Tent5a (terminal nucleotidyltransferase 5A) - Rat Genome Database

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Gene: Tent5a (terminal nucleotidyltransferase 5A) Mus musculus
Analyze
Symbol: Tent5a
Name: terminal nucleotidyltransferase 5A
RGD ID: 1322813
MGI Page MGI
Description: Enables poly(A) RNA polymerase activity. Involved in positive regulation of bone mineralization and positive regulation of osteoblast differentiation. Acts upstream of or within response to bacterium. Located in cytoplasm. Is expressed in several structures, including heart; jaw; liver; oral epithelium; and skeleton. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; osteoarthritis; and osteogenesis imperfecta type 18. Orthologous to human TENT5A (terminal nucleotidyltransferase 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BAP0; BAP014; D930050G01Rik; Fam4; Fam46a; family with sequence similarity 46, member A; hypothetical protein LOC212943; uncharacterized protein LOC212943
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39985,202,492 - 85,209,203 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl985,202,492 - 85,209,401 (-)EnsemblGRCm39 Ensembl
GRCm38985,320,439 - 85,327,150 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl985,320,439 - 85,327,348 (-)EnsemblGRCm38mm10GRCm38
MGSCv37985,214,046 - 85,220,757 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36985,117,157 - 85,124,012 (-)NCBIMGSCv36mm8
Celera982,403,616 - 82,410,396 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buta-1,3-diene  (EXP)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dibutyl phthalate  (ISO)
diethyl maleate  (ISO)
dioxygen  (EXP)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
etoposide  (ISO)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
leflunomide  (ISO)
lidocaine  (ISO)
methamphetamine  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
niclosamide  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH 23390  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
torcetrapib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone structure  (IEA)
abnormal calcaneum morphology  (IAGP)
abnormal cranium morphology  (IEA)
abnormal deltoid tuberosity morphology  (IAGP)
abnormal femur morphology  (IAGP)
abnormal fibula morphology  (IEA)
abnormal gait  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal intramembranous bone ossification  (IAGP)
abnormal ischium morphology  (IAGP)
abnormal joint morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal mandible morphology  (IEA)
abnormal pelvic girdle bone morphology  (IEA)
abnormal radius morphology  (IEA)
abnormal rib morphology  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal spine curvature  (IEA)
abnormal thoracic cage morphology  (IAGP)
abnormal tibia morphology  (IAGP)
abnormal tooth morphology  (IEA)
abnormal ulna morphology  (IEA)
abnormal vertebral column morphology  (IAGP)
absent bone trabeculae  (IAGP)
decreased body height  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IEA)
decreased circulating glucose level  (IEA)
decreased circulating serum albumin level  (IEA)
decreased exploration in new environment  (IEA)
decreased femur compact bone thickness  (IAGP)
decreased locomotor activity  (IEA)
decreased Ly6C-positive mature NK cell number  (IEA)
decreased lymphocyte cell number  (IEA)
decreased respiratory quotient  (IEA)
delayed bone ossification  (IAGP)
enhanced cued conditioning behavior  (IEA)
fragile skeleton  (IAGP)
impaired righting response  (IEA)
increased alkaline phosphatase activity  (IAGP)
increased anxiety-related response  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating potassium level  (IEA)
increased diameter of femur  (IAGP)
increased diameter of humerus  (IAGP)
increased freezing behavior  (IEA)
increased granulocyte number  (IEA)
increased leukocyte cell number  (IEA)
increased long bone epiphyseal plate size  (IAGP)
increased monocyte cell number  (IEA)
increased neutrophil cell number  (IEA)
lethality, incomplete penetrance  (IAGP)
scoliosis  (IEA)
short femur  (IAGP)
short humerus  (IAGP)
short ribs  (IAGP)
short tibia  (IEA)
small cranium  (IAGP)
small ischium  (IAGP)
small scapula  (IAGP)
thin neurocranium  (IAGP)
thrombocytosis  (IEA)
transmission ratio distortion  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6. Etokebe GE, etal., J Orthop Res. 2015 Jan;33(1):56-62. doi: 10.1002/jor.22738. Epub 2014 Sep 18.
2. Association of the FAM46A gene VNTRs and BAG6 rs3117582 SNP with non small cell lung cancer (NSCLC) in Croatian and Norwegian populations. Etokebe GE, etal., PLoS One. 2015 Apr 17;10(4):e0122651. doi: 10.1371/journal.pone.0122651. eCollection 2015.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:19740458   PMID:21267068   PMID:21873635  
PMID:22527485   PMID:23012479   PMID:26803617   PMID:28378742   PMID:29358272   PMID:33882302   PMID:36383655  


