LYPLAL1 (lysophospholipase like 1) - Rat Genome Database

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Gene: LYPLAL1 (lysophospholipase like 1) Homo sapiens
Analyze
Symbol: LYPLAL1
Name: lysophospholipase like 1
RGD ID: 1322525
HGNC Page HGNC:20440
Description: Enables palmitoyl-(protein) hydrolase activity. Involved in negative regulation of cGAS/STING signaling pathway. Located in cytosol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ99730; KIAA1238; lysophospholipase-like 1; lysophospholipase-like protein 1; Q96AV0
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381219,173,878 - 219,445,496 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1219,173,869 - 219,212,865 (+)EnsemblGRCh38hg38GRCh38
GRCh371219,347,220 - 219,386,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361217,413,844 - 217,451,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341215,735,617 - 215,773,553NCBI
Celera1192,564,906 - 192,603,940 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1190,016,930 - 190,055,957 (+)NCBIHuRef
CHM1_11220,620,005 - 220,659,032 (+)NCBICHM1_1
T2T-CHM13v2.01218,409,848 - 218,681,408 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IDA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12706107   PMID:15489334   PMID:16344560   PMID:16710414   PMID:19557161   PMID:20703240   PMID:20724581   PMID:20881960   PMID:20935629   PMID:21674055  
PMID:21873635   PMID:21953277   PMID:22052940   PMID:22179955   PMID:22479202   PMID:22581228   PMID:22589738   PMID:22810586   PMID:23221025   PMID:23376485   PMID:23563607   PMID:23754948  
PMID:24509480   PMID:26638075   PMID:26848030   PMID:27181159   PMID:27752939   PMID:28645872   PMID:29395067   PMID:29568061   PMID:29648650   PMID:29955894   PMID:30397336   PMID:31091453  
PMID:31536960   PMID:31540324   PMID:32296183   PMID:32628020   PMID:32877691   PMID:33545068   PMID:33644029   PMID:33961781   PMID:34079125   PMID:34597346   PMID:35256949   PMID:35831314  
PMID:36042349   PMID:36114006   PMID:36215168   PMID:37676718   PMID:37802025  


Genomics

Comparative Map Data
LYPLAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381219,173,878 - 219,445,496 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1219,173,869 - 219,212,865 (+)EnsemblGRCh38hg38GRCh38
GRCh371219,347,220 - 219,386,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361217,413,844 - 217,451,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341215,735,617 - 215,773,553NCBI
Celera1192,564,906 - 192,603,940 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1190,016,930 - 190,055,957 (+)NCBIHuRef
CHM1_11220,620,005 - 220,659,032 (+)NCBICHM1_1
T2T-CHM13v2.01218,409,848 - 218,681,408 (+)NCBIT2T-CHM13v2.0
Lyplal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,819,929 - 185,849,507 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,819,928 - 185,849,507 (-)EnsemblGRCm39 Ensembl
GRCm381186,087,732 - 186,117,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,087,731 - 186,117,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv371187,911,611 - 187,941,189 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361187,788,668 - 187,818,098 (-)NCBIMGSCv36mm8
Celera1193,030,160 - 193,053,254 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.81NCBI
Lyplal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813100,158,060 - 100,189,339 (-)NCBIGRCr8
mRatBN7.21397,626,568 - 97,657,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1397,626,451 - 97,657,867 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13100,135,908 - 100,167,350 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013101,531,636 - 101,562,909 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01398,718,214 - 98,749,656 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013104,049,263 - 104,080,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13104,049,386 - 104,080,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013108,706,787 - 108,738,098 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413102,143,174 - 102,171,752 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113102,332,339 - 102,360,879 (-)NCBI
Celera1397,136,739 - 97,168,192 (-)NCBICelera
Cytogenetic Map13q26NCBI
Lyplal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555204,251,957 - 4,281,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555204,251,863 - 4,281,775 (-)NCBIChiLan1.0ChiLan1.0
LYPLAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2129,928,773 - 30,231,267 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1130,025,414 - 30,193,861 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01194,737,158 - 194,775,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11199,586,920 - 199,625,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1199,586,920 - 199,625,423 (+)Ensemblpanpan1.1panPan2
LYPLAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13814,100,818 - 14,137,292 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3814,100,698 - 14,268,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3814,143,532 - 14,180,609 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03814,136,744 - 14,173,896 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3814,136,661 - 14,173,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13814,146,280 - 14,183,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03814,489,895 - 14,526,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03814,802,107 - 14,838,748 (+)NCBIUU_Cfam_GSD_1.0
Lyplal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934457,685,177 - 57,712,354 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366502,933,306 - 2,960,846 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366502,933,661 - 2,960,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPLAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl108,946,487 - 9