Tmem108 (transmembrane protein 108) - Rat Genome Database
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Gene: Tmem108 (transmembrane protein 108) Mus musculus
Analyze
Symbol: Tmem108
Name: transmembrane protein 108
RGD ID: 1323037
MGI Page MGI
Description: Involved in several processes, including cellular response to brain-derived neurotrophic factor stimulus; nervous system development; and regulation of signal transduction. Localizes to several cellular components, including axon; endosome; and postsynaptic density. Is expressed in 4th ventricle lateral recess; cerebral cortex marginal layer; and lateral ventricle choroid plexus. Orthologous to human TMEM108 (transmembrane protein 108); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI462967; B130017P16Rik; KIAA1690; R74726; retrolinkin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,360,135 - 103,639,099 (-)NCBIGRCm39mm39
GRCm389103,482,936 - 103,761,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,482,947 - 103,761,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,385,266 - 103,664,167 (-)NCBIGRCm37mm9NCBIm37
MGSCv369103,342,589 - 103,619,967 (-)NCBImm8
Celera9103,034,734 - 103,314,283 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11134256   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17287360  
PMID:18799693   PMID:20562862   PMID:21267068   PMID:21677750   PMID:21849472   PMID:21873635   PMID:21947380   PMID:27605705   PMID:27626380   PMID:28096412  


Genomics

Comparative Map Data
Tmem108
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,360,135 - 103,639,099 (-)NCBIGRCm39mm39
GRCm389103,482,936 - 103,761,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,482,947 - 103,761,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,385,266 - 103,664,167 (-)NCBIGRCm37mm9NCBIm37
MGSCv369103,342,589 - 103,619,967 (-)NCBImm8
Celera9103,034,734 - 103,314,283 (-)NCBICelera
Cytogenetic Map9F1NCBI
TMEM108
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3133,038,391 - 133,397,792 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl3133,038,391 - 133,397,775 (+)EnsemblGRCh38hg38GRCh38
GRCh383133,038,391 - 133,397,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373132,757,171 - 133,116,619 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,239,943 - 134,597,748 (+)NCBINCBI36hg18NCBI36
Celera3131,182,649 - 131,543,167 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3130,137,369 - 130,497,019 (+)NCBIHuRef
CHM1_13132,720,148 - 133,079,967 (+)NCBICHM1_1
Tmem108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08111,968,568 - 112,265,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,970,288 - 111,984,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,359,492 - 111,611,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,526,665 - 108,559,580 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18108,546,130 - 108,650,112 (-)NCBI
Celera8103,441,328 - 103,731,916 (-)NCBICelera
Cytogenetic Map8q32NCBI
Tmem108
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBIChiLan1.0ChiLan1.0
TMEM108
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13137,581,678 - 137,944,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,775,339 - 137,944,660 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03130,105,824 - 130,468,122 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM108
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2329,992,021 - 30,396,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12329,992,038 - 30,331,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tmem108
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365296,326,775 - 6,629,247 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM108
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,180,197 - 74,555,946 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,524,122 - 74,556,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,988,526 - 82,020,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM108
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,921,064 - 57,248,199 (-)NCBI
ChlSab1.1 Ensembl1556,921,069 - 57,200,901 (-)Ensembl
Tmem108
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247309,314,308 - 9,683,324 (+)NCBI

