Cdkn1c (cyclin dependent kinase inhibitor 1C) - Rat Genome Database

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Gene: Cdkn1c (cyclin dependent kinase inhibitor 1C) Mus musculus
Analyze
Symbol: Cdkn1c
Name: cyclin dependent kinase inhibitor 1C
RGD ID: 1322981
MGI Page MGI
Description: Predicted to enable protein kinase inhibitor activity. Acts upstream of or within several processes, including embryonic placenta morphogenesis; regulation of gene expression; and uterus development. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; extraembryonic component; genitourinary system; and sensory organ. Used to study Beckwith-Wiedemann syndrome and pre-eclampsia. Human ortholog(s) of this gene implicated in Beckwith-Wiedemann syndrome; IMAGe syndrome; and hyperinsulinism. Orthologous to human CDKN1C (cyclin dependent kinase inhibitor 1C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL024410; CDK; CDKI; cyclin dependent kinase inhibitor 1C (P57); cyclin-dependent kinase inhibitor 1C; cyclin-dependent kinase inhibitor 1C (P57); cyclin-dependent kinase inhibitor p57; Ki; Kip2; p57(kip2); p57K; p57Kip2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,012,076 - 143,014,735 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,012,076 - 143,014,787 (-)EnsemblGRCm39 Ensembl
GRCm387143,458,339 - 143,461,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,458,339 - 143,461,050 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,644,244 - 150,646,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,267,730 - 143,270,386 (-)NCBIMGSCv36mm8
Celera7143,214,045 - 143,216,756 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxynon-2-enal  (ISO)
4-nonylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
amphibole asbestos  (ISO)
anthracen-2-amine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
berberine  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calycosin  (ISO)
carbon nanotube  (EXP,ISO)
carmustine  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP,ISO)
Cuprizon  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
cytarabine  (ISO)
DDE  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethylstilbestrol  (EXP,ISO)
dimethylarsinic acid  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
emodin  (EXP)
ethanol  (EXP)
fenamidone  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
genistein  (EXP,ISO)
glycidol  (ISO)
harmine  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxyurea  (EXP)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoliquiritigenin  (EXP)
isotretinoin  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
lead diacetate  (ISO)
Licochalcone B  (ISO)
linalool  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium chloride  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
monobenzyl phthalate  (EXP)
monoethyl phthalate  (EXP)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel subsulfide  (ISO)
oxaliplatin  (ISO)
p-anisidine  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
pentanal  (ISO)
perfluorodecanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
pyrogallol  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sotorasib  (ISO)
sterigmatocystin  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
theophylline  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (EXP,ISO)
zearalenone  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IDA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abdominal wall morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bronchiole morphology  (IAGP)
abnormal bronchus morphology  (IAGP)
abnormal brown adipose tissue morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal digestive system development  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal duodenum morphology  (IAGP)
abnormal endochondral bone ossification  (IAGP)
abnormal female reproductive system morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gland morphology  (IAGP)
abnormal hard palate morphology  (IAGP)
abnormal hematopoietic stem cell physiology  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal ileum morphology  (IAGP)
abnormal imprinting  (IAGP)
abnormal interscapular fat pad morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal intramembranous bone ossification  (IAGP)
abnormal jejunum morphology  (IAGP)
abnormal kidney medulla development  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal kidney papilla morphology  (IAGP)
abnormal lens development  (IAGP)
abnormal lens epithelium morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone epiphysis morphology  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal male reproductive system morphology  (IAGP)
abnormal midbrain morphology  (IAGP)
abnormal placenta labyrinth morphology  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal prostate gland development  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal seminal vesicle development  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal soft palate morphology  (IAGP)
abnormal spine curvature  (IAGP)
