Pipox (pipecolic acid oxidase) - Rat Genome Database

Name: Pipox
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pipox (pipecolic acid oxidase) Mus musculus

Analyze

Symbol:

Pipox

Name:

pipecolic acid oxidase

RGD ID:

1322756

MGI Page

MGI

Description:

Is expressed in alimentary system; liver; nervous system; and urinary system. Orthologous to human PIPOX (pipecolic acid and sarcosine oxidase); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

L-pipecolate oxidase; L-pipecolic acid oxidase; LPIPOX; peroxisomal sarcosine oxidase; Pso

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PIPOX (pipecolic acid and sarcosine oxidase)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pipox (pipecolic acid and sarcosine oxidase)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pipox (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PIPOX (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PIPOX (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pipox (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC110255229 (peroxisomal sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	PIPOX (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pipox (pipecolic acid and sarcosine oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pipox (pipecolic acid and sarcosine oxidase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	PIPOX (pipecolic acid and sarcosine oxidase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	pipox (pipecolic acid oxidase)	Alliance	DIOPT (Roundup\|TreeFam\|ZFIN)
Caenorhabditis elegans (roundworm):	C15B12.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	C15B12.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,771,440 - 77,784,698 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	77,771,441 - 77,784,922 (-)	Ensembl
GRCm38	11	77,880,614 - 77,893,872 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	77,880,615 - 77,894,096 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,694,117 - 77,707,374 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	77,696,810 - 77,709,979 (-)	NCBI			mm8
Celera	11	85,380,241 - 85,393,553 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

peroxisomal disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

1-piperideine-6-carboxylic acid (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

aflatoxin B1 (EXP,ISO)

aldrin (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

belinostat (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

buta-1,3-diene (EXP)

C60 fullerene (ISO)

carbamazepine (ISO)

carbon nanotube (EXP)

cefaloridine (ISO)

chromium(6+) (EXP)

clofibrate (EXP)

cocaine (ISO)

cyclosporin A (EXP,ISO)

cyproconazole (EXP)

divanadium pentaoxide (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

entinostat (ISO)

epoxiconazole (EXP)

ethanol (ISO)

flutamide (ISO)

fumonisin B1 (EXP)

genistein (ISO)

methylmercury chloride (ISO)

O-methyleugenol (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pipecolic acid (ISO)

pirinixic acid (EXP)

potassium dichromate (EXP)

propiconazole (EXP)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

theophylline (ISO)

trichostatin A (ISO)

trimellitic anhydride (EXP)

tungsten (EXP)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

L-lysine catabolic process to acetyl-CoA via L-pipecolate (IBA,ISO,ISS)

tetrahydrofolate metabolic process (IEA)

Cellular Component

peroxisome (IBA,IDA,ISO)

Molecular Function

L-pipecolate oxidase activity (IBA,ISO,ISS)

oxidoreductase activity (IEA)

protein binding (ISO)

sarcosine oxidase activity (IBA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

2-aminoadipic 2-oxoadipic aciduria pathway (ISO)

glutaric aciduria type I pathway (ISO)

glycine, serine and threonine metabolic pathway (IEA)

hyperlysinemia pathway (ISO)

lysine degradation pathway (IEA,ISO)

saccharopinuria pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal behavior (IEA)

decreased vertical activity (IEA)

hypoactivity (IEA)

increased anxiety-related response (IEA)

increased thigmotaxis (IEA)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Pipeline to import KEGG annotations from KEGG into RGD
5.	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	RGD automated import pipeline
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9441754	PMID:10349636	PMID:10642506	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12904583	PMID:14561759	PMID:14610273	PMID:14681479	PMID:15489334	PMID:16141072
PMID:16141073	PMID:17967808	PMID:18287559	PMID:18799693	PMID:21267068	PMID:21386911	PMID:21677750	PMID:21873635	PMID:27626380

