Lrrc56 (leucine rich repeat containing 56) - Rat Genome Database

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Gene: Lrrc56 (leucine rich repeat containing 56) Mus musculus
Analyze
Symbol: Lrrc56
Name: leucine rich repeat containing 56
RGD ID: 1323225
MGI Page MGI
Description: Predicted to be involved in cell projection organization. Predicted to be located in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 39. Orthologous to human LRRC56 (leucine rich repeat containing 56).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730427C23Rik; BB110509; FLJ00101; leucine-rich repeat-containing protein 56; mFLJ00101
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,774,024 - 140,789,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,774,070 - 140,789,968 (+)EnsemblGRCm39 Ensembl
GRCm387141,194,111 - 141,210,055 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,194,157 - 141,210,055 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,380,029 - 148,395,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367141,046,464 - 141,061,375 (+)NCBIMGSCv36mm8
Celera7140,988,900 - 141,003,820 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map786.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute myeloid leukemia  (ISO)
adenoid cystic carcinoma  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
Beckwith-Wiedemann syndrome  (ISO)
bladder carcinoma  (ISO)
Breast Neoplasms  (ISO)
Chanarin-Dorfman syndrome  (ISO)
chronic lymphocytic leukemia  (ISO)
Colorectal Neoplasms  (ISO)
congenital fibrosis of the extraocular muscles  (ISO)
Congenital Myopathy with Excess of Muscle Spindles  (ISO)
Costello syndrome  (ISO)
delta beta-thalassemia  (ISO)
developmental and epileptic encephalopathy  (ISO)
disease of cellular proliferation  (ISO)
early infantile epileptic encephalopathy  (ISO)
epidermal nevus  (ISO)
esophageal carcinoma  (ISO)
Follicular Thyroid Cancer  (ISO)
follicular thyroid carcinoma  (ISO)
gastric adenocarcinoma  (ISO)
genetic disease  (ISO)
glioblastoma  (ISO)
head and neck squamous cell carcinoma  (ISO)
hepatocellular carcinoma  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
Hydrops Fetalis  (ISO)
Hypophosphatemic Rickets  (ISO)
immunodeficiency 39  (ISO)
intellectual disability  (ISO)
large congenital melanocytic nevus  (ISO)
linear nevus sebaceous syndrome  (ISO)
lung adenocarcinoma  (ISO)
lung non-small cell carcinoma  (ISO)
lung squamous cell carcinoma  (ISO)
melanoma  (ISO)
multiple myeloma  (ISO)
myelodysplastic syndrome  (ISO)
Nasopharyngeal Neoplasms  (ISO)
neuronal ceroid lipofuscinosis  (ISO)
Noonan syndrome  (ISO)
Noonan syndrome 1  (ISO)
Noonan syndrome 3  (ISO)
ovarian cancer  (ISO)
ovarian serous cystadenocarcinoma  (ISO)
pancreatic adenocarcinoma  (ISO)
papillary renal cell carcinoma  (ISO)
Paraproteinemias  (ISO)
parathyroid adenoma  (ISO)
Pigmented Nevus  (ISO)
plasma cell neoplasm  (ISO)
primary ciliary dyskinesia 39  (ISO)
prostate adenocarcinoma  (ISO)
Prostate Cancer, Hereditary, 1  (ISO)
pulmonary valve stenosis  (ISO)
RASopathy  (ISO)
rhabdomyosarcoma  (ISO)
Salivary Gland Neoplasms  (ISO)
Sebaceous Nevus Syndrome and Hemimegalencephaly  (ISO)
skin melanoma  (ISO)
spermatocytoma  (ISO)
Sporadic Papillary Renal Cell Carcinoma  (ISO)
thymoma  (ISO)
Thyroid Neoplasms  (ISO)
transitional cell carcinoma  (ISO)
urinary bladder cancer  (ISO)
Urinary Bladder Neoplasm  (ISO)
uterine cancer  (ISO)
uterine carcinosarcoma  (ISO)
Uterine Cervical Neoplasms  (ISO)
Vascular Malformations  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21677750   PMID:38355793  


Genomics

Comparative Map Data
Lrrc56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,774,024 - 140,789,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,774,070 - 140,789,968 (+)EnsemblGRCm39 Ensembl
GRCm387141,194,111 - 141,210,055 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,194,157 - 141,210,055 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,380,029 - 148,395,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367141,046,464 - 141,061,375 (+)NCBIMGSCv36mm8
Celera7140,988,900 - 141,003,820 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map786.48NCBI
LRRC56
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811506,462 - 554,912 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11537,527 - 554,912 (+)EnsemblGRCh38hg38GRCh38
GRCh3711537,527 - 554,912 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611527,527 - 544,916 (+)NCBINCBI36Build 36hg18NCBI36
Celera11599,982 - 617,257 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef11352,197 - 369,600 (+)NCBIHuRef
CHM1_111536,437 - 553,690 (+)NCBICHM1_1
T2T-CHM13v2.011584,505 - 601,897 (+)NCBIT2T-CHM13v2.0
Lrrc56
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,729,402 - 205,744,754 (+)NCBIGRCr8
mRatBN7.21196,299,843 - 196,315,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1196,299,846 - 196,315,172 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,646,190 - 204,660,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,773,007 - 211,787,341 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,447,141 - 204,461,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,182,232 - 214,197,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,182,830 - 214,197,184 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,099,377 - 221,114,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,390,131 - 201,404,485 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,541,130 - 201,555,485 (+)NCBI