abnormal spleen white pulp morphology  (IAGP)
abnormal spongiotrophoblast layer morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal testis development  (IAGP)
abnormal trophoblast giant cell morphology  (IAGP)
abnormal uterus development  (IAGP)
abnormal vertebrae morphology  (IAGP)
absent gastric milk in neonates  (IAGP)
absent jejunum  (IAGP)
cataract  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
cortical renal glomerulopathies  (IAGP)
cyanosis  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brown adipose tissue amount  (IAGP)
decreased fetal size  (IAGP)
decreased hematopoietic stem cell number  (IAGP)
decreased length of long bones  (IAGP)
decreased skeletal muscle mass  (IAGP)
delayed bone ossification  (IAGP)
delayed endochondral bone ossification  (IAGP)
delayed sexual maturation  (IAGP)
dysphagia  (IAGP)
edema  (IEA)
embryonic growth retardation  (IAGP)
enlarged adrenal glands  (IAGP)
enlarged placenta  (IAGP)
female infertility  (IAGP)
herniated abdominal wall  (IAGP)
hydrometra  (IAGP)
increased atretic ovarian follicle number  (IAGP)
increased diameter of long bones  (IAGP)
increased lens epithelium apoptosis  (IAGP)
increased midbrain apoptosis  (IAGP)
increased placenta weight  (IAGP)
increased skeletal muscle fiber size  (IAGP)
increased systemic arterial blood pressure  (IAGP)
increased systemic arterial systolic blood pressure  (IAGP)
increased urine protein level  (IAGP)
kidney papillary atrophy  (IAGP)
lens vacuoles  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
meteorism  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
omphalocele  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
paternal imprinting  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
respiratory distress  (IAGP)
rib bifurcation  (IAGP)
short gestation period  (IAGP)
short limbs  (IAGP)
short sternum  (IAGP)
small inner medullary pyramid  (IAGP)
split sternum  (IAGP)
thin diaphragm muscle  (IAGP)
thrombocytopenia  (IAGP)
uterus atresia  (IAGP)
uterus atrophy  (IAGP)
vagina atresia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. The degradation of cell cycle regulators by SKP2/CKS1 ubiquitin ligase is genetically controlled in rodent liver cancer and contributes to determine the susceptibility to the disease. Calvisi DF, etal., Int J Cancer. 2009 Jun 16.
2. Down-regulation of the cyclin-dependent kinase inhibitor p57 is mediated by Jab1/Csn5 in hepatocarcinogenesis. Guo H, etal., Hepatology. 2016 Mar;63(3):898-913. doi: 10.1002/hep.28372. Epub 2016 Jan 14.
3. p57(KIP2) expression in normal islet cells and in hyperinsulinism of infancy. Kassem SA, etal., Diabetes. 2001 Dec;50(12):2763-9.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Epigenetic silencing of cell cycle regulatory genes during 3-methylcholanthrene and diethylnitrosamine-induced multistep rat lung cancer. Liu WB, etal., Mol Carcinog. 2010 Jun;49(6):556-65. doi: 10.1002/mc.20621.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. The Pezcoller lecture: cancer cell cycles revisited. Sherr CJ Cancer Res. 2000 Jul 15;60(14):3689-95.
14. Changes in polypeptide pattern of rat liver cells during chemical hepatocarcinogenesis. Sugioka Y, etal., Cancer Res. 1985 Jan;45(1):365-78.
Additional References at PubMed
PMID:1971786   PMID:7550351   PMID:7671812   PMID:7729683   PMID:7729684   PMID:9136926   PMID:9144284   PMID:9260520   PMID:9341892   PMID:9363677   PMID:9448292   PMID:9467008  
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PMID:10369881   PMID:10446277   PMID:10545601   PMID:10601037   PMID:10652278   PMID:10691133   PMID:10731669   PMID:10779549   PMID:10903183   PMID:10903843   PMID:10907850   PMID:10922068  
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PMID:11528397   PMID:11668390   PMID:11677056   PMID:11691837   PMID:11737597   PMID:11840349   PMID:11850820   PMID:11891335   PMID:11934864   PMID:12072567   PMID:12112462   PMID:12130660  
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PMID:12925736   PMID:12963725   PMID:14512017   PMID:14522949   PMID:14671317   PMID:14681479   PMID:14742445   PMID:15073151   PMID:15124025   PMID:15143159   PMID:15163367   PMID:15215868  
PMID:15294951   PMID:15327781   PMID:15342473   PMID:15459106   PMID:15475262   PMID:15516931   PMID:15516932   PMID:15640248   PMID:15647320   PMID:15664414   PMID:15665276   PMID:15730892  
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PMID:17182038   PMID:17218603   PMID:17245608   PMID:17336907   PMID:17339267   PMID:17428829   PMID:17464323   PMID:17467682   PMID:17517131   PMID:17585069   PMID:17709399   PMID:17901120  
PMID:17965053   PMID:18039842   PMID:18079696   PMID:18094249   PMID:18206965   PMID:18213584   PMID:18218983   PMID:18312674   PMID:18430730   PMID:18448610   PMID:18455718   PMID:18483241  
PMID:18513743   PMID:18554416   PMID:18588871   PMID:18625706   PMID:18652815   PMID:18652817   PMID:18667463   PMID:18757513   PMID:18787067   PMID:18973680   PMID:18978188   PMID:19007884  