Genomics

Comparative Map Data

Pipox
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,771,440 - 77,784,698 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	77,771,441 - 77,784,922 (-)	Ensembl
GRCm38	11	77,880,614 - 77,893,872 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	77,880,615 - 77,894,096 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,694,117 - 77,707,374 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	77,696,810 - 77,709,979 (-)	NCBI			mm8
Celera	11	85,380,241 - 85,393,553 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

PIPOX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	28,950,513 - 29,057,216 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	29,043,141 - 29,057,227 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	27,370,159 - 27,384,234 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	24,394,044 - 24,408,362 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	24,394,043 - 24,408,362	NCBI
Celera	17	24,229,276 - 24,243,594 (+)	NCBI
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	23,578,154 - 23,592,473 (+)	NCBI		HuRef
CHM1_1	17	27,432,423 - 27,446,741 (+)	NCBI		CHM1_1

Pipox
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	62,769,874 - 62,783,484 (-)	NCBI
Rnor_6.0 Ensembl	10	64,952,119 - 64,964,862 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	64,951,986 - 64,964,865 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	66,660,848 - 66,673,727 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	63,920,814 - 63,933,307 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	63,934,437 - 63,946,930 (-)	NCBI
Celera	10	61,749,538 - 61,762,034 (-)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Pipox
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,128,509 - 4,143,334 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,128,503 - 4,225,027 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIPOX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	28,225,831 - 28,240,210 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,225,831 - 28,240,210 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	27,717,083 - 27,820,776 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

PIPOX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	43,200,371 - 43,212,288 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	43,200,343 - 43,212,288 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Pipox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936538	5,218,097 - 5,252,579 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110255229
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,257,188 - 45,322,767 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,256,806 - 45,270,755 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PIPOX
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,805,369 - 22,820,015 (+)	NCBI
ChlSab1.1 Ensembl	16	22,805,740 - 22,820,537 (+)	Ensembl

Pipox
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	1,594,988 - 1,615,210 (+)	NCBI

Position Markers

Pipox

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B5	UniSTS
cM Map	11	44.83	UniSTS

D11Bhm41

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	77,893,316 - 77,893,482	UniSTS	GRCm38
MGSCv37	11	77,706,818 - 77,706,984	UniSTS	GRCm37
Celera	11	85,392,997 - 85,393,163	UniSTS
Cytogenetic Map	11	B5	UniSTS
cM Map	11	44.78	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70800372	104800540	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66842594	100842826	Mouse
1301414	Heal10_m	wound healing/regeneration 10 (mouse)			Not determined		11	77546357	111546496	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66842594	100842826	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63428581	81939647	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70800372	104800540	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66842594	100842826	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66842594	100842826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66842594	100842826	Mouse
1302124	Eae7_m	susceptibility to experimental allergic encephalomyelitis 7 (mouse)			Not determined		11	77683047	99486994	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70800372	104800540	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
1301404	Sbmd4_m	spinal bone mineral density 4 (mouse)			Not determined		11	72128823	106128908	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70800372	104800540	Mouse
4141365	Ltxs3_m	lethal factor toxin susceptibility 3 (mouse)			Not determined		11	77683047	80855532	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66842594	100842826	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
1301078	Alcp2_m	alcohol preference locus 2 (mouse)			Not determined		11	72318970	84840636	Mouse
1301310	Tmevd5_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)			Not determined		11	72835299	106835463	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67187365	79923086	Mouse
4142348	Pstc2_m	periosteal circumference 2 (mouse)			Not determined		11	72927789	106927907	Mouse
10043866	Adip19_m	adiposity 19 (mouse)			Not determined		11	72927789	106927907	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63428581	94173092	Mouse
10045616	Heal25_m	wound healing/regeneration 25 (mouse)			Not determined		11	77546357	111546496	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68300000	102000000	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64939510	98939647	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64939510	98939647	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62700000	109500000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64939510	98939647	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
12903994	Opfaq3_m	open field activity QTL 3 (mouse)					11	73846715	82178599	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
10413882	Moe1_m	modifier of epilepsy 1 (mouse)					11	77880152	111880273	Mouse
11038695	Par8_m	pulmonary adenoma resistance 8 (mouse)					11	77172953	111173092	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	473
Count of miRNA genes:	267
Interacting mature miRNAs:	306
Transcripts:	ENSMUST00000017597, ENSMUST00000151383, ENSMUST00000155401
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_008952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK008555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK135009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL591065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB561815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC013525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY708439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U94700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000017597 ⟹ ENSMUSP00000017597

