGA
TCATCTGGCAAGCAGAAGTGAAGAGAACATAGACCAGCTTGCAGGATGAACAAGCTGCCCTGTT
AGTGCAGTGCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAAAT
AATGGGAATTTTATTAAAAACTTTATAATACGGC

hide sequence

RefSeq Acc Id:

NR_151662

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

Sequence:

show sequence

GGCAGCTCGGATTGGCGGCTTTTGAACCCGGAAGCACTAGCGGGCGCTCGGAAGCGGCAGGAGC
GCGGGCCTTGGCTCGCTCGCTGCGGCTGCGGGATGGTTGGCGGTGGCGGGAAGCGCCGGACGGC
CGGGGCGGGACCGCAGCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGACG
AGGAGAGACTGAAAGCATTCGCTCCCATTCAGGAGATGATGACTTTTGTGCAGTTTGCTAATGA
TGAGTGTGATTATGGCATGGGGCTGGAATTAGGAATGGACCTCTTTTGCTATGGCTCTCATTAT
TTTCACAAAGTTGCTGGTCAGCTTTTACCTCTTGCGTATAATCTATTGAAGAGGGATCTGTTTG
CAAAAATTATTGAAGATCATCTGGCAAGCAGAAGTGAAGAGAACATAGACCAGCTTGCAGGATG
AACAAGCTGCCCTGTTAGTGCAGTGCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAG
GAATGGAGAAATAAATAATGGGAATTTTATTAAAAACTTTATAATACGGC

hide sequence

RefSeq Acc Id:

NR_166421

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166422

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166424

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166425

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166426

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166427

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166428

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

NR_166429

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,343,462 - 61,360,614 (+)	NCBI
GRCm38	8	60,890,428 - 60,907,580 (+)	NCBI

RefSeq Acc Id:

XM_006509510 ⟹ XP_006509573

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,342,533 - 61,360,038 (+)	NCBI
GRCm38	8	60,890,392 - 60,907,004 (+)	NCBI

Sequence:

show sequence

CGGCAGCTCGGATTGGCGGCTTTTGAACCCGGAAGCACTAGCGGGCGCTCGGAAGCGGCAGGAG
CGCGGGCCTTGGCTCGCTCGCTGCGGCTGCGGGATGGTTGGCGGTGGCGGGAAGCGCCGGACGG
CCGGGGCGGGACCGCAGTGTGAAAAGACAGTTGAGGTGAAGAAGAGTAAGTTTTCTGAGGCTGA
TGTCTCCAGTGACCTTCGAAAAGAAGTGGAAAATCTTTATAAGCTTTCACTGCCTGAAGATTTC
TATCATTTCTGGAAGTTCTGTGAAGAGCTTGATCCTGAAAAGCCAGCTGATGCGCTTGCCACAA
GCCTGGGTCTTCGGTTAGTGGGTCCTTATGATATCCTTGCTGGGAAACATAAAATGAAGAAAAA
ACCCACAGGCTTGAACTGTAATCTTCACTGGAGGTTTTACTATGACCCTCCTGAGTTCCAGACC
ATTATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAAC
TTCCTGTATACGTGGGTACAAATGAAGCAAAGAAAAATTGTATAATTATTCAAAATGGAGACAA
TGTGTTTGCTGCCATCAAATTATTTTTAATGAAAAAACTCAAAGAAGTAACAGATAGAAAGAAA
ATTAGCATTTTGAAAAACATAGATGAAAAACTCACAGAAGCAGCCAGAAAACTAGGATACTCAC
TGGAACAGAGAACCGTGAAGATGAGACAGAGAGATAAGAAGGTTGTGACAAAGACTTTTCATGG
TGCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGTTACCGAGAGCTCCCTGAAACAGAT
GGTAATGTGTTCCCTGTGGAAATATGTGCATCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCG
ACGCTGCAAGCGACGAGGAGAGACTGAAAGCATTCGCTCCCATTCAGGAGATGATGACTTTTGT
GCAGTTTGCTAATGATGAGTGTGATTATGGCATGGGGCTGGAATTAGGAATGGACCTCTTTTGC
TATGGCTCTCATGTGAGTAAAGCTCCTCCTTCTGCAGTACTGAATACACAAACTCACGGTTACT
TATCTTCTCAACTCCAGCTGCCGAGGGGGGGATCCAGCTCCTATTTCCAAACCTTTGGAAGTGA
TTTGAAAGTAAAAGTTCTAAAACGATTTGAAATCTTATATTGAGGCAAAGGTGAATAAGCAGAA
TTACTTCCTCAATGTCATATTGAACTCAGCTTGTGTATCGGTATCTCGGGGGCGCCATCTTTGC
GGGGTCTGGATAGGCTTGTGGATATGGATGTGGAAATGTATATGCCCCTTTCTTTTGTTTTTTT
TTGGGGTGGGTGTCATCTACTACCACGTCTTAAATACTGTTTTCAAGTATTTTAATTAAAATAT
TGGAGCTAGTAGTCTATCATTGACCCTTTCCCACCTGTAAAATTGCCTTCTCATGGGCACATGC
ATGCTCCTCACTGTACCTTTGGTAAGCCACTGCTAGGGCACCATCTCCAGGCTCCCAATGGCAG
CCCCATTCCAGTGTCTAAGTAAAGGATTCACAAACTGCAGATGCTTGGGAGCCACCGTAGTTAG
TATTAATGCAAACTATATGAGTAGGTCAGAGGTGTGGCCCTGCTGTCATTAACATTGCCATGTG
GCAAGAATGCCACCACTTTATAGACTATCCTGAGGAGCAAGACTAAGCCAGCATGCATCAGTCA
TCCAGACGAGACGGCTTTGATCACAGGTTAGTGTTTCCTTGTCCCCCACTTTGAATTACAGGGT
GGTTCCTGACAAACTGATCCGACTGGTCAAGAACCCTGACTGAGACCCCTGTTTAAAGCATCAT
ATGGCCCCTTTCTTCCTGGCTTCTAGTTATCAGTAAAAAGTGTCCAAAGTGTTACACAAGCAGA
ATGATATAGTTGTCACAAAGGACCTAACCATAAATGCCATTGATGAAGTAGGTATTAAAAAAAA
AAAATTACATGAGAAATGAAAAGATGTGGTACACTGAATACGTGCTTAAATAAATGCTAGTTCT
CACAAAAGAATGTTACCGGGTTTCCTGCTAGGGTGTATGTAAAAGCAATGCTGTGAAACCATTC
AGTAAACCTGAGCCTGAACTCTAAGCAGGAAAGAAATGCTTACATGGTAGAGAATGAGCTGAGA
CTAAAGGGGAGGAGCTGGAGAGATGGCTCCGTGGGGTAGAACACCCAGAGGGACCCAGTTCTAT
TATAAGCATCCACAGGCACTCACAAGTCAAATATGTGGTGCACATTTAGGTAAAAGACATATGT
AAAATTGTTTAAAAAA

hide sequence

RefSeq Acc Id:

XM_006509512 ⟹ XP_006509575

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,342,533 - 61,360,606 (+)	NCBI
GRCm38	8	60,890,395 - 60,907,580 (+)	NCBI

Sequence:

show sequence

CAGCTCGGATTGGCGGCTTTTGAACCCGGAAGCACTAGCGGGCGCTCGGAAGCGGCAGGAGCGC
GGGCCTTGGCTCGCTCGCTGCGGCTGCGGGATGGTTGGCGGTGGCGGGAAGCGCCGGACGGCCG
GGGCGGGACCGCAGTGTGAAAAGACAGTTGAGGTGAAGAAGAGTAAGTTTTCTGAGGCTGATGT
CTCCAGTGACCTTCGAAAAGAAGTGGAAAATCTTTATAAGCTTTCACTGCCTGAAGATTTCTAT
CATTTCTGGAAGTTCTGTGAAGAGCTTGATCCTGAAAAGCCAGCTGATGCGCTTGCCACAAGCC
TGGGTCTTCGGTTAGTGGGTCCTTATGATATCCTTGCTGGGAAACATAAAATGAAGAAAAAACC
CACAGGCTTGAACTGTAATCTTCACTGGAGGTTTTACTATGACCCTCCTGAGTTCCAGACCATT
ATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAACTTC
CTGTATACGTGGGTACAAATGAAGCAAAGAAAAATTGTATAATTATTCAAAATGGAGACAATGT
GTTTGCTGCCATCAAATTATTTTTAATGAAAAAACTCAAAGAAGTAACAGATAGAAAGAAAATT
AGCATTTTGAAAAACATAGATGAAAAACTCACAGAAGCAGCCAGAAAACTAGGATACTCACTGG
AACAGAGAACCGTGAAGATGAGACAGAGAGATAAGAAGGTTGTGACAAAGACTTTTCATGGTGC
AGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGTTACCGAGAGCTCCCTGAAACAGATGCT
GACCTTAAGAGAATCTGCAAGGCAGTTGTCGACGCTGCAAGCGACGAGGAGAGACTGAAAGCAT
TCGCTCCCATTCAGGAGATGATGACTTTTGTGCAGTTTGCTAATGATGAGTGTGATTATGGCAT
GGGGCTGGAATTAGGAATGGACCTCTTTTGCTATGGCTCTCATGTGAGTAAAGCTCCTCCTTCT
GCAGTACTGAATACACAAACTCACGGTTACTTATCTTCTCAACTCCAGCTGCCGAGGGGGGGAT
CCAGCTCCTATTTCCAAACCTTTGGAAGTGATTTGAAAGTAAAAGTTCTAAAACGATTTGAAAT
CTTATATTGAGGCAAAGGTGAATAAGCAGAATTACTTCCTCAATGTCATATTGAACTCAGCTTG
TGTATCGGTATCTCGGGGGCGCCATCTTTGCGGGGTCTGGATAGGCTTGTGGATATGGATGTGG
AAATGTATATGCCCCTTTCTTTTGTTTTTTTTTGGGGTGGGTGTCATCTACTACCACGTCTTAA
ATACTGTTTTCAAGTATTTTAATTAAAATATTGGAGCTAGTAGTCTATCATTGACCCTTTCCCA
