Vps53 (VPS53 GARP complex subunit) - Rat Genome Database
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Gene: Vps53 (VPS53 GARP complex subunit) Mus musculus
Analyze
Symbol: Vps53
Name: VPS53 GARP complex subunit
RGD ID: 1322829
MGI Page MGI
Description: Predicted to be involved in endocytic recycling; lysosomal transport; and retrograde transport, endosome to Golgi. Predicted to localize to several cellular components, including EARP complex; Golgi apparatus; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2E. Orthologous to human VPS53 (VPS53 subunit of GARP complex); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2010002A08Rik; 2310040I21Rik; 3100002B05Rik; Hccs1; RP23-147P4.2; vacuolar protein sorting 53; vacuolar protein sorting 53 (yeast); vacuolar protein sorting-associated protein 53 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,937,052 - 76,070,464 (-)NCBIGRCm39mm39
GRCm381176,046,226 - 76,179,638 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,046,226 - 76,179,647 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,859,728 - 75,993,132 (-)NCBIGRCm37mm9NCBIm37
MGSCv361175,862,421 - 75,995,825 (-)NCBImm8
Celera1183,555,285 - 83,692,488 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18511934  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:23708095   PMID:24457600   PMID:25799061   PMID:30409884   PMID:32325033   PMID:32968282  


Genomics

Comparative Map Data
Vps53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,937,052 - 76,070,464 (-)NCBIGRCm39mm39
GRCm381176,046,226 - 76,179,638 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,046,226 - 76,179,647 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,859,728 - 75,993,132 (-)NCBIGRCm37mm9NCBIm37
MGSCv361175,862,421 - 75,995,825 (-)NCBImm8
Celera1183,555,285 - 83,692,488 (-)NCBICelera
Cytogenetic Map11B5NCBI
VPS53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl17508,668 - 721,717 (-)EnsemblGRCh38hg38GRCh38
GRCh3817508,668 - 714,846 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3717411,908 - 618,096 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh3717411,908 - 618,079 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3617382,698 - 564,758 (-)NCBINCBI36hg18NCBI36
Celera17423,924 - 629,862 (-)NCBI
Cytogenetic Map17p13.3NCBI
HuRef17325,008 - 528,642 (-)NCBIHuRef
CHM1_117418,907 - 623,396 (-)NCBICHM1_1
Vps53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21060,919,820 - 61,038,674 (-)NCBI
Rnor_6.0 Ensembl1064,222,276 - 64,341,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01064,218,596 - 64,341,064 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01063,672,733 - 63,793,858 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,410,886 - 63,535,682 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11063,424,683 - 63,543,200 (-)NCBI
Celera1059,935,404 - 60,054,107 (-)NCBICelera
Cytogenetic Map10q24NCBI
Vps53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554812,130,888 - 2,264,924 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554812,130,669 - 2,265,065 (-)NCBIChiLan1.0ChiLan1.0
LOC100968477
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.117416,136 - 604,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17414,782 - 604,705 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v017400,048 - 576,119 (-)NCBIMhudiblu_PPA_v0panPan3
VPS53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl945,074,100 - 45,214,066 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1945,074,066 - 45,239,569 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Vps53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365387,067,332 - 7,207,852 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1247,125,248 - 47,291,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11247,141,749 - 47,291,169 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,308,850 - 49,456,068 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS53
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116302,771 - 464,572 (-)NCBI
ChlSab1.1 Ensembl16303,414 - 464,574 (-)Ensembl
Vps53
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247863,614,775 - 3,779,644 (+)NCBI

Position Markers
BB162755  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,170,965 - 76,171,060UniSTSGRCm38
MGSCv371175,984,467 - 75,984,562UniSTSGRCm37
Celera1183,683,722 - 83,683,817UniSTS
Cytogenetic Map11B4UniSTS
Whitehead/MRC_RH11940.16UniSTS