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	77,880,615 - 77,894,096 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000151383

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	77,881,060 - 77,882,686 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000155401

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	77,882,619 - 77,884,544 (-)	Ensembl

RefSeq Acc Id:

NM_008952 ⟹ NP_032978

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	77,771,441 - 77,784,698 (-)	NCBI
GRCm38	11	77,880,615 - 77,893,872 (-)	NCBI
MGSCv37	11	77,694,117 - 77,707,374 (-)	RGD
Celera	11	85,380,241 - 85,393,553 (-)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GAACTCTAGTTTAGCTGGACTTTGCCTCCCTCCTCCCCCTGTAGCCTGGAGGTGCCTTTGTTTG
CCTTCTCTTCAGTGGGCTTTGTGGCATCATGGCTGCTCAGACAGATTTCTGGGATGCTATTGTG
ATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGCCAAACACTCCAAGAGCGTCC
TCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAAT
CAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGATGAAGGAATGTTATCAGACATGGGCC
CAGCTGGAGCGTGAAGCCGGAACCCAGTTACACAGGCAGACTGAGCTCTTACTTCTGGGGACGA
AGGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGGCAAGGGATCGACCATGAGTA
TCTTTCGTCAGTGGATTTAAAGCAACGCTTTCCAAACATTCGGTTCACCAGGGGAGAAGTGGGG
CTCTTGGACAAGACTGGAGGTGTCCTCTATGCAGACAAGGCCCTCAGAGCCCTCCAGCATATAA
TTTGTCAGCTAGGAGGCACTGTGTGTGATGGAGAGAAGGTAGTGGAGATAAGACCTGGTCTACC
CGTCACAGTGAAAACCACCTTGAAGAGCTACCAAGCCAACAGCTTGGTCATCACTGCTGGTCCC
TGGACCAACCGGCTTCTGCATCCTCTGGGGATTGAGTTGCCTCTCCAGACCCTTAGGATCAATG
TGTGTTACTGGCGAGAGAAGGTCCCTGGGAGCTATGGTGTATCACAAGCTTTTCCATGCATCCT
GGGTCTGGATCTGGCCCCCCACCACATCTATGGACTGCCAGCATCCGAGTACCCGGGGCTGATG
AAGATCTGCTATCACCATGGTGACAATGTGGACCCAGAGGAGCGGGACTGCCCCAAAACCTTCT
CAGACATCCAAGACGTTCAAATTCTATGCCACTTTGTCAGAGATCATTTACCAGGCCTGCGGGC
TGAGCCAGACATCATGGAACGCTGCATGTACACGAATACTCCTGATGAGCACTTTATTCTTGAT
TGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTGGACATGGATTCAAGTTGG
CCCCTGTTGTGGGGAAGATCCTCTATGAGCTAAGCATGAAATTACCCCCATCCTATGACTTGGC
TCCGTTTCGAATGAGTCGCTTCTCTACGCTGAGCAAAGCCCACCTTTGACCCCAGCTGACTCTC
TCCTGGGCAGGAAAGCCCTCCTAGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTCTTCT
CCTCCTGATTCAATGGAATCTCCCATAAACACCAAATGATTGAACATTTTCCCCCCAATCAGCC
TCCCTAGTCTATCTCATTTCTCCTTCCCAGAAAGTCAGCGAGATTCACCATCACAGAACAGCAA
GGGGCTTTAAGATGGATGTCTCAATGGGGAGGGGCTGGAGACAGGCTCAGTAGACTAAGGGACT
CCTTTAAATTTCTTTTTGCTGGGACACTGGGTGAACTTGCGATTGCTTTGACTAAATCTGCTCA
GGGGGAATGTAAAACAGATTATATTTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAA
CTTAAGCCAGCCTCTATCACCAAAAAAAAAGTCTCACCTCTAATAAATACACATTTGCCAGGAA
AAAAAAATTGCTGAAAAAAAATAAACAAAAACCTGGATTGCATAAT

hide sequence

RefSeq Acc Id:

XM_011248807 ⟹ XP_011247109

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	77,771,440 - 77,784,654 (-)	NCBI
GRCm38	11	77,880,614 - 77,893,828 (-)	NCBI

Sequence:

show sequence

CCTGGAGGTGCCTTTGTTTGCCTTCTCTTCAGTGGGCTTTGTGGCATCATGGCTGCTCAGACAG
ATTTCTGGGATGCTATTGTGATTGGAGCAGGCATCCAGGGCTGCTTTACCGCGTACCACCTGGC
CAAACACTCCAAGAGCGTCCTCCTGCTGGAGCAGTTCTTTCTTCCCCATTCCCGAGGAAGCTCA
CATGGACAGAGCCGCATAATCAGAAAGGCTTATCCAGAGGACTTCTACACGATGATGATGAAGG
AATGTTATCAGACATGGGCCCAGCTGGAGCGTGAAGCCGGAACCCAGTTACACAGGCAGACTGA
GCTCTTACTTCTGGGGACGAAGGAAAATCCAGGATTAAAGACAATCCAGGCCACCCTGTCTAGG
CAAGGGATCGACCATGAGTATCTTTCGTCAGTGGATTTAAAGCAACGCTTTCCAAACATTCGGT
TCACCAGGGGAGAAGTGGGGCTCTTGGACAAGACTGGAGGTGTCCTCTATGCAGACAAGGCCCT
CAGAGCCCTCCAGCATATAATTTGTCAGCTAGGAGGCACTGTGTGTGATGGAGAGAAGGTAGTG
GAGATAAGACCTGGTCTACCCGTCACAGTGAAAACCACCTTGAAGAGCTACCAAGCCAACAGCT
TGGTCATCACTGCTGGTCCCTGGACCAACCGGCTTCTGCATCCTCTGGGGATTGAGTTGCCTCT
CCAGACCCTTAGGATCAATGTGTGTTACTGGCGAGAGAAGGTCCCTGGGAGCTATGGTGTATCA
CAAGCTTTTCCATGCATCCTGGGTCTGGATCTGGCCCCCCACCACATCTATGGACTGCCAGCAT
CCGAGTACCCGGGGCTGATGAAGATCTGCTATCACCATGGTGACAATGTGGACCCAGAGGAGCG
GGACTGCCCCAAAACCTTCTCAGACATCCAAGACGTTCAAATTCTATGCCACTTTGTCAGAGAT
CATTTACCAGGCCTGCGGGCTGAGCCAGACATCATGGAACGCTGCATGTACACGTATGACAACA
TTGTCATCGGCGCTGGATTCTCTGGACATGGATTCAAGTTGGCCCCTGTTGTGGGGAAGATCCT
CTATGAGCTAAGCATGAAATTACCCCCATCCTATGACTTGGCTCCGTTTCGAATGAGTCGCTTC
TCTACGCTGAGCAAAGCCCACCTTTGACCCCAGCTGACTCTCTCCTGGGCAGGAAAGCCCTCCT
AGGGGAGATTTCCAGGAGATGTGGCCTTGACGAGTTTCTTCTCCTCCTGATTCAATGGAATCTC
CCATAAACACCAAATGATTGAACATTTTCCCCCCAATCAGCCTCCCTAGTCTATCTCATTTCTC
CTTCCCAGAAAGTCAGCGAGATTCACCATCACAGAACAGCAAGGGGCTTTAAGATGGATGTCTC
AATGGGGAGGGGCTGGAGACAGGCTCAGTAGACTAAGGGACTCCTTTAAATTTCTTTTTGCTGG
GACACTGGGTGAACTTGCGATTGCTTTGACTAAATCTGCTCAGGGGGAATGTAAAACAGATTAT
ATTTTATAAACCACTAGTGCCTTTGGGTTTCTTTGCCAAAAACTTAAGCCAGCCTCTATCACCA
AAAAAAAAGTCTCACCTCTAATAAATACACATTTGCCAGGAAAAAAAAATTGCTGAAAAAAAAT
AAACAAAAACCTGGATTGCATAATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_032978	(Get FASTA)	NCBI Sequence Viewer
	XP_011247109	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC39948	(Get FASTA)	NCBI Sequence Viewer
	AAH13525	(Get FASTA)	NCBI Sequence Viewer
	BAB25741	(Get FASTA)	NCBI Sequence Viewer
	BAE28913	(Get FASTA)	NCBI Sequence Viewer
	EDL12896	(Get FASTA)	NCBI Sequence Viewer
	Q9D826	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_032978 ⟸ NM_008952