Celera1193,934,697 - 193,949,044 (+)NCBICelera
Cytogenetic Map1q41NCBI
Lrrc56
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,491,688 - 11,506,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,493,299 - 11,507,022 (-)NCBIChiLan1.0ChiLan1.0
LRRC56
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v292,886,105 - 2,932,088 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1112,102,368 - 2,149,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011514,227 - 559,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111571,886 - 588,750 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11575,495 - 588,750 (+)Ensemblpanpan1.1panPan2
LRRC56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,647,024 - 25,662,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,647,882 - 25,664,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,295,967 - 25,311,498 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,231,280 - 26,246,814 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,231,836 - 26,246,806 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,741,056 - 25,756,567 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,386,038 - 25,401,571 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,998,200 - 26,013,733 (+)NCBIUU_Cfam_GSD_1.0
Lrrc56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947379,529 - 397,647 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936888382,062 - 402,083 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936888379,622 - 397,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC56
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2304,430 - 323,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12303,836 - 323,701 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22350,721 - 368,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC56
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11352,131 - 370,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1355,982 - 369,633 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603897,411,774 - 97,429,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc56
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476621,896,933 - 21,907,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476621,895,967 - 21,910,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1016
Count of miRNA genes:446
Interacting mature miRNAs:533
Transcripts:ENSMUST00000047093, ENSMUST00000070458, ENSMUST00000084446, ENSMUST00000144008, ENSMUST00000144199, ENSMUST00000150141
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse

Markers in Region
BB110509  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387141,200,800 - 141,200,908UniSTSGRCm38
MGSCv377148,386,699 - 148,386,807UniSTSGRCm37
Celera7140,994,557 - 140,994,665UniSTS
Cytogenetic Map7F5UniSTS
Whitehead/MRC_RH71427.62UniSTS
RH94696  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387141,195,319 - 141,195,570UniSTSGRCm38
MGSCv377148,381,218 - 148,381,469UniSTSGRCm37
Celera7140,989,076 - 140,989,327UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.2UniSTS
PMC112649P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387141,192,700 - 141,193,047UniSTSGRCm38
MGSCv377148,378,599 - 148,378,946UniSTSGRCm37
Celera7140,986,409 - 140,986,756UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.2UniSTS
PMC112649P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387141,192,422 - 141,192,618UniSTSGRCm38
MGSCv377148,378,321 - 148,378,517UniSTSGRCm37
Celera7140,986,131 - 140,986,327UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.2UniSTS
PMC86690P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387141,192,980 - 141,193,414UniSTSGRCm38
MGSCv377148,378,879 - 148,379,313UniSTSGRCm37
Celera7140,986,689 - 140,987,123UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001172064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006536247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY075853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ092649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000047093   ⟹   ENSMUSP00000048691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,774,991 - 140,789,960 (+)Ensembl
GRCm38.p6 Ensembl7141,195,078 - 141,210,047 (+)Ensembl
Ensembl Acc Id: ENSMUST00000070458   ⟹   ENSMUSP00000063912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,774,089 - 140,789,962 (+)Ensembl
GRCm38.p6 Ensembl7141,194,176 - 141,210,049 (+)Ensembl
Ensembl Acc Id: ENSMUST00000084446   ⟹   ENSMUSP00000081486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,774,070 - 140,789,968 (+)Ensembl
GRCm38.p6 Ensembl7141,194,157 - 141,210,055 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144008   ⟹   ENSMUSP00000147342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,776,847 - 140,779,748 (+)Ensembl
GRCm38.p6 Ensembl7141,196,934 - 141,199,835 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,774,092 - 140,780,851 (+)Ensembl