PMID:19015235   PMID:19060336   PMID:19088086   PMID:19092943   PMID:19139274   PMID:19144718   PMID:19158303   PMID:19170105   PMID:19228596   PMID:19229324   PMID:19276117   PMID:19334279  
PMID:19449303   PMID:19515997   PMID:19541765   PMID:19542352   PMID:19570515   PMID:19570848   PMID:19596361   PMID:19623612   PMID:19641124   PMID:19692620   PMID:19762426   PMID:19769959  
PMID:19782673   PMID:19794138   PMID:19799774   PMID:19835853   PMID:19854167   PMID:19864318   PMID:19884348   PMID:19889636   PMID:20013826   PMID:20035012   PMID:20062522   PMID:20105280  
PMID:20132320   PMID:20140255   PMID:20168089   PMID:20181838   PMID:20193675   PMID:20372090   PMID:20417196   PMID:20459838   PMID:20506362   PMID:20573698   PMID:20596014   PMID:20713518  
PMID:20713691   PMID:20944551   PMID:21074523   PMID:21138975   PMID:21192082   PMID:21238448   PMID:21245411   PMID:21248112   PMID:21267068   PMID:21354127   PMID:21364918   PMID:21451052  
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PMID:28428215   PMID:28535371   PMID:28560351   PMID:28791750   PMID:28857482   PMID:28893950   PMID:28926866   PMID:28939666   PMID:28943313   PMID:29137925   PMID:29284139   PMID:29357412  
PMID:29360039   PMID:29530881   PMID:29578405   PMID:29596840   PMID:29632530   PMID:30014245   PMID:30096149   PMID:30158284   PMID:30284969   PMID:30428088   PMID:30485816   PMID:30664861  
PMID:30718289   PMID:30771304   PMID:30979723   PMID:31112136   PMID:31345937   PMID:31624071   PMID:31634536   PMID:31847788   PMID:31913463   PMID:31924768   PMID:32024956   PMID:32243674  
PMID:32267063   PMID:32439764   PMID:32586976   PMID:32731332   PMID:32892421   PMID:33302058   PMID:33305192   PMID:33597191   PMID:33795686   PMID:34246625   PMID:34321999   PMID:34571841  
PMID:34746147   PMID:34878095   PMID:34926465   PMID:35084365   PMID:35314700   PMID:35472217   PMID:35523142   PMID:35770551   PMID:35905741   PMID:35951005   PMID:36092713   PMID:36445780  
PMID:36476878   PMID:36633189   PMID:36791055   PMID:36880956   PMID:37327110   PMID:37360688   PMID:37390208   PMID:37723138   PMID:38095908   PMID:38355793   PMID:38609446   PMID:38750011  


Genomics

Comparative Map Data
Cdkn1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,012,076 - 143,014,735 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,012,076 - 143,014,787 (-)EnsemblGRCm39 Ensembl
GRCm387143,458,339 - 143,461,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,458,339 - 143,461,050 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,644,244 - 150,646,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,267,730 - 143,270,386 (-)NCBIMGSCv36mm8
Celera7143,214,045 - 143,216,756 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.22NCBI
CDKN1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,883,218 - 2,885,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,883,213 - 2,885,775 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,904,448 - 2,907,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,861,441 - 2,863,551 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,861,440 - 2,863,537NCBI
Celera112,939,161 - 2,941,708 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef112,692,706 - 2,695,485 (-)NCBIHuRef
CHM1_1112,903,367 - 2,905,909 (-)NCBICHM1_1
T2T-CHM13v2.0112,972,459 - 2,975,017 (-)NCBIT2T-CHM13v2.0
Cdkn1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,084,801 - 208,087,680 (-)NCBIGRCr8
mRatBN7.21198,655,394 - 198,658,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,655,407 - 198,658,048 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,034,074 - 207,036,728 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,120,600 - 214,123,254 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,794,746 - 206,797,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,661,067 - 216,663,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,661,080 - 216,663,721 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,521,098 - 223,524,053 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,835,215 - 203,837,844 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1196,223,813 - 196,226,467 (-)NCBICelera
Cytogenetic Map1q42NCBI
Cdkn1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542214,576,971 - 14,578,868 (-)NCBIChiLan1.0ChiLan1.0
CDKN1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,294,311 - 5,296,907 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,506,267 - 4,508,860 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,908,537 - 2,911,134 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,937,122 - 2,938,022 (-)NCBIpanpan1.1PanPan1.1panPan2
CDKN1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,860,636 - 46,861,697 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,470,401 - 45,472,911 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,540,589 - 47,543,107 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11846,985,894 - 46,988,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,568,604 - 46,571,113 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,315,144 - 47,317,648 (-)NCBIUU_Cfam_GSD_1.0