Position Markers
C86942  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,546,948 - 103,547,191UniSTSGRCm38
MGSCv379103,449,278 - 103,449,521UniSTSGRCm37
Celera9103,096,421 - 103,096,664UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91054.74UniSTS
01.MMHAP90FRA7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,606,449 - 103,606,605UniSTSGRCm38
MGSCv379103,508,779 - 103,508,935UniSTSGRCm37
Celera9103,158,866 - 103,159,022UniSTS
Cytogenetic Map9F1UniSTS
Whitehead_YAC9 UniSTS
D9Mit14  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,601,139 - 103,601,214UniSTSGRCm38
MGSCv379103,503,469 - 103,503,544UniSTSGRCm37
Celera9103,153,562 - 103,153,631UniSTS
Cytogenetic Map9F1UniSTS
cM Map957.0UniSTS
Whitehead Genetic957.9UniSTS
Whitehead/MRC_RH91063.22UniSTS
D9Mit14.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,600,890 - 103,601,062UniSTSGRCm38
MGSCv379103,503,220 - 103,503,392UniSTSGRCm37
Celera9103,153,313 - 103,153,485UniSTS
Cytogenetic Map9F1UniSTS
cM Map957.0UniSTS
cM Map9 UniSTS
Whitehead Genetic957.9UniSTS
D9Dcr45  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,531,214 - 103,531,316UniSTSGRCm38
MGSCv379103,433,544 - 103,433,646UniSTSGRCm37
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
AI462967  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,483,121 - 103,483,209UniSTSGRCm38
MGSCv379103,385,451 - 103,385,539UniSTSGRCm37
Celera9103,034,919 - 103,035,007UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91055.36UniSTS
R74726  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,484,559 - 103,484,751UniSTSGRCm38
MGSCv379103,386,889 - 103,387,081UniSTSGRCm37
Celera9103,036,357 - 103,036,549UniSTS
Cytogenetic Map9F1UniSTS
Whitehead_YAC9 UniSTS
D12Bwg0892e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F1UniSTS
cM Map1222.0UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:606
Count of miRNA genes:429
Interacting mature miRNAs:477
Transcripts:ENSMUST00000049452
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT954254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049452   ⟹   ENSMUSP00000046021
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,482,947 - 103,692,807 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,751,413 - 103,761,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189066   ⟹   ENSMUSP00000141160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,484,436 - 103,761,794 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189588   ⟹   ENSMUSP00000140027
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,483,778 - 103,761,837 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,484,439 - 103,493,611 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215136   ⟹   ENSMUSP00000149890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9103,506,666 - 103,761,829 (-)Ensembl
RefSeq Acc Id: NM_001359465   ⟹   NP_001346394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,135 - 103,570,006 (-)NCBI
GRCm389103,482,936 - 103,692,807 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178638   ⟹   NP_848753
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,135 - 103,639,036 (-)NCBI
GRCm389103,482,936 - 103,761,837 (-)NCBI
MGSCv379103,385,266 - 103,664,167 (-)RGD
Celera9103,034,734 - 103,314,283 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511863   ⟹   XP_006511926
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,639,097 (-)NCBI
GRCm389103,482,945 - 103,761,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511864   ⟹   XP_006511927
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,639,097 (-)NCBI
GRCm389103,482,945 - 103,761,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511865   ⟹   XP_006511928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,638,030 (-)NCBI
GRCm389103,482,945 - 103,761,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511866   ⟹   XP_006511929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,570,369 (-)NCBI
GRCm389103,482,945 - 103,693,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511868   ⟹   XP_006511931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,639,099 (-)NCBI
GRCm389103,482,945 - 103,761,900 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244730   ⟹   XP_030100590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,570,369 (-)NCBI
GRCm389103,482,945 - 103,693,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244731   ⟹   XP_030100591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,360,144 - 103,570,360 (-)NCBI
GRCm389103,482,945 - 103,693,180 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_848753   ⟸   NM_178638
- Peptide Label: precursor
- UniProtKB: Q8BHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511931   ⟸   XM_006511868
- Peptide Label: isoform X2
- UniProtKB: Q8BHE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511927   ⟸   XM_006511864
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511926   ⟸   XM_006511863
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511928   ⟸   XM_006511865
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511929   ⟸   XM_006511866
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001346394   ⟸   NM_001359465
- Peptide Label: precursor
RefSeq Acc Id: XP_030100590   ⟸   XM_030244730
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030100591   ⟸   XM_030244731
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000046021   ⟸   ENSMUST00000049452
RefSeq Acc Id: ENSMUSP00000149890   ⟸   ENSMUST00000215136
RefSeq Acc Id: ENSMUSP00000141160   ⟸   ENSMUST00000189066
RefSeq Acc Id: ENSMUSP00000140027   ⟸   ENSMUST00000189588

Promoters
RGD ID:6845251
Promoter ID:MM_KWN:58593
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_178638,   NM_178638_TMEM108,   UC009RGZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,664,001 - 103,664,501 (-)MPROMDB
RGD ID:8670646
Promoter ID:EPDNEW_M13354
Type:single initiation site
Name:Tmem108_2
Description:Mus musculus transmembrane protein 108 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13355  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389103,665,898 - 103,665,958EPDNEW
RGD ID:8670648
Promoter ID:EPDNEW_M13355
Type:initiation region
Name:Tmem108_1
Description:Mus musculus transmembrane protein 108 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13354  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389103,761,799 - 103,761,859EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1932411 AgrOrtholog
Ensembl Genes ENSMUSG00000042757 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000046021 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140027 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141160 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000149890 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049452 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000189066 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000189588 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000215136 UniProtKB/TrEMBL
InterPro TMEM108 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:81907 UniProtKB/Swiss-Prot
MGD MGI:1932411 ENTREZGENE
NCBI Gene 81907 ENTREZGENE
PANTHER PTHR28673 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TMEM108 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem108 PhenoGen
UniGene Mm.384704 ENTREZGENE
UniProt A0A1L1SSF6_MOUSE UniProtKB/TrEMBL
  Q571C0_MOUSE UniProtKB/TrEMBL
  Q8BHE4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q80WR9 UniProtKB/Swiss-Prot