- UniProtKB:

Q9D826 (UniProtKB/Swiss-Prot), Q3UEJ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAQTDFWDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFY
TMMMKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQR
FPNIRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDGEKVVEIRPGLPVTVKTTLKS
YQANSLVITAGPWTNRLLHPLGIELPLQTLRINVCYWREKVPGSYGVSQAFPCILGLDLAPHHI
YGLPASEYPGLMKICYHHGDNVDPEERDCPKTFSDIQDVQILCHFVRDHLPGLRAEPDIMERCM
YTNTPDEHFILDCHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMKLPPSYDLAPFRMSRFST
LSKAHL

hide sequence

RefSeq Acc Id:

XP_011247109 ⟸ XM_011248807

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAQTDFWDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFY
TMMMKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQR
FPNIRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDGEKVVEIRPGLPVTVKTTLKS
YQANSLVITAGPWTNRLLHPLGIELPLQTLRINVCYWREKVPGSYGVSQAFPCILGLDLAPHHI
YGLPASEYPGLMKICYHHGDNVDPEERDCPKTFSDIQDVQILCHFVRDHLPGLRAEPDIMERCM
YTYDNIVIGAGFSGHGFKLAPVVGKILYELSMKLPPSYDLAPFRMSRFSTLSKAHL

hide sequence

RefSeq Acc Id:

ENSMUSP00000017597 ⟸ ENSMUST00000017597

Protein Domains

DAO

Promoters

RGD ID:

6821558

Promoter ID:

MM_KWN:8641

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney, Liver, Spleen

Transcripts:

OTTMUST00000000216

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	77,695,781 - 77,696,502 (-)	MPROMDB

RGD ID:

6821559

Promoter ID:

MM_KWN:8642

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney, Liver

Transcripts:

OTTMUST00000000215

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	77,697,551 - 77,698,402 (-)	MPROMDB

RGD ID:

6821556

Promoter ID:

MM_KWN:8643

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, ES_Cell, Kidney, Liver, Lung

Transcripts:

OTTMUST00000000214

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	77,707,281 - 77,707,982 (-)	MPROMDB

RGD ID:

8675662

Promoter ID:

EPDNEW_M15859

Type:

initiation region

Name:

Pipox_1

Description:

Mus musculus pipecolic acid oxidase , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	77,893,798 - 77,893,858	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1197006	AgrOrtholog
Ensembl Genes	ENSMUSG00000017453	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000017597	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000017597	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.50.50.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	FAD-dep_OxRdtase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FAD/NAD-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SoxA_mon	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19193	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1197006	ENTREZGENE
NCBI Gene	19193	ENTREZGENE
Pfam	DAO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pipox	PhenoGen
Superfamily-SCOP	SSF51905	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	soxA_mon	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	Q3UEJ8	ENTREZGENE, UniProtKB/TrEMBL
	Q9D826	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	O55223	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)