4930524B15Rik (RIKEN cDNA 4930524B15 gene) - Rat Genome Database

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Gene: 4930524B15Rik (RIKEN cDNA 4930524B15 gene) Mus musculus
Analyze
Symbol: 4930524B15Rik
Name: RIKEN cDNA 4930524B15 gene
RGD ID: 1322748
MGI Page MGI
Description: Orthologous to human C5orf47 (chromosome 5 open reading frame 47).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC67592; RP23-71G18.2; uncharacterized protein C5orf47 homolog
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,915,577 - 31,929,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,915,592 - 31,929,651 (+)EnsemblGRCm39 Ensembl
GRCm381131,965,554 - 31,979,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,965,592 - 31,979,651 (+)EnsemblGRCm38mm10GRCm38
MGSCv371131,865,633 - 31,879,651 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,865,633 - 31,879,651 (+)NCBIMGSCv36mm8
Celera1134,379,712 - 34,393,732 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:32592116   PMID:34174788  


Genomics

Comparative Map Data
4930524B15Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,915,577 - 31,929,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,915,592 - 31,929,651 (+)EnsemblGRCm39 Ensembl
GRCm381131,965,554 - 31,979,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,965,592 - 31,979,651 (+)EnsemblGRCm38mm10GRCm38
MGSCv371131,865,633 - 31,879,651 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,865,633 - 31,879,651 (+)NCBIMGSCv36mm8
Celera1134,379,712 - 34,393,732 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.71NCBI
C5orf47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,989,170 - 174,009,548 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,973,779 - 174,006,140 (+)EnsemblGRCh38hg38GRCh38
GRCh375173,416,173 - 173,433,143 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365173,333,391 - 173,365,749 (+)NCBINCBI36Build 36hg18NCBI36
Celera5169,448,431 - 169,465,412 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5168,512,597 - 168,529,577 (+)NCBIHuRef
CHM1_15172,848,754 - 172,865,735 (+)NCBICHM1_1
T2T-CHM13v2.05174,529,506 - 174,549,885 (+)NCBIT2T-CHM13v2.0
C10h5orf47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,184,999 - 16,198,515 (-)NCBIGRCr8
mRatBN7.21015,680,525 - 15,694,014 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,680,525 - 15,693,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,428,117 - 20,441,532 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,917,022 - 19,930,437 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,407,176 - 15,420,610 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,947,253 - 15,960,728 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,947,253 - 15,960,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,841,445 - 15,854,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,928,113 - 15,941,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,931,496 - 15,942,559 (-)NCBI
Celera1015,346,869 - 15,360,289 (-)NCBICelera
Cytogenetic Map10q12NCBI
CUNH5orf47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540826,629,049 - 26,664,803 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1438,573,453 - 38,599,648 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha438,519,685 - 38,534,878 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0438,946,592 - 38,961,860 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl438,946,554 - 38,961,920 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1438,763,201 - 38,778,352 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0438,951,263 - 38,966,426 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0439,459,885 - 39,475,119 (-)NCBIUU_Cfam_GSD_1.0
CUNH5orf47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,037,992 - 93,051,857 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366091,763,214 - 1,774,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C16H5orf47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,387,567 - 50,400,272 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11650,383,299 - 50,400,228 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH5orf47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12376,138,822 - 76,156,825 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2376,139,841 - 76,150,436 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660342,452,756 - 2,465,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,041,398 - 16,054,443 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4930524B15Rik
394 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:514
Count of miRNA genes:365
Interacting mature miRNAs:423
Transcripts:ENSMUST00000102829
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
25394552Skmw69_mskeletal muscle weight 69, TA (mouse)112969902932329535Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
25394550Skmw71_mskeletal muscle weight 71, gastroc (mouse)113127543232745567Mouse
25394551Skmw70_mskeletal muscle weight 70, EDL (mouse)113132273732594975Mouse
25394558Skmw72_mskeletal muscle weight 72, soleus (mouse)113132943032785551Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000102829   ⟹   ENSMUSP00000099893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,915,592 - 31,929,651 (+)Ensembl
GRCm38.p6 Ensembl1131,965,592 - 31,979,651 (+)Ensembl
RefSeq Acc Id: NM_001417868   ⟹   NP_001404797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,915,577 - 31,929,653 (+)NCBI
RefSeq Acc Id: NM_026262   ⟹   NP_080538
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,915,577 - 31,929,653 (+)NCBI
GRCm381131,965,633 - 31,979,651 (+)NCBI
MGSCv371131,865,633 - 31,879,651 (+)RGD
Celera1134,379,712 - 34,393,732 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080538   ⟸   NM_026262
- UniProtKB: Q8CER9 (UniProtKB/Swiss-Prot),   Q9CQS0 (UniProtKB/Swiss-Prot),   Q24JP4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000099893   ⟸   ENSMUST00000102829
RefSeq Acc Id: NP_001404797   ⟸   NM_001417868
- UniProtKB: Q8CER9 (UniProtKB/Swiss-Prot),   Q24JP4 (UniProtKB/Swiss-Prot),   Q9CQS0 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q24JP4-F1-model_v2 AlphaFold Q24JP4 1-165 view protein structure

Promoters
RGD ID:8674218
Promoter ID:EPDNEW_M15140
Type:initiation region
Name:4930524B15Rik_1
Description:Mus musculus RIKEN cDNA 4930524B15 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381131,965,586 - 31,965,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914842 AgrOrtholog
Ensembl Genes ENSMUSG00000020299 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000102829 ENTREZGENE
  ENSMUST00000102829.4 UniProtKB/Swiss-Prot
InterPro DUF4680 UniProtKB/Swiss-Prot
KEGG Report mmu:67592 UniProtKB/Swiss-Prot
MGD MGI:1914842 ENTREZGENE
NCBI Gene 67592 ENTREZGENE
PANTHER PTHR38655 UniProtKB/Swiss-Prot
  SIMILAR TO RIKEN CDNA 4930524B15 UniProtKB/Swiss-Prot
Pfam DUF4680 UniProtKB/Swiss-Prot
PhenoGen 4930524B15Rik PhenoGen
UniProt CE047_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CER9 ENTREZGENE
  Q9CQS0 ENTREZGENE
UniProt Secondary Q8CER9 UniProtKB/Swiss-Prot
  Q9CQS0 UniProtKB/Swiss-Prot