Cdkn1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049473,080,687 - 3,082,266 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367941,023,891 - 1,025,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDKN1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,019,830 - 2,021,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,019,391 - 2,022,092 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDKN1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,696,382 - 2,699,054 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,696,233 - 2,699,028 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,897,211 - 99,899,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdkn1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,642,012 - 15,645,664 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,642,991 - 15,645,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdkn1c
58 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:502
Count of miRNA genes:186
Interacting mature miRNAs:218
Transcripts:ENSMUST00000037287, ENSMUST00000167912
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse

Markers in Region
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv377150,645,750 - 150,646,369UniSTSGRCm37
MGSCv377150,645,118 - 150,645,769UniSTSGRCm37
MGSCv377150,645,941 - 150,646,133UniSTSGRCm37
MGSCv377150,645,119 - 150,645,768UniSTSGRCm37
MGSCv377150,644,415 - 150,645,147UniSTSGRCm37
MGSCv377150,645,997 - 150,646,784UniSTSGRCm37
MGSCv377150,645,130 - 150,646,133UniSTSGRCm37
MGSCv377150,645,751 - 150,646,369UniSTSGRCm37
MGSCv377150,644,669 - 150,644,880UniSTSGRCm37
MGSCv377150,644,729 - 150,644,879UniSTSGRCm37
MGSCv377150,644,322 - 150,645,804UniSTSGRCm37
Celera7143,214,920 - 143,215,569UniSTS
Celera7143,215,551 - 143,216,170UniSTS
Celera7143,214,216 - 143,214,948UniSTS
Celera7143,214,931 - 143,215,934UniSTS
Celera7143,215,798 - 143,216,585UniSTS
Celera7143,214,123 - 143,215,605UniSTS
Celera7143,214,470 - 143,214,681UniSTS
Celera7143,215,742 - 143,215,934UniSTS
Celera7143,214,530 - 143,214,680UniSTS
Celera7143,215,552 - 143,216,170UniSTS
Celera7143,214,919 - 143,215,570UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
cM Map769.49UniSTS
cM Map769.49UniSTS
cM Map769.49UniSTS
RH125540  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,750 - 143,458,913UniSTSGRCm38
MGSCv377150,644,655 - 150,644,818UniSTSGRCm37
Celera7143,214,456 - 143,214,619UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
PMC187562P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,460,922 - 143,461,312UniSTSGRCm38
MGSCv377150,646,827 - 150,647,217UniSTSGRCm37
Celera7143,216,628 - 143,217,017UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
PMC307617P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,806 - 143,459,003UniSTSGRCm38
MGSCv377150,644,711 - 150,644,908UniSTSGRCm37
Celera7143,214,512 - 143,214,709UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
MARC_54883-54884:1155673702:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,460,405 - 143,460,989UniSTSGRCm38
MGSCv377150,646,310 - 150,646,894UniSTSGRCm37
Celera7143,216,111 - 143,216,695UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,161 - 143,459,869UniSTSGRCm38
Celera7143,214,867 - 143,215,575UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,417 - 143,459,899UniSTSGRCm38
MGSCv377150,644,322 - 150,645,804UniSTSGRCm37
Celera7143,214,123 - 143,215,605UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,460,092 - 143,460,879UniSTSGRCm38
MGSCv377150,645,997 - 150,646,784UniSTSGRCm37
Celera7143,215,798 - 143,216,585UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,225 - 143,460,228UniSTSGRCm38
MGSCv377150,645,130 - 150,646,133UniSTSGRCm37
Celera7143,214,931 - 143,215,934UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,846 - 143,460,464UniSTSGRCm38
MGSCv377150,645,751 - 150,646,369UniSTSGRCm37
Celera7143,215,552 - 143,216,170UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,764 - 143,458,975UniSTSGRCm38
MGSCv377150,644,669 - 150,644,880UniSTSGRCm37
Celera7143,214,470 - 143,214,681UniSTS
Cytogenetic Map7F5UniSTS
cM Map769.49UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,824 - 143,458,974UniSTSGRCm38
MGSCv377150,644,729 - 150,644,879UniSTSGRCm37
Celera7143,214,530 - 143,214,680UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,214 - 143,459,863UniSTSGRCm38
MGSCv377150,645,119 - 150,645,768UniSTSGRCm37
Celera7143,214,920 - 143,215,569UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,458,510 - 143,459,242UniSTSGRCm38
MGSCv377150,644,415 - 150,645,147UniSTSGRCm37
Celera7143,214,216 - 143,214,948UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,460,036 - 143,460,228UniSTSGRCm38
MGSCv377150,645,941 - 150,646,133UniSTSGRCm37
Celera7143,215,742 - 143,215,934UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,213 - 143,459,864UniSTSGRCm38
MGSCv377150,645,118 - 150,645,769UniSTSGRCm37
Celera7143,214,919 - 143,215,570UniSTS
Cytogenetic Map7F5UniSTS
Cdkn1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387143,459,845 - 143,460,464UniSTSGRCm38