Genomics

Comparative Map Data
Tent5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39985,202,492 - 85,209,203 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl985,202,492 - 85,209,401 (-)EnsemblGRCm39 Ensembl
GRCm38985,320,439 - 85,327,150 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl985,320,439 - 85,327,348 (-)EnsemblGRCm38mm10GRCm38
MGSCv37985,214,046 - 85,220,757 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36985,117,157 - 85,124,012 (-)NCBIMGSCv36mm8
Celera982,403,616 - 82,410,396 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.04NCBI
TENT5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38681,745,730 - 81,752,681 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl681,491,439 - 81,752,774 (-)EnsemblGRCh38hg38GRCh38
GRCh37682,455,447 - 82,462,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36682,512,166 - 82,519,147 (-)NCBINCBI36Build 36hg18NCBI36
Celera682,878,343 - 82,885,324 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef679,672,933 - 79,679,910 (-)NCBIHuRef
CHM1_1682,553,088 - 82,560,049 (-)NCBICHM1_1
T2T-CHM13v2.0682,955,095 - 82,962,045 (-)NCBIT2T-CHM13v2.0
Tent5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8895,102,349 - 95,109,100 (-)NCBIGRCr8
mRatBN7.2886,222,294 - 86,229,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl886,225,357 - 86,229,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx891,880,503 - 91,884,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0890,079,943 - 90,083,636 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0887,932,331 - 87,936,024 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0892,935,474 - 92,942,267 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl892,937,739 - 92,942,076 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0892,448,628 - 92,455,379 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4890,502,441 - 90,506,129 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1890,522,538 - 90,525,616 (-)NCBI
Celera885,847,174 - 85,850,862 (-)NCBICelera
Cytogenetic Map8q31NCBI
Tent5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554119,699,011 - 9,701,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554119,695,149 - 9,701,463 (-)NCBIChiLan1.0ChiLan1.0
TENT5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25101,840,559 - 101,847,729 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1699,719,648 - 99,726,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0679,636,412 - 79,643,444 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1682,901,079 - 82,908,072 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl682,901,079 - 82,908,072 (-)Ensemblpanpan1.1panPan2
TENT5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11242,270,029 - 42,277,905 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1242,274,000 - 42,277,513 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1242,148,920 - 42,156,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01243,037,950 - 43,045,845 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1243,041,928 - 43,044,620 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11242,349,866 - 42,357,748 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01242,326,251 - 42,334,268 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01242,481,165 - 42,489,053 (-)NCBIUU_Cfam_GSD_1.0
Tent5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494677,649,982 - 77,656,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365108,814,292 - 8,816,929 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365108,813,977 - 8,820,909 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENT5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl184,545,202 - 84,552,134 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1184,545,033 - 84,552,138 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2195,104,279 - 95,111,386 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TENT5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1136,392,131 - 6,399,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl136,392,025 - 6,398,564 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040182,632,569 - 182,640,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tent5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479912,829,528 - 12,834,511 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479912,829,562 - 12,836,850 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tent5a
365 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1663
Count of miRNA genes:664
Interacting mature miRNAs:869
Transcripts:ENSMUST00000034802
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse

Markers in Region
UniSTS:236209  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38985,322,491 - 85,322,609UniSTSGRCm38
MGSCv37985,216,098 - 85,216,216UniSTSGRCm37
Celera982,405,668 - 82,405,786UniSTS
Cytogenetic Map9E3.1UniSTS
Fam46a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37985,218,391 - 85,218,500UniSTSGRCm37
MGSCv37985,217,781 - 85,218,224UniSTSGRCm37
Celera982,407,420 - 82,407,863UniSTS
Celera982,408,030 - 82,408,139UniSTS
cM Map9 UniSTS
Fam46a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38985,324,784 - 85,324,893UniSTSGRCm38
MGSCv37985,218,391 - 85,218,500UniSTSGRCm37
Celera982,408,030 - 82,408,139UniSTS
Cytogenetic Map9E3.1UniSTS
cM Map9 UniSTS
Fam46a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38985,324,174 - 85,324,617UniSTSGRCm38
MGSCv37985,217,781 - 85,218,224UniSTSGRCm37
Celera982,407,420 - 82,407,863UniSTS
Cytogenetic Map9E3.1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000034802   ⟹   ENSMUSP00000034802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl985,202,492 - 85,209,177 (-)Ensembl
GRCm38.p6 Ensembl985,320,439 - 85,327,124 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187711   ⟹   ENSMUSP00000140869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl985,202,492 - 85,209,401 (-)Ensembl
GRCm38.p6 Ensembl985,320,439 - 85,327,348 (-)Ensembl
RefSeq Acc Id: NM_001160378   ⟹   NP_001153850
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39985,202,492 - 85,209,177 (-)NCBI
GRCm38985,320,439 - 85,327,124 (-)NCBI
MGSCv37985,214,046 - 85,220,757 (-)RGD
Celera982,403,616 - 82,410,396 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160379   ⟹   NP_001153851
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39985,202,492 - 85,209,203 (-)NCBI
GRCm38985,320,439 - 85,327,150 (-)ENTREZGENE
MGSCv37985,214,046 - 85,220,757 (-)RGD
Celera982,403,616 - 82,410,396 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001153851   ⟸   NM_001160379
- Peptide Label: isoform 2
- UniProtKB: A0A087WS27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153850   ⟸   NM_001160378
- Peptide Label: isoform 1
- UniProtKB: D3Z5S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034802   ⟸   ENSMUST00000034802
RefSeq Acc Id: ENSMUSP00000140869   ⟸   ENSMUST00000187711

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z5S8-F1-model_v2 AlphaFold D3Z5S8 1-447 view protein structure

Promoters
RGD ID:6844515
Promoter ID:MM_KWN:58249
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ENSMUST00000098501
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36985,214,976 - 85,215,862 (-)MPROMDB
RGD ID:6844516
Promoter ID:MM_KWN:58250
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001160378,   NM_001160379
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36985,220,326 - 85,221,677 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2670964 AgrOrtholog
Ensembl Genes ENSMUSG00000032265 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034802 ENTREZGENE
  ENSMUST00000034802.15 UniProtKB/Swiss-Prot
  ENSMUST00000187711 ENTREZGENE
  ENSMUST00000187711.2 UniProtKB/TrEMBL
InterPro DUF1693 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report mmu:212943 UniProtKB/Swiss-Prot
MGD MGI:2670964 ENTREZGENE
NCBI Gene 212943 ENTREZGENE
PANTHER PTHR12974 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TERMINAL NUCLEOTIDYLTRANSFERASE 5A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1693 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
PhenoGen Tent5a PhenoGen
SMART DUF1693 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WS27 ENTREZGENE, UniProtKB/TrEMBL
  D3Z5S8 ENTREZGENE
  Q3V3I9_MOUSE UniProtKB/TrEMBL
  TET5A_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Tent5a  terminal nucleotidyltransferase 5A  Fam46a  family with sequence similarity 46, member A  Symbol and/or name change 5135510 APPROVED