GRCm38.p6 Ensembl7141,194,179 - 141,200,938 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,775,056 - 140,778,196 (+)Ensembl
GRCm38.p6 Ensembl7141,195,143 - 141,198,283 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209220   ⟹   ENSMUSP00000147745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7140,775,071 - 140,785,726 (+)Ensembl
GRCm38.p6 Ensembl7141,195,158 - 141,205,813 (+)Ensembl
RefSeq Acc Id: NM_001172064   ⟹   NP_001165535
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,043 - 140,789,968 (+)NCBI
GRCm387141,194,130 - 141,210,055 (+)NCBI
MGSCv377148,380,029 - 148,395,954 (+)RGD
Celera7140,988,900 - 141,003,820 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172065   ⟹   NP_001165536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,043 - 140,789,968 (+)NCBI
GRCm387141,194,130 - 141,210,055 (+)NCBI
MGSCv377148,380,029 - 148,395,954 (+)RGD
Celera7140,988,900 - 141,003,820 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357825   ⟹   NP_001344754
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,043 - 140,789,968 (+)NCBI
GRCm387141,194,130 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153777   ⟹   NP_722472
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,775,056 - 140,789,968 (+)NCBI
GRCm387141,195,143 - 141,210,055 (+)NCBI
MGSCv377148,380,029 - 148,395,954 (+)RGD
Celera7140,988,900 - 141,003,820 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006536240   ⟹   XP_006536303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,867 - 140,789,968 (+)NCBI
GRCm387141,195,019 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536241   ⟹   XP_006536304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,024 - 140,789,968 (+)NCBI
GRCm387141,194,111 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536242   ⟹   XP_006536305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,024 - 140,789,968 (+)NCBI
GRCm387141,194,678 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536244   ⟹   XP_006536307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,778,296 - 140,789,968 (+)NCBI
GRCm387141,198,383 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536245   ⟹   XP_006536308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,025 - 140,789,968 (+)NCBI
GRCm387141,194,112 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536246   ⟹   XP_006536309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,866 - 140,789,968 (+)NCBI
GRCm387141,195,019 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006536247   ⟹   XP_006536310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,026 - 140,789,968 (+)NCBI
GRCm387141,194,112 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312294   ⟹   XP_017167783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,867 - 140,789,968 (+)NCBI
GRCm387141,195,020 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242983   ⟹   XP_030098843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,025 - 140,789,968 (+)NCBI
GRCm387141,194,112 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242984   ⟹   XP_030098844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,916 - 140,789,968 (+)NCBI
GRCm387141,195,025 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242985   ⟹   XP_030098845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,025 - 140,789,968 (+)NCBI
GRCm387141,194,112 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242986   ⟹   XP_030098846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,920 - 140,789,968 (+)NCBI
GRCm387141,195,030 - 141,210,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153432   ⟹   XP_036009325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,026 - 140,789,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153433   ⟹   XP_036009326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,026 - 140,789,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153434   ⟹   XP_036009327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,920 - 140,789,968 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153435   ⟹   XP_036009328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397140,774,918 - 140,789,968 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001165535 (Get FASTA)   NCBI Sequence Viewer  
  NP_001165536 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344754 (Get FASTA)   NCBI Sequence Viewer  
  NP_722472 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536303 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536304 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536305 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536307 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536308 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536309 (Get FASTA)   NCBI Sequence Viewer  
  XP_006536310 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167783 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098843 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098844 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098845 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098846 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009325 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009326 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009327 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009328 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH27807 (Get FASTA)   NCBI Sequence Viewer  