MGSCv377150,645,750 - 150,646,369UniSTSGRCm37
Celera7143,215,551 - 143,216,170UniSTS
Cytogenetic Map7F5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001354981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA986859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC023248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF160190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ175313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U22399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000037287   ⟹   ENSMUSP00000037302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,012,079 - 143,014,787 (-)Ensembl
GRCm38.p6 Ensembl7143,458,342 - 143,461,050 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167912   ⟹   ENSMUSP00000128828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,012,076 - 143,014,733 (-)Ensembl
GRCm38.p6 Ensembl7143,458,339 - 143,460,996 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207910   ⟹   ENSMUSP00000147142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,012,559 - 143,013,910 (-)Ensembl
GRCm38.p6 Ensembl7143,458,822 - 143,460,173 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,012,459 - 143,013,048 (-)Ensembl
GRCm38.p6 Ensembl7143,458,722 - 143,459,311 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208137   ⟹   ENSMUSP00000147116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7143,012,635 - 143,013,899 (-)Ensembl
GRCm38.p6 Ensembl7143,458,898 - 143,460,162 (-)Ensembl
RefSeq Acc Id: NM_001161624   ⟹   NP_001155096
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
GRCm387143,458,339 - 143,461,050 (-)NCBI
MGSCv377150,644,244 - 150,646,955 (-)RGD
Celera7143,214,045 - 143,216,756 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001354981   ⟹   NP_001341910
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
GRCm387143,458,339 - 143,461,050 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001412230   ⟹   NP_001399159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412231   ⟹   NP_001399160
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412232   ⟹   NP_001399161
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412233   ⟹   NP_001399162
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412234   ⟹   NP_001399163
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412235   ⟹   NP_001399164
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412236   ⟹   NP_001399165
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412237   ⟹   NP_001399166
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412238   ⟹   NP_001399167
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412239   ⟹   NP_001399168
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412240   ⟹   NP_001399169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412241   ⟹   NP_001399170
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412242   ⟹   NP_001399171
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412243   ⟹   NP_001399172
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412244   ⟹   NP_001399173
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412245   ⟹   NP_001399174
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_001412246   ⟹   NP_001399175
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
RefSeq Acc Id: NM_009876   ⟹   NP_034006
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397143,012,076 - 143,014,735 (-)NCBI
GRCm387143,458,339 - 143,461,050 (-)NCBI
MGSCv377150,644,244 - 150,646,955 (-)RGD
Celera7143,214,045 - 143,216,756 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001155096 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341910 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399159 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399160 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399161 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399162 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399163 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399164 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399165 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399166 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399167 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399168 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399169 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399170 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399171 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399172 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399173 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399174 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399175 (Get FASTA)   NCBI Sequence Viewer  
  NP_034006 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA85096 (Get FASTA)   NCBI Sequence Viewer  
  AAC52186 (Get FASTA)   NCBI Sequence Viewer  
  AAF00983 (Get FASTA)   NCBI Sequence Viewer  
  AAH05412 (Get FASTA)   NCBI Sequence Viewer  
  BAC37031 (Get FASTA)   NCBI Sequence Viewer  
  CAC16402 (Get FASTA)   NCBI Sequence Viewer  
  EDL18207 (Get FASTA)   NCBI Sequence Viewer  