36.MMHAP4FRD12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,159,641 - 76,159,795UniSTSGRCm38
MGSCv371175,973,143 - 75,973,297UniSTSGRCm37
Cytogenetic Map11B4UniSTS
Whitehead_YAC11 UniSTS
D11Mit321  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,098,373 - 76,098,570UniSTSGRCm38
MGSCv371175,911,875 - 75,912,072UniSTSGRCm37
Celera1183,607,422 - 83,607,619UniSTS
Cytogenetic Map11B4UniSTS
cM Map1143.0UniSTS
Whitehead Genetic1139.3UniSTS
Whitehead/MRC_RH11938.1UniSTS
Whitehead_YAC11 UniSTS
D11Mit7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,087,654 - 76,087,800UniSTSGRCm38
MGSCv371175,901,156 - 75,901,302UniSTSGRCm37
Celera1183,596,711 - 83,596,857UniSTS
Cytogenetic Map11B4UniSTS
cM Map1428.4UniSTS
cM Map1144.3UniSTS
Whitehead Genetic1140.4UniSTS
Whitehead_YAC11 UniSTS
D11Bhm25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,101,924 - 76,102,198UniSTSGRCm38
MGSCv371175,915,426 - 75,915,700UniSTSGRCm37
Celera1183,610,968 - 83,611,242UniSTS
Cytogenetic Map11B4UniSTS
cM Map1144.31UniSTS
D11Bhm27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,153,990 - 76,154,137UniSTSGRCm38
MGSCv371175,967,492 - 75,967,639UniSTSGRCm37
Cytogenetic Map11B4UniSTS
cM Map1144.37UniSTS
D11Bhm28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,165,031 - 76,165,221UniSTSGRCm38
MGSCv371175,978,533 - 75,978,723UniSTSGRCm37
Celera1183,677,589 - 83,677,761UniSTS
Cytogenetic Map11B4UniSTS
cM Map1144.4UniSTS
D11Bhm26  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,139,906 - 76,140,102UniSTSGRCm38
GRCm38323,949,704 - 23,949,899UniSTSGRCm38
MGSCv371175,953,408 - 75,953,604UniSTSGRCm37
MGSCv37323,848,626 - 23,848,821UniSTSGRCm37
Celera1183,649,020 - 83,649,216UniSTS
Celera323,943,585 - 23,943,780UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map3A3UniSTS
cM Map1144.34UniSTS
D10Chm174  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera1183,677,357 - 83,678,043UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2274
Count of miRNA genes:805
Interacting mature miRNAs:1052
Transcripts:ENSMUST00000056601, ENSMUST00000094015, ENSMUST00000108419, ENSMUST00000129256, ENSMUST00000140886, ENSMUST00000141773, ENSMUST00000143163, ENSMUST00000143459, ENSMUST00000163878, ENSMUST00000166084, ENSMUST00000166436, ENSMUST00000166752, ENSMUST00000167114, ENSMUST00000169734, ENSMUST00000170143, ENSMUST00000170730
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_157296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK008026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA325661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000056601   ⟹   ENSMUSP00000061317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,046,226 - 76,179,647 (-)Ensembl
RefSeq Acc Id: ENSMUST00000094015   ⟹   ENSMUSP00000091554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,046,297 - 76,179,617 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108419   ⟹   ENSMUSP00000104057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,046,296 - 76,179,624 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129256   ⟹   ENSMUSP00000126125
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,176,959 - 76,179,638 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,170,514 - 76,179,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,121,568 - 76,138,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143163
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,062,041 - 76,092,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,134,432 - 76,154,969 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163878   ⟹   ENSMUSP00000128856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,117,059 - 76,179,532 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,121,563 - 76,175,792 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166436   ⟹   ENSMUSP00000131387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,117,674 - 76,166,201 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166752   ⟹   ENSMUSP00000129159
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,062,985 - 76,179,499 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167114   ⟹   ENSMUSP00000131663
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,062,980 - 76,179,499 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169734   ⟹   ENSMUSP00000130499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,062,985 - 76,179,516 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,121,447 - 76,179,587 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170730   ⟹   ENSMUSP00000127364
