Cdh16 (cadherin 16) - Rat Genome Database

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Gene: Cdh16 (cadherin 16) Mus musculus
Analyze
Symbol: Cdh16
Name: cadherin 16
RGD ID: 1323201
MGI Page MGI
Description: Predicted to enable calcium ion binding activity. Acts upstream of or within calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Located in basolateral plasma membrane. Is expressed in foregut; genitourinary system; and lung. Orthologous to human CDH16 (cadherin 16).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cadherin-16; kidney-specific cadherin; KSP-cadherin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,328,547 - 105,351,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,328,543 - 105,351,028 (-)EnsemblGRCm39 Ensembl
GRCm388104,601,915 - 104,624,396 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,601,911 - 104,624,396 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,138,047 - 107,148,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368107,503,276 - 107,513,390 (-)NCBIMGSCv36mm8
Celera8108,846,745 - 108,856,860 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. CDH16/Ksp-cadherin is expressed in the developing thyroid gland and is strongly down-regulated in thyroid carcinomas. Calì G, etal., Endocrinology. 2012 Jan;153(1):522-34. doi: 10.1210/en.2011-1572. Epub 2011 Oct 25.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
Additional References at PubMed
PMID:7615566   PMID:9721215   PMID:10349636   PMID:10473139   PMID:10516284   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12089379   PMID:12217876   PMID:12466851   PMID:12477932  
PMID:15023525   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17093497   PMID:19234442   PMID:21267068   PMID:21345181   PMID:21677750   PMID:21873635   PMID:22132122   PMID:22135066  
PMID:22511595   PMID:26243870   PMID:28215940   PMID:29237738   PMID:32504044   PMID:32896034   PMID:33938239   PMID:36465115   PMID:36522157  


Genomics

Comparative Map Data
Cdh16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,328,547 - 105,351,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,328,543 - 105,351,028 (-)EnsemblGRCm39 Ensembl
GRCm388104,601,915 - 104,624,396 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,601,911 - 104,624,396 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,138,047 - 107,148,161 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368107,503,276 - 107,513,390 (-)NCBIMGSCv36mm8
Celera8108,846,745 - 108,856,860 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
CDH16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381666,908,122 - 66,918,885 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1666,908,122 - 66,918,917 (-)EnsemblGRCh38hg38GRCh38
GRCh371666,942,025 - 66,952,788 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,499,526 - 65,510,267 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,499,525 - 65,510,267NCBI
Celera1651,450,284 - 51,461,025 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1652,816,134 - 52,826,996 (-)NCBIHuRef
CHM1_11668,349,034 - 68,359,895 (-)NCBICHM1_1
T2T-CHM13v2.01672,702,422 - 72,713,185 (-)NCBIT2T-CHM13v2.0
Cdh16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819367,202 - 377,710 (+)NCBIGRCr8
mRatBN7.219360,824 - 371,008 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19360,824 - 371,007 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx19348,915 - 359,097 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,115,720 - 1,125,902 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019390,913 - 401,095 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.019568,329 - 578,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19568,287 - 578,520 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019562,589 - 572,773 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419279,359 - 289,543 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.119279,358 - 289,542 (+)NCBI
Celera19357,030 - 367,220 (+)NCBICelera
Cytogenetic Map19p14NCBI
Cdh16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,413,349 - 23,423,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543323,413,904 - 23,423,324 (-)NCBIChiLan1.0ChiLan1.0
CDH16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,408,051 - 76,418,829 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,320,586 - 82,331,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,223,506 - 47,234,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,325,345 - 66,336,573 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,325,615 - 66,335,657 (-)Ensemblpanpan1.1panPan2
CDH16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,398,443 - 82,417,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,398,541 - 82,408,061 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,387,135 - 82,406,493 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,835,051 - 82,854,428 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,835,148 - 82,844,668 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,658,232 - 82,677,589 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,345,049 - 82,364,362 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,984,014 - 83,003,379 (+)NCBIUU_Cfam_GSD_1.0
Cdh16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,419,995 - 42,428,117 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647517,161,228 - 17,169,113 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,589,184 - 27,598,987 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,589,183 - 27,599,002 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDH16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,607,436 - 52,618,645 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl552,607,396 - 52,618,310 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,295,627 - 23,306,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,590,445 - 19,602,672 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,590,590 - 19,600,101 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdh16
508 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:135
Interacting mature miRNAs:145
Transcripts:ENSMUST00000163783
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse

Markers in Region
AF016271  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388104,614,313 - 104,614,393UniSTSGRCm38
MGSCv378107,138,213 - 107,138,293UniSTSGRCm37
Celera8108,846,911 - 108,846,991UniSTS
Cytogenetic Map8D3UniSTS
cM Map850.0UniSTS
Whitehead/MRC_RH81221.56UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000163783   ⟹   ENSMUSP00000129663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,774 - 105,351,028 (-)Ensembl
GRCm38.p6 Ensembl8104,614,142 - 104,624,396 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211849   ⟹   ENSMUSP00000148269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,787 - 105,342,746 (-)Ensembl
GRCm38.p6 Ensembl8104,614,155 - 104,616,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211889   ⟹   ENSMUSP00000148491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,794 - 105,342,768 (-)Ensembl
GRCm38.p6 Ensembl8104,614,162 - 104,616,136 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211903   ⟹   ENSMUSP00000148478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,767 - 105,350,895 (-)Ensembl
GRCm38.p6 Ensembl8104,614,135 - 104,624,263 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212045   ⟹   ENSMUSP00000148602
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,837 - 105,343,014 (-)Ensembl
GRCm38.p6 Ensembl8104,614,205 - 104,616,382 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212318   ⟹   ENSMUSP00000148337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,328,543 - 105,339,896 (-)Ensembl
GRCm38.p6 Ensembl8104,601,911 - 104,613,264 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212324   ⟹   ENSMUSP00000148363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,773 - 105,350,847 (-)Ensembl
GRCm38.p6 Ensembl8104,614,141 - 104,624,215 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212420   ⟹   ENSMUSP00000148711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,807 - 105,344,752 (-)Ensembl
GRCm38.p6 Ensembl8104,614,175 - 104,618,120 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212447   ⟹   ENSMUSP00000148835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,345,941 - 105,350,816 (-)Ensembl
GRCm38.p6 Ensembl8104,619,309 - 104,624,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212662   ⟹   ENSMUSP00000148793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,348,227 - 105,350,581 (-)Ensembl
GRCm38.p6 Ensembl8104,621,595 - 104,623,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,344,314 - 105,350,898 (-)Ensembl
GRCm38.p6 Ensembl8104,617,682 - 104,624,266 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212748   ⟹   ENSMUSP00000148809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,346,655 - 105,350,922 (-)Ensembl
GRCm38.p6 Ensembl8104,620,023 - 104,624,290 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212882   ⟹   ENSMUSP00000148726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,328,547 - 105,350,977 (-)Ensembl
GRCm38.p6 Ensembl8104,601,915 - 104,624,345 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213033   ⟹   ENSMUSP00000148701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8105,340,779 - 105,344,614 (-)Ensembl
GRCm38.p6 Ensembl8104,614,147 - 104,617,982 (-)Ensembl
RefSeq Acc Id: NM_001252627   ⟹   NP_001239556
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398105,340,770 - 105,351,028 (-)NCBI
GRCm388104,614,138 - 104,624,396 (-)NCBI
Celera8108,834,513 - 108,856,995 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252628   ⟹   NP_001239557
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398105,328,547 - 105,351,028 (-)NCBI
GRCm388104,601,915 - 104,624,396 (-)ENTREZGENE
Celera8108,834,513 - 108,856,995 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007663   ⟹   NP_031689
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398105,340,770 - 105,351,028 (-)NCBI
GRCm388104,614,138 - 104,624,396 (-)NCBI
MGSCv378107,138,047 - 107,148,161 (-)RGD
Celera8108,834,513 - 108,856,995 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530629   ⟹   XP_006530692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398105,340,770 - 105,350,972 (-)NCBI
GRCm388104,614,138 - 104,624,340 (-)NCBI
Sequence:
RefSeq Acc Id: NP_031689   ⟸   NM_007663
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9JLZ5 (UniProtKB/Swiss-Prot),   O88338 (UniProtKB/Swiss-Prot),   Q546A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239557   ⟸   NM_001252628
- Peptide Label: isoform 3 precursor
- UniProtKB: Q8C730 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239556   ⟸   NM_001252627
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3TPA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530692   ⟸   XM_006530629
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000129663   ⟸   ENSMUST00000163783
RefSeq Acc Id: ENSMUSP00000148478   ⟸   ENSMUST00000211903
RefSeq Acc Id: ENSMUSP00000148491   ⟸   ENSMUST00000211889
RefSeq Acc Id: ENSMUSP00000148269   ⟸   ENSMUST00000211849
RefSeq Acc Id: ENSMUSP00000148701   ⟸   ENSMUST00000213033
RefSeq Acc Id: ENSMUSP00000148793   ⟸   ENSMUST00000212662
RefSeq Acc Id: ENSMUSP00000148726   ⟸   ENSMUST00000212882
RefSeq Acc Id: ENSMUSP00000148809   ⟸   ENSMUST00000212748
RefSeq Acc Id: ENSMUSP00000148602   ⟸   ENSMUST00000212045
RefSeq Acc Id: ENSMUSP00000148835   ⟸   ENSMUST00000212447
RefSeq Acc Id: ENSMUSP00000148711   ⟸   ENSMUST00000212420
RefSeq Acc Id: ENSMUSP00000148337   ⟸   ENSMUST00000212318
RefSeq Acc Id: ENSMUSP00000148363   ⟸   ENSMUST00000212324
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88338-F1-model_v2 AlphaFold O88338 1-830 view protein structure