  EDL18208 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000037302
  ENSMUSP00000037302.7
  ENSMUSP00000128828
  ENSMUSP00000128828.2
  ENSMUSP00000147116.2
  ENSMUSP00000147142.2
GenBank Protein P49919 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034006   ⟸   NM_009876
- Peptide Label: isoform 2
- UniProtKB: Q791X1 (UniProtKB/TrEMBL),   Q91V06 (UniProtKB/TrEMBL),   Q8BP34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155096   ⟸   NM_001161624
- Peptide Label: isoform 1
- UniProtKB: G3UW61 (UniProtKB/Swiss-Prot),   P49919 (UniProtKB/Swiss-Prot),   Q8BP34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001341910   ⟸   NM_001354981
- Peptide Label: isoform 2
- UniProtKB: Q791X1 (UniProtKB/TrEMBL),   Q91V06 (UniProtKB/TrEMBL),   Q8BP34 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000147116   ⟸   ENSMUST00000208137
Ensembl Acc Id: ENSMUSP00000037302   ⟸   ENSMUST00000037287
Ensembl Acc Id: ENSMUSP00000147142   ⟸   ENSMUST00000207910
Ensembl Acc Id: ENSMUSP00000128828   ⟸   ENSMUST00000167912
RefSeq Acc Id: NP_001399172   ⟸   NM_001412243
- Peptide Label: isoform 7
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399175   ⟸   NM_001412246
- Peptide Label: isoform 7
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399169   ⟸   NM_001412240
- Peptide Label: isoform 6
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399167   ⟸   NM_001412238
- Peptide Label: isoform 2
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL),   Q791X1 (UniProtKB/TrEMBL),   Q91V06 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399165   ⟸   NM_001412236
- Peptide Label: isoform 4
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399163   ⟸   NM_001412234
- Peptide Label: isoform 4
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399174   ⟸   NM_001412245
- Peptide Label: isoform 7
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399173   ⟸   NM_001412244
- Peptide Label: isoform 7
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399170   ⟸   NM_001412241
- Peptide Label: isoform 6
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399171   ⟸   NM_001412242
- Peptide Label: isoform 6
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399166   ⟸   NM_001412237
- Peptide Label: isoform 2
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL),   Q791X1 (UniProtKB/TrEMBL),   Q91V06 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399164   ⟸   NM_001412235
- Peptide Label: isoform 4
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399162   ⟸   NM_001412233
- Peptide Label: isoform 4
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399168   ⟸   NM_001412239
- Peptide Label: isoform 5
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399161   ⟸   NM_001412232
- Peptide Label: isoform 1
- UniProtKB: P49919 (UniProtKB/Swiss-Prot),   G3UW61 (UniProtKB/Swiss-Prot),   Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399160   ⟸   NM_001412231
- Peptide Label: isoform 3
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399159   ⟸   NM_001412230
- Peptide Label: isoform 3
- UniProtKB: Q8BP34 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49919-F1-model_v2 AlphaFold P49919 1-348 view protein structure

Promoters
RGD ID:8666245
Promoter ID:EPDNEW_M11154
Type:multiple initiation site
Name:Cdkn1c_1
Description:Mus musculus cyclin-dependent kinase inhibitor 1C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387143,460,996 - 143,461,056EPDNEW
RGD ID:6840820
Promoter ID:MM_KWN:53386
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:UC009KPD.1,   UC009KPE.1,   UC009KPF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367150,646,544 - 150,647,044 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104564 AgrOrtholog
Ensembl Genes ENSMUSG00000037664 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037287 ENTREZGENE
  ENSMUST00000037287.8 UniProtKB/Swiss-Prot
  ENSMUST00000167912 ENTREZGENE
  ENSMUST00000167912.9 UniProtKB/Swiss-Prot
  ENSMUST00000207910.2 UniProtKB/TrEMBL
  ENSMUST00000208137.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.365.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDI_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12577 UniProtKB/Swiss-Prot
MGD MGI:104564 ENTREZGENE
NCBI Gene 12577 ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10265:SF44 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdkn1c PhenoGen
UniProt A0A140LJ83_MOUSE UniProtKB/TrEMBL
  A0A140LJA8_MOUSE UniProtKB/TrEMBL
  CDN1C_MOUSE UniProtKB/Swiss-Prot
  G3UW61 ENTREZGENE
  P49919 ENTREZGENE
  Q791X1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BP34 ENTREZGENE, UniProtKB/TrEMBL
  Q91V06 ENTREZGENE
UniProt Secondary G3UW61 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Cdkn1c  cyclin dependent kinase inhibitor 1C  Cdkn1c  cyclin dependent kinase inhibitor 1C (P57)  Symbol and/or name change 5135510 APPROVED
2023-05-02 Cdkn1c  cyclin dependent kinase inhibitor 1C (P57)  Cdkn1c  cyclin-dependent kinase inhibitor 1C (P57)  Symbol and/or name change 5135510 APPROVED