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,136,199 - 76,179,634 (-)Ensembl
RefSeq Acc Id: NM_001364738   ⟹   NP_001351667
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,061,336 - 76,070,464 (-)NCBI
GRCm381176,170,510 - 76,179,638 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026664   ⟹   NP_080940
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,937,052 - 76,070,464 (-)NCBI
GRCm381176,046,226 - 76,179,638 (-)NCBI
MGSCv371175,859,728 - 75,993,132 (-)RGD
Celera1183,555,285 - 83,692,488 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_157296
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,067,784 - 76,070,464 (-)NCBI
GRCm381176,176,958 - 76,179,638 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080940   ⟸   NM_026664
- Peptide Label: isoform 1
- UniProtKB: Q8CCB4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351667   ⟸   NM_001364738
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000128856   ⟸   ENSMUST00000163878
RefSeq Acc Id: ENSMUSP00000104057   ⟸   ENSMUST00000108419
RefSeq Acc Id: ENSMUSP00000131387   ⟸   ENSMUST00000166436
RefSeq Acc Id: ENSMUSP00000129159   ⟸   ENSMUST00000166752
RefSeq Acc Id: ENSMUSP00000127364   ⟸   ENSMUST00000170730
RefSeq Acc Id: ENSMUSP00000126125   ⟸   ENSMUST00000129256
RefSeq Acc Id: ENSMUSP00000061317   ⟸   ENSMUST00000056601
RefSeq Acc Id: ENSMUSP00000091554   ⟸   ENSMUST00000094015
RefSeq Acc Id: ENSMUSP00000131663   ⟸   ENSMUST00000167114
RefSeq Acc Id: ENSMUSP00000130499   ⟸   ENSMUST00000169734
Protein Domains
Vps53_N

Promoters
RGD ID:6822444
Promoter ID:MM_KWN:8550
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:ENSMUST00000094015,   OTTMUST00000014057
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361175,968,171 - 75,968,671 (-)MPROMDB
RGD ID:6822474
Promoter ID:MM_KWN:8551
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000108419,   OTTMUST00000014053,   OTTMUST00000014054,   OTTMUST00000014060,   OTTMUST00000074144,   UC007KFD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361175,992,481 - 75,993,852 (-)MPROMDB
RGD ID:8675582
Promoter ID:EPDNEW_M15822
Type:initiation region
Name:Vps53_1
Description:Mus musculus VPS53 GARP complex subunit , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381176,179,634 - 76,179,694EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915549 AgrOrtholog
Ensembl Genes ENSMUSG00000017288 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000061317 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000091554 UniProtKB/TrEMBL
  ENSMUSP00000104057 UniProtKB/Swiss-Prot
  ENSMUSP00000126125 UniProtKB/TrEMBL
  ENSMUSP00000127364 UniProtKB/TrEMBL
  ENSMUSP00000128856 UniProtKB/TrEMBL
  ENSMUSP00000129159 UniProtKB/TrEMBL
  ENSMUSP00000130499 UniProtKB/TrEMBL
  ENSMUSP00000131387 UniProtKB/TrEMBL
  ENSMUSP00000131663 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000056601 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000094015 UniProtKB/TrEMBL
  ENSMUST00000108419 UniProtKB/Swiss-Prot
  ENSMUST00000129256 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000140886 ENTREZGENE
  ENSMUST00000163878 UniProtKB/TrEMBL
  ENSMUST00000166436 UniProtKB/TrEMBL
  ENSMUST00000166752 UniProtKB/TrEMBL
  ENSMUST00000167114 UniProtKB/TrEMBL
  ENSMUST00000169734 UniProtKB/TrEMBL
  ENSMUST00000170730 UniProtKB/TrEMBL
InterPro Vps53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps53_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68299 UniProtKB/Swiss-Prot
MGD MGI:1915549 ENTREZGENE
NCBI Gene 68299 ENTREZGENE
PANTHER PTHR12820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Vps53_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vps53 PhenoGen
UniProt E9PWD1_MOUSE UniProtKB/TrEMBL
  E9PXG9_MOUSE UniProtKB/TrEMBL
  E9PYD3_MOUSE UniProtKB/TrEMBL
  E9Q124_MOUSE UniProtKB/TrEMBL
  E9Q3C3_MOUSE UniProtKB/TrEMBL
  E9Q648_MOUSE UniProtKB/TrEMBL
  E9Q8C4_MOUSE UniProtKB/TrEMBL
  F6Z4G7_MOUSE UniProtKB/TrEMBL
  Q3TJT1_MOUSE UniProtKB/TrEMBL
  Q3TLZ3_MOUSE UniProtKB/TrEMBL
  Q3TX19_MOUSE UniProtKB/TrEMBL
  Q3UDN2_MOUSE UniProtKB/TrEMBL
  Q8CCB4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8C7U0 UniProtKB/Swiss-Prot
  Q8CIA1 UniProtKB/Swiss-Prot
  Q9CX82 UniProtKB/Swiss-Prot
  Q9D6T7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 Vps53  VPS53 GARP complex subunit    vacuolar protein sorting 53 (yeast)  Symbol and/or name change 5135510 APPROVED