CCTGTAAAATTGCCTTCTCATGGGCACATGCATGCTCCTCACTGTACCTTTGGTAAGCCACTGC
TAGGGCACCATCTCCAGGCTCCCAATGGCAGCCCCATTCCAGTGTCTAAGTAAAGGATTCACAA
ACTGCAGATGCTTGGGAGCCACCGTAGTTAGTATTAATGCAAACTATATGAGTAGGTCAGAGGT
GTGGCCCTGCTGTCATTAACATTGCCATGTGGCAAGAATGCCACCACTTTATAGACTATCCTGA
GGAGCAAGACTAAGCCAGCATGCATCAGTCATCCAGACGAGACGGCTTTGATCACAGGTTAGTG
TTTCCTTGTCCCCCACTTTGAATTACAGGGTGGTTCCTGACAAACTGATCCGACTGGTCAAGAA
CCCTGACTGAGACCCCTGTTTAAAGCATCATATGGCCCCTTTCTTCCTGGCTTCTAGTTATCAG
TAAAAAGTGTCCAAAGTGTTACACAAGCAGAATGATATAGTTGTCACAAAGGACCTAACCATAA
ATGCCATTGATGAAGTAGGTATTAAAAAAAAAAAATTACATGAGAAATGAAAAGATGTGGTACA
CTGAATACGTGCTTAAATAAATGCTAGTTCTCACAAAAGAATGTTACCGGGTTTCCTGCTAGGG
TGTATGTAAAAGCAATGCTGTGAAACCATTCAGTAAACCTGAGCCTGAACTCTAAGCAGGAAAG
AAATGCTTACATGGTAGAGAATGAGCTGAGACTAAAGGGGAGGAGCTGGAGAGATGGCTCCGTG
GGGTAGAACACCCAGAGGGACCCAGTTCTATTATAAGCATCCACAGGCACTCACAAGTCAAATA
TGTGGTGCACATTTAGGTAAAAGACATATGTAAAATTGTTTAAAAAATGATGAAGAGATTTGTA
ACCTCATATTTGTCATACCTATTACAAGGTCTATTAAAAAGTCTTAACTAATACAAATAGTTAA
GAAGAAAGCATTTAATGGAACTTTGGGACAAAAATGTTGATAAAATTAATGGACCATGAGAAAC
TTCAATTTGTAATGCCTCTGAGCTCCTTTCAGGACTTGGTGAACAGTTGTCTTTAGGGCAGAAG
AGCAGGGACATGGCCCATGTTTAGGGCCAACTGGGTGGACTTTGTTGCACAGGTGTGTTCCCAT
GTATTTTTCAGCTGTACCTGCCATTTTCTCACCCTGATGTTATGTTCTTTGCTTTTTAGTATTT
TCACAAAGTTGCTGGTCAGCTTTTACCTCTTGCGTATAATCTATTGAAGAGGGATCTGTTTGCA
AAAATTATTGAAGATCATCTGGCAAGCAGAAGTGAAGAGAACATAGACCAGCTTGCAGGATGAA
CAAGCTGCCCTGTTAGTGCAGTGCTTTGAAGTGGGACCAGCAGACGGGGCTTTGTTTTTAAGGA
ATGGAGAAATAAATAATGGGAATTTTATTAAAAACTTTATAATACGG

