Slc35f2 (solute carrier family 35, member F2) - Rat Genome Database

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Gene: Slc35f2 (solute carrier family 35, member F2) Mus musculus
Analyze
Symbol: Slc35f2
Name: solute carrier family 35, member F2
RGD ID: 1322596
MGI Page MGI
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is expressed in several structures, including alimentary system; central nervous system; early embryo; genitourinary system; and nose. Orthologous to human SLC35F2 (solute carrier family 35 member F2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500009K05Rik; AU019213; solute carrier family 35 member F2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,678,733 - 53,725,445 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,678,822 - 53,725,438 (+)EnsemblGRCm39 Ensembl
GRCm38953,771,433 - 53,818,161 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,771,538 - 53,818,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv37953,619,342 - 53,665,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,569,675 - 53,616,293 (+)NCBIMGSCv36mm8
Celera951,024,617 - 51,071,508 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21731673   PMID:22967998   PMID:27824289  


Genomics

Comparative Map Data
Slc35f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,678,733 - 53,725,445 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,678,822 - 53,725,438 (+)EnsemblGRCm39 Ensembl
GRCm38953,771,433 - 53,818,161 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,771,538 - 53,818,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv37953,619,342 - 53,665,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,569,675 - 53,616,293 (+)NCBIMGSCv36mm8
Celera951,024,617 - 51,071,508 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
SLC35F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,790,991 - 107,858,787 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,790,991 - 107,928,293 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,661,717 - 107,729,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,166,927 - 107,234,864 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411107,166,927 - 107,234,864NCBI
Celera11104,816,599 - 104,884,333 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,587,143 - 103,655,308 (-)NCBIHuRef
CHM1_111107,545,043 - 107,613,193 (-)NCBICHM1_1
T2T-CHM13v2.011107,798,144 - 107,865,917 (-)NCBIT2T-CHM13v2.0
Slc35f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8863,055,503 - 63,099,791 (+)NCBIGRCr8
mRatBN7.2854,159,970 - 54,203,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,159,970 - 54,203,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx859,685,417 - 59,729,310 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,964,439 - 58,008,343 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,828,692 - 55,872,587 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,347,474 - 58,391,462 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,347,736 - 58,391,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0856,929,020 - 56,972,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4857,230,412 - 57,274,424 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1857,249,713 - 57,292,248 (+)NCBI
Celera853,651,055 - 53,694,600 (+)NCBICelera
Cytogenetic Map8q24NCBI
Slc35f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,110,692 - 10,156,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,111,134 - 10,156,575 (-)NCBIChiLan1.0ChiLan1.0
SLC35F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,539,837 - 108,610,523 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,633,674 - 109,704,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,681,791 - 102,750,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,159,625 - 106,227,656 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,159,625 - 106,227,656 (-)Ensemblpanpan1.1panPan2
SLC35F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,608,190 - 24,658,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,607,815 - 24,658,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,527,364 - 24,577,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,630,962 - 24,681,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,630,930 - 24,681,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,684,989 - 24,734,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,579,736 - 24,628,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,638,557 - 24,688,833 (+)NCBIUU_Cfam_GSD_1.0
Slc35f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,644,138 - 90,675,405 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551830,055 - 891,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936551861,104 - 892,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,288,558 - 36,341,284 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,243,059 - 36,341,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,359,802 - 40,417,733 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,226,602 - 99,292,093 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,224,798 - 99,291,899 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,662,304 - 26,725,644 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35f2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,550,937 - 2,606,249 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247842,551,595 - 2,605,556 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc35f2
1278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:309
Interacting mature miRNAs:351
Transcripts:ENSMUST00000048670
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
13515057Adip20b_madiposity 20b (mouse)94870090853791702Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse

Markers in Region
AU019213  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38953,817,763 - 53,817,859UniSTSGRCm38
MGSCv37953,665,570 - 53,665,666UniSTSGRCm37
Celera951,071,110 - 51,071,206UniSTS
Cytogenetic Map9A5.3UniSTS
Whitehead/MRC_RH9536.87UniSTS
Slc35f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9A5.3UniSTS
cM Map929.12UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000048670   ⟹   ENSMUSP00000046528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl953,678,822 - 53,725,438 (+)Ensembl
GRCm38.p6 Ensembl953,771,538 - 53,818,154 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl953,718,001 - 53,725,438 (+)Ensembl
GRCm38.p6 Ensembl953,810,717 - 53,818,154 (+)Ensembl
RefSeq Acc Id: NM_028060   ⟹   NP_082336
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39953,678,819 - 53,725,445 (+)NCBI
GRCm38953,771,535 - 53,818,161 (+)NCBI
MGSCv37953,619,342 - 53,665,968 (+)RGD
Celera951,024,617 - 51,071,508 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511460   ⟹   XP_006511523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39953,701,775 - 53,725,438 (+)NCBI
GRCm38953,794,491 - 53,818,154 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511461   ⟹   XP_006511524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39953,678,733 - 53,725,438 (+)NCBI
GRCm38953,771,433 - 53,818,154 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511462   ⟹   XP_006511525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39953,701,942 - 53,725,438 (+)NCBI
GRCm38953,794,735 - 53,818,154 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082336   ⟸   NM_028060
- UniProtKB: Q9DB62 (UniProtKB/Swiss-Prot),   Q7TML3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511524   ⟸   XM_006511461
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006511523   ⟸   XM_006511460
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511525   ⟸   XM_006511462
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000046528   ⟸   ENSMUST00000048670

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TML3-F1-model_v2 AlphaFold Q7TML3 1-375 view protein structure

Promoters
RGD ID:6845163
Promoter ID:MM_KWN:57380
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney
Transcripts:NM_028060
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36953,619,301 - 53,619,801 (+)MPROMDB
RGD ID:8669622
Promoter ID:EPDNEW_M12842
Type:initiation region
Name:Slc35f2_1
Description:Mus musculus solute carrier family 35, member F2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38953,771,526 - 53,771,586EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919272 AgrOrtholog
Ensembl Genes ENSMUSG00000042195 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000048670 ENTREZGENE
  ENSMUST00000048670.10 UniProtKB/Swiss-Prot
InterPro SLC35_F1/F2/F6 UniProtKB/Swiss-Prot
KEGG Report mmu:72022 UniProtKB/Swiss-Prot
MGD MGI:1919272 ENTREZGENE
NCBI Gene 72022 ENTREZGENE
PANTHER DUF914-RELATED UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 35 MEMBER F2 UniProtKB/Swiss-Prot
Pfam SLC35F UniProtKB/Swiss-Prot
PhenoGen Slc35f2 PhenoGen
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/Swiss-Prot
UniProt Q7TML3 ENTREZGENE
  Q9DB62 ENTREZGENE
  S35F2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9DB62 UniProtKB/Swiss-Prot