Cd2bp2 (CD2 cytoplasmic tail binding protein 2) - Rat Genome Database

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Gene: Cd2bp2 (CD2 cytoplasmic tail binding protein 2) Mus musculus
Analyze
Symbol: Cd2bp2
Name: CD2 cytoplasmic tail binding protein 2
RGD ID: 1323356
MGI Page MGI
Description: Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be part of U5 snRNP. Predicted to colocalize with nuclear speck. Is expressed in several structures, including adrenal gland; central nervous system; genitourinary system; immune system; and lung. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500011B02Rik; 2410024K20Rik; AW048183; CD2 antigen (cytoplasmic tail) binding protein 2; CD2 antigen cytoplasmic tail-binding protein 2; CD2 cytoplasmic domain-binding protein 2; CD2 tail-binding protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,790,832 - 126,795,249 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,790,832 - 126,795,222 (-)EnsemblGRCm39 Ensembl
GRCm387127,191,660 - 127,196,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,191,660 - 127,196,050 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,335,174 - 134,339,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,982,808 - 126,987,148 (-)NCBIMGSCv36mm8
Celera7127,040,444 - 127,044,784 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO)
U4/U6 x U5 tri-snRNP complex  (ISO)
U5 snRNP  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15368895   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21873635   PMID:22922362   PMID:26082520   PMID:32541003   PMID:39308865  


Genomics

Comparative Map Data
Cd2bp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,790,832 - 126,795,249 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,790,832 - 126,795,222 (-)EnsemblGRCm39 Ensembl
GRCm387127,191,660 - 127,196,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,191,660 - 127,196,050 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,335,174 - 134,339,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,982,808 - 126,987,148 (-)NCBIMGSCv36mm8
Celera7127,040,444 - 127,044,784 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.38NCBI
CD2BP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,350,773 - 30,355,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,350,773 - 30,355,308 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,362,094 - 30,366,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,271,669 - 30,274,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 341630,271,669 - 30,274,128NCBI
Celera1629,932,030 - 29,936,625 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1627,924,218 - 27,928,813 (-)NCBIHuRef
CHM1_11631,679,142 - 31,683,737 (-)NCBICHM1_1
T2T-CHM13v2.01630,736,975 - 30,741,510 (-)NCBIT2T-CHM13v2.0
Cd2bp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,239,899 - 191,244,395 (-)NCBIGRCr8
mRatBN7.21181,809,399 - 181,815,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,809,406 - 181,813,448 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,160,300 - 190,164,292 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,346,388 - 197,350,380 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,014,918 - 190,018,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,635,445 - 198,641,195 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,635,447 - 198,638,944 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,629,176 - 205,633,588 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,451,415 - 186,455,407 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,601,393 - 186,606,562 (-)NCBI
Celera1179,461,081 - 179,465,073 (-)NCBICelera
Cytogenetic Map1q37NCBI
Cd2bp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,277,319 - 7,283,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,281,073 - 7,283,879 (-)NCBIChiLan1.0ChiLan1.0
CD2BP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,555,948 - 33,560,449 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,359,510 - 38,362,013 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,614,365 - 24,618,965 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11630,723,277 - 30,727,885 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1630,723,277 - 30,727,888 (-)Ensemblpanpan1.1panPan2
CD2BP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,736,932 - 17,739,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,737,056 - 17,813,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,313,603 - 19,316,566 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,870,689 - 17,873,654 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,871,191 - 17,873,650 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,670,660 - 17,673,625 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,586,077 - 17,589,033 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,901,772 - 17,904,738 (+)NCBIUU_Cfam_GSD_1.0
Cd2bp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,725,921 - 124,730,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,822,635 - 12,828,569 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,823,781 - 12,828,460 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD2BP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,955,255 - 17,962,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,957,697 - 17,961,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,396,393 - 18,400,481 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD2BP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,029,050 - 27,031,611 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,029,253 - 27,031,503 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,490,342 - 2,494,924 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd2bp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,510,448 - 13,514,811 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,510,541 - 13,514,872 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd2bp2
207 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:891
Count of miRNA genes:545
Interacting mature miRNAs:634
Transcripts:ENSMUST00000035771, ENSMUST00000166791
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse

Markers in Region
RH126583  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387127,193,771 - 127,194,080UniSTSGRCm38
GRCm38198,267,265 - 98,267,490UniSTSGRCm38
MGSCv377134,337,285 - 134,337,594UniSTSGRCm37
MGSCv371100,163,842 - 100,164,067UniSTSGRCm37
Celera7127,042,555 - 127,042,864UniSTS
Celera1101,145,868 - 101,146,093UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map1DUniSTS
AW048183  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387127,192,104 - 127,192,193UniSTSGRCm38
MGSCv377134,335,618 - 134,335,707UniSTSGRCm37
Celera7127,040,888 - 127,040,977UniSTS
Cytogenetic Map7F3UniSTS
Whitehead/MRC_RH71292.65UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001285905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM944739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000035771   ⟹   ENSMUSP00000044790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,792,830 - 126,795,047 (-)Ensembl
GRCm38.p6 Ensembl7127,193,658 - 127,195,875 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166791   ⟹   ENSMUSP00000132963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,790,832 - 126,795,172 (-)Ensembl
GRCm38.p6 Ensembl7127,191,660 - 127,196,000 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205316   ⟹   ENSMUSP00000145888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,791,197 - 126,795,159 (-)Ensembl
GRCm38.p6 Ensembl7127,192,025 - 127,195,987 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205321   ⟹   ENSMUSP00000145549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,793,699 - 126,795,114 (-)Ensembl
GRCm38.p6 Ensembl7127,194,527 - 127,195,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205355   ⟹   ENSMUSP00000145634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,793,634 - 126,794,616 (-)Ensembl
GRCm38.p6 Ensembl7127,194,462 - 127,195,444 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,791,195 - 126,795,121 (-)Ensembl
GRCm38.p6 Ensembl7127,192,023 - 127,195,949 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206026   ⟹   ENSMUSP00000146167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,791,168 - 126,795,110 (-)Ensembl
GRCm38.p6 Ensembl7127,191,996 - 127,195,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206081   ⟹   ENSMUSP00000146087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,794,264 - 126,795,222 (-)Ensembl
GRCm38.p6 Ensembl7127,195,092 - 127,196,050 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206587   ⟹   ENSMUSP00000145779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,793,794 - 126,795,138 (-)Ensembl
GRCm38.p6 Ensembl7127,194,622 - 127,195,966 (-)Ensembl
RefSeq Acc Id: NM_001285905   ⟹   NP_001272834
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,790,832 - 126,795,249 (-)NCBI
GRCm387127,191,660 - 127,196,077 (-)NCBI
Celera7127,040,444 - 127,044,861 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285906   ⟹   NP_001272835
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,790,832 - 126,795,249 (-)NCBI
GRCm387127,191,660 - 127,196,077 (-)NCBI
Celera7127,040,444 - 127,044,861 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285907   ⟹   NP_001272836
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,790,832 - 126,795,249 (-)NCBI
GRCm387127,191,660 - 127,196,077 (-)NCBI
Celera7127,040,444 - 127,044,861 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357817   ⟹   NP_001344746
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,790,832 - 126,795,249 (-)NCBI
GRCm387127,191,660 - 127,196,077 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027353   ⟹   NP_081629
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,790,832 - 126,795,249 (-)NCBI
GRCm387127,191,660 - 127,196,077 (-)NCBI
MGSCv377134,335,174 - 134,339,514 (-)RGD
Celera7127,040,444 - 127,044,861 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508198   ⟹   XP_006508261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,791,197 - 126,795,193 (-)NCBI
GRCm387127,192,025 - 127,196,016 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242979   ⟹   XP_030098839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,791,197 - 126,795,172 (-)NCBI
GRCm387127,192,025 - 127,195,997 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081629   ⟸   NM_027353
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272834   ⟸   NM_001285905
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272835   ⟸   NM_001285906
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272836   ⟸   NM_001285907
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508261   ⟸   XM_006508198
- Peptide Label: isoform X1
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344746   ⟸   NM_001357817
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098839   ⟸   XM_030242979
- Peptide Label: isoform X1
- UniProtKB: Q9CWK3 (UniProtKB/Swiss-Prot),   Q3TJX5 (UniProtKB/Swiss-Prot),   Q3U4A3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000146087   ⟸   ENSMUST00000206081
Ensembl Acc Id: ENSMUSP00000146167   ⟸   ENSMUST00000206026
Ensembl Acc Id: ENSMUSP00000145779   ⟸   ENSMUST00000206587
Ensembl Acc Id: ENSMUSP00000132963   ⟸   ENSMUST00000166791
Ensembl Acc Id: ENSMUSP00000145888   ⟸   ENSMUST00000205316
Ensembl Acc Id: ENSMUSP00000145549   ⟸   ENSMUST00000205321
Ensembl Acc Id: ENSMUSP00000145634   ⟸   ENSMUST00000205355
Ensembl Acc Id: ENSMUSP00000044790   ⟸   ENSMUST00000035771
Protein Domains
GYF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CWK3-F1-model_v2 AlphaFold Q9CWK3 1-342 view protein structure