hide sequence

RefSeq Acc Id:

XM_036154311 ⟹ XP_036010204

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,342,533 - 61,360,615 (+)	NCBI

RefSeq Acc Id:

XM_036154312 ⟹ XP_036010205

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,342,533 - 61,360,615 (+)	NCBI

RefSeq Acc Id:

XR_378914

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	61,342,533 - 61,360,615 (+)	NCBI
GRCm38	8	60,890,392 - 60,907,580 (+)	NCBI

Sequence:

show sequence

CGGCAGCTCGGATTGGCGGCTTTTGAACCCGGAAGCACTAGCGGGCGCTCGGAAGCGGCAGGAG
CGCGGGCCTTGGCTCGCTCGCTGCGGCTGCGGGATGGTTGGCGGTGGCGGGAAGCGCCGGACGG
CCGGGGCGGGACCGCAGTGTGAAAAGACAGTTGAGGTGAAGAAGAGTAAGTTTTCTGAGGCTGA
TGTCTCCAGTGACCTTCGAAAAGAAGTGGAAAATCTTTATAAGCTTTCACTGCCTGAAGATTTC
TATCATTTCTGGAAGTTCTGTGAAGAGCTTGATCCTGAAAAGCCAGCTGATGCGCTTGCCACAA
GCCTGGGTCTTCGGTTAGTGGGTCCTTATGATATCCTTGCTGGGAAACATAAAATGAAGAAAAA
ACCCACAGGCTTGAACTGTAATCTTCACTGGAGGTTTTACTATGACCCTCCTGAGTTCCAGACC
ATTATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAAC
TTCCTGTATACGTGGGTACAAATGAAGCAAAGAAAAATTGTATAATTATTCAAAATGGAGACAA
TGTGTTTGCTGCCATCAAATTATTTTTAATGAAAAAACTCAAAGAAGTAACAGATAGAAAGAAA
ATTAGCATTTTGAAAAACATAGATGAAAAACTCACAGAAGCAGCCAGAAAACTAGGATACTCAC
TGGAACAGAGAACCGTGAAGATGAGACAGAGAGATAAGAAGGTTGTGACAAAGACTTTTCATGG
TGCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGTTACCGAGAGCTCCCTGAAACAGAT
GGTAATGTGTTCCCTGTGGAAATATGTGCATCTGACCTTAAGAGAATCTGCAAGGCAGTTGTCG
ACGCTGCAAGCGACGAGGAGAGACTGAAAGCATTCGCTCCCATTCAGGAGATGATGACTTTTGT
GCAGTTTGCTAATGATGAGTGTGATTATGGCATGGGGCTGGAATTAGGAATGGACCTCTTTTGC
TATGGCTCTCATGTGAGTAAAGCTCCTCCTTCTGCAGTACTGAATACACAAACTCACGGTTACT
TATCTTCTCAACTCCAGCTGCCGAGGGGGGGATCCAGCTCCTATTTCCAAACCTTTGGAAGTGA
TTTGAAAGTAAAAGTTCTAAAACGATTTGAAATCTTATATTGAGGCAAAGGTGAATAAGCAGAA
TTACTTCCTCAATGTCATATTGAACTCAGCTTGTGTATCGGTATCTCGGGGGCGCCATCTTTGC
GGGGTCTGGATAGGCTTGTGGATATGGATGTGGAAATGTATATGCCCCTTTCTTTTGTTTTTTT
TTGGGGTGGGTGTCATCTACTACCACGTCTTAAATACTGTTTTCAAGTATTTTAATTAAAATAT
TGGAGCTAGTAGTCTATCATTGACCCTTTCCCACCTGTAAAATTGCCTTCTCATGGGCACATGC
ATGCTCCTCACTGTACCTTTGGTAAGCCACTGCTAGGGCACCATCTCCAGGCTCCCAATGGCAG
CCCCATTCCAGTGTCTAAGTAAAGGATTCACAAACTGCAGATGCTTGGGAGCCACCGTAGTTAG
TATTAATGCAAACTATATGAGTAGGTCAGAGGTGTGGCCCTGCTGTCATTAACATTGCCATGTG
GCAAGAATGCCACCACTTTATAGACTATCCTGAGGAGCAAGACTAAGCCAGCATGCATCAGTCA
TCCAGACGAGACGGCTTTGATCACAGTATTTTCACAAAGTTGCTGGTCAGCTTTTACCTCTTGC
GTATAATCTATTGAAGAGGGATCTGTTTGCAAAAATTATTGAAGATCATCTGGCAAGCAGAAGT
GAAGAGAACATAGACCAGCTTGCAGGATGAACAAGCTGCCCTGTTAGTGCAGTGCTTTGAAGTG
GGACCAGCAGACGGGGCTTTGTTTTTAAGGAATGGAGAAATAAATAATGGGAATTTTATTAAAA
ACTTTATAATACGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001365956	(Get FASTA)	NCBI Sequence Viewer
	NP_001365957	(Get FASTA)	NCBI Sequence Viewer
	NP_082575	(Get FASTA)	NCBI Sequence Viewer
	XP_006509573	(Get FASTA)	NCBI Sequence Viewer
	XP_006509575	(Get FASTA)	NCBI Sequence Viewer
	XP_036010204	(Get FASTA)	NCBI Sequence Viewer
	XP_036010205	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH42740	(Get FASTA)	NCBI Sequence Viewer
	BAE29573	(Get FASTA)	NCBI Sequence Viewer
	BAE34015	(Get FASTA)	NCBI Sequence Viewer
	Q8CFE2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_082575 ⟸ NM_028299
- Peptide Label:	isoform 1
- UniProtKB:	Q8CFE2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVGGGGKRRTAGAGPQCEKTVEVKKSKFSEADVSSDLRKEVENLYKLSLPEDFYHFWKFCEELD PEKPADALATSLGLRLVGPYDILAGKHKMKKKPTGLNCNLHWRFYYDPPEFQTIIIGDNKTQYH MGYFRDSPDELPVYVGTNEAKKNCIIIQNGDNVFAAIKLFLMKKLKEVTDRKKISILKNIDEKL TEAARKLGYSLEQRTVKMRQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKAVV DAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLL KRDLFAKIIEDHLASRSEENIDQLAG hide sequence