Promoters
RGD ID:8668027
Promoter ID:EPDNEW_M12045
Type:initiation region
Name:Cdh16_1
Description:Mus musculus cadherin 16 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388104,624,294 - 104,624,354EPDNEW
RGD ID:6842913
Promoter ID:MM_KWN:55496
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000034352,   UC009NAY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368107,148,441 - 107,148,962 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106671 AgrOrtholog
Ensembl Genes ENSMUSG00000031881 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000163783 ENTREZGENE
  ENSMUST00000163783.4 UniProtKB/TrEMBL
  ENSMUST00000211849.2 UniProtKB/TrEMBL
  ENSMUST00000211889.2 UniProtKB/TrEMBL
  ENSMUST00000211903 ENTREZGENE
  ENSMUST00000211903.2 UniProtKB/Swiss-Prot
  ENSMUST00000212045.2 UniProtKB/TrEMBL
  ENSMUST00000212318.2 UniProtKB/TrEMBL
  ENSMUST00000212324.2 UniProtKB/TrEMBL
  ENSMUST00000212420.2 UniProtKB/TrEMBL
  ENSMUST00000212447.2 UniProtKB/TrEMBL
  ENSMUST00000212662.2 UniProtKB/TrEMBL
  ENSMUST00000212748.2 UniProtKB/TrEMBL
  ENSMUST00000212882 ENTREZGENE
  ENSMUST00000212882.2 UniProtKB/TrEMBL
  ENSMUST00000213033.2 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12556 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:106671 ENTREZGENE
NCBI Gene 12556 ENTREZGENE
PANTHER CADHERIN 16, KSP-CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CADHERIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  CADHERIN-23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdh16 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RL88_MOUSE UniProtKB/TrEMBL
  A0A1D5RLE7_MOUSE UniProtKB/TrEMBL
  A0A1D5RLG9_MOUSE UniProtKB/TrEMBL
  A0A1D5RLS8_MOUSE UniProtKB/TrEMBL
  A0A1D5RM27_MOUSE UniProtKB/TrEMBL
  A0A1D5RMA8_MOUSE UniProtKB/TrEMBL
  A0A1D5RMB7_MOUSE UniProtKB/TrEMBL
  A0A1D5RMI6_MOUSE UniProtKB/TrEMBL
  A0A1D5RMK0_MOUSE UniProtKB/TrEMBL
  A0A1D5RMM2_MOUSE UniProtKB/TrEMBL
  A8C1V6_MOUSE UniProtKB/TrEMBL
  CAD16_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TPA4 ENTREZGENE, UniProtKB/TrEMBL
  Q546A8 ENTREZGENE, UniProtKB/TrEMBL
  Q8C730 ENTREZGENE, UniProtKB/TrEMBL
  Q9JLZ5 ENTREZGENE
UniProt Secondary Q9JLZ5 UniProtKB/Swiss-Prot