  BAC25520 (Get FASTA)   NCBI Sequence Viewer  
  BAD90162 (Get FASTA)   NCBI Sequence Viewer  
  EDL18010 (Get FASTA)   NCBI Sequence Viewer  
  EDL18011 (Get FASTA)   NCBI Sequence Viewer  
  EDL18012 (Get FASTA)   NCBI Sequence Viewer  
  EDL18013 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000048691
  ENSMUSP00000048691.5
  ENSMUSP00000063912
  ENSMUSP00000063912.5
  ENSMUSP00000081486
  ENSMUSP00000081486.3
  ENSMUSP00000147342.2
  ENSMUSP00000147745.2
GenBank Protein Q8K375 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_722472   ⟸   NM_153777
- Peptide Label: isoform a
- UniProtKB: Q571F2 (UniProtKB/Swiss-Prot),   Q8K375 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165535   ⟸   NM_001172064
- Peptide Label: isoform a
- UniProtKB: Q571F2 (UniProtKB/Swiss-Prot),   Q8K375 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165536   ⟸   NM_001172065
- Peptide Label: isoform b
- UniProtKB: Q8BMW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006536304   ⟸   XM_006536241
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006536305   ⟸   XM_006536242
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006536309   ⟸   XM_006536246
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006536303   ⟸   XM_006536240
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006536308   ⟸   XM_006536245
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006536310   ⟸   XM_006536247
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006536307   ⟸   XM_006536244
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017167783   ⟸   XM_017312294
- Peptide Label: isoform X5
- UniProtKB: Q8BMW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098845   ⟸   XM_030242985
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030098843   ⟸   XM_030242983
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001344754   ⟸   NM_001357825
- Peptide Label: isoform a
- UniProtKB: Q8K375 (UniProtKB/Swiss-Prot),   Q571F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030098844   ⟸   XM_030242984
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030098846   ⟸   XM_030242986
- Peptide Label: isoform X6
Ensembl Acc Id: ENSMUSP00000048691   ⟸   ENSMUST00000047093
Ensembl Acc Id: ENSMUSP00000147342   ⟸   ENSMUST00000144008
Ensembl Acc Id: ENSMUSP00000081486   ⟸   ENSMUST00000084446
Ensembl Acc Id: ENSMUSP00000063912   ⟸   ENSMUST00000070458
Ensembl Acc Id: ENSMUSP00000147745   ⟸   ENSMUST00000209220
RefSeq Acc Id: XP_036009326   ⟸   XM_036153433
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009325   ⟸   XM_036153432
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009328   ⟸   XM_036153435
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036009327   ⟸   XM_036153434
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K375-F1-model_v2 AlphaFold Q8K375 1-552 view protein structure

Promoters
RGD ID:8666079
Promoter ID:EPDNEW_M11071
Type:initiation region
Name:Lrrc56_1
Description:Mus musculus leucine rich repeat containing 56 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11072  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387141,194,179 - 141,194,239EPDNEW
RGD ID:8666081
Promoter ID:EPDNEW_M11072
Type:multiple initiation site
Name:Lrrc56_2
Description:Mus musculus leucine rich repeat containing 56 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11071  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387141,195,140 - 141,195,200EPDNEW
RGD ID:6841472
Promoter ID:MM_KWN:53228
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000026572,   ENSMUST00000106028,   NM_001130444,   NM_001172064,   NM_001172065,   OTTMUST00000039711,   OTTMUST00000039713,   OTTMUST00000039714,   OTTMUST00000056184,   OTTMUST00000056187,   OTTMUST00000056189
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367148,379,891 - 148,380,757 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917802 AgrOrtholog
Ensembl Genes ENSMUSG00000038637 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047093 ENTREZGENE
  ENSMUST00000047093.11 UniProtKB/Swiss-Prot
  ENSMUST00000070458 ENTREZGENE
  ENSMUST00000070458.11 UniProtKB/Swiss-Prot
  ENSMUST00000084446 ENTREZGENE
  ENSMUST00000084446.9 UniProtKB/TrEMBL
  ENSMUST00000144008.2 UniProtKB/TrEMBL
  ENSMUST00000209220.2 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRC56 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70552 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917802 ENTREZGENE
NCBI Gene 70552 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 56 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22708 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrrc56 PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GR20_MOUSE UniProtKB/TrEMBL
  A0A1B0GS06_MOUSE UniProtKB/TrEMBL
  LRC56_MOUSE UniProtKB/Swiss-Prot
  Q571F2 ENTREZGENE
  Q8BMW2 ENTREZGENE, UniProtKB/TrEMBL
  Q8K375 ENTREZGENE
UniProt Secondary Q571F2 UniProtKB/Swiss-Prot