RefSeq Acc Id:

XP_006509573 ⟸ XM_006509510

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVGGGGKRRTAGAGPQCEKTVEVKKSKFSEADVSSDLRKEVENLYKLSLPEDFYHFWKFCEELD
PEKPADALATSLGLRLVGPYDILAGKHKMKKKPTGLNCNLHWRFYYDPPEFQTIIIGDNKTQYH
MGYFRDSPDELPVYVGTNEAKKNCIIIQNGDNVFAAIKLFLMKKLKEVTDRKKISILKNIDEKL
TEAARKLGYSLEQRTVKMRQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDGNVFPVEICAS
DLKRICKAVVDAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHVSKAPPS
AVLNTQTHGYLSSQLQLPRGGSSSYFQTFGSDLKVKVLKRFEILY

hide sequence

RefSeq Acc Id:

XP_006509575 ⟸ XM_006509512

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVGGGGKRRTAGAGPQCEKTVEVKKSKFSEADVSSDLRKEVENLYKLSLPEDFYHFWKFCEELD
PEKPADALATSLGLRLVGPYDILAGKHKMKKKPTGLNCNLHWRFYYDPPEFQTIIIGDNKTQYH
MGYFRDSPDELPVYVGTNEAKKNCIIIQNGDNVFAAIKLFLMKKLKEVTDRKKISILKNIDEKL
TEAARKLGYSLEQRTVKMRQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKAVV
DAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHVSKAPPSAVLNTQTHGY
LSSQLQLPRGGSSSYFQTFGSDLKVKVLKRFEILY

hide sequence

RefSeq Acc Id:	NP_001365956 ⟸ NM_001379027
- Peptide Label:	isoform 3

RefSeq Acc Id:	NP_001365957 ⟸ NM_001379028
- Peptide Label:	isoform 4

RefSeq Acc Id:

ENSMUSP00000117164 ⟸ ENSMUST00000146863

RefSeq Acc Id:

ENSMUSP00000118277 ⟸ ENSMUST00000149267

RefSeq Acc Id:

ENSMUSP00000047235 ⟸ ENSMUST00000037190

RefSeq Acc Id:

ENSMUSP00000119448 ⟸ ENSMUST00000136098

RefSeq Acc Id:	XP_036010205 ⟸ XM_036154312
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_036010204 ⟸ XM_036154311
- Peptide Label:	isoform X3

Promoters

RGD ID:

8667137

Promoter ID:

EPDNEW_M11600

Type:

initiation region

Name:

Hpf1_1

Description:

Mus musculus histone PARylation factor 1 , transcript variant2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	60,890,428 - 60,890,488	EPDNEW

RGD ID:

6842513

Promoter ID:

MM_KWN:54488

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000077801, OTTMUST00000077803, OTTMUST00000077804, OTTMUST00000077805, UC009LTJ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	63,368,936 - 63,369,436 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1919862	AgrOrtholog
Ensembl Genes	ENSMUSG00000038005	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000047235	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000117164	UniProtKB/TrEMBL
	ENSMUSP00000118277	UniProtKB/TrEMBL
	ENSMUSP00000119448	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000037190	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000136098	UniProtKB/TrEMBL
	ENSMUST00000146863	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000149267	UniProtKB/TrEMBL
InterPro	HPF1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:72612	UniProtKB/Swiss-Prot
MGD	MGI:1919862	ENTREZGENE
NCBI Gene	72612	ENTREZGENE
PANTHER	PTHR13386	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF2228	UniProtKB/Swiss-Prot
PhenoGen	Hpf1	PhenoGen
UniGene	Mm.25263	ENTREZGENE
UniProt	D6RFB7_MOUSE	UniProtKB/TrEMBL
	D6RIJ8_MOUSE	UniProtKB/TrEMBL
	HPF1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-31	Hpf1	histone PARylation factor 1	2700029M09Rik	RIKEN cDNA 2700029M09 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)