Promoters
RGD ID:8665643
Promoter ID:EPDNEW_M10852
Type:initiation region
Name:Cd2bp2_1
Description:Mus musculus CD2 antigen binding protein 2 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387127,195,961 - 127,196,021EPDNEW
RGD ID:6840825
Promoter ID:MM_KWN:52751
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027353,   UC009JUJ.1,   UC009JUK.1,   UC009JUM.1,   UC009JUN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,339,421 - 134,339,921 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917483 AgrOrtholog
Ensembl Genes ENSMUSG00000042502 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035771 ENTREZGENE
  ENSMUST00000035771.5 UniProtKB/Swiss-Prot
  ENSMUST00000166791 ENTREZGENE
  ENSMUST00000166791.8 UniProtKB/Swiss-Prot
  ENSMUST00000205316 ENTREZGENE
  ENSMUST00000205316.2 UniProtKB/Swiss-Prot
  ENSMUST00000205321.2 UniProtKB/TrEMBL
  ENSMUST00000205355.2 UniProtKB/TrEMBL
  ENSMUST00000205525 ENTREZGENE
  ENSMUST00000206026 ENTREZGENE
  ENSMUST00000206026.2 UniProtKB/Swiss-Prot
  ENSMUST00000206081.2 UniProtKB/TrEMBL
  ENSMUST00000206587.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1490.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD2BP2/Lin1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GYF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GYF-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70233 UniProtKB/Swiss-Prot
MGD MGI:1917483 ENTREZGENE
NCBI Gene 70233 ENTREZGENE
PANTHER CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13138 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GYF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd2bp2 PhenoGen
PROSITE GYF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GYF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55277 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNG1_MOUSE UniProtKB/TrEMBL
  A0A0U1RNN2_MOUSE UniProtKB/TrEMBL
  A0A0U1RP07_MOUSE UniProtKB/TrEMBL
  A0A0U1RPR4_MOUSE UniProtKB/TrEMBL
  CD2B2_MOUSE UniProtKB/Swiss-Prot
  Q3TJX5 ENTREZGENE
  Q3U4A3 ENTREZGENE, UniProtKB/TrEMBL
  Q69ZP6_MOUSE UniProtKB/TrEMBL
  Q9CWK3 ENTREZGENE
UniProt Secondary Q3TJX5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-19 Cd2bp2  CD2 cytoplasmic tail binding protein 2    CD2 antigen (cytoplasmic tail) binding protein 2  Symbol and/or name change 5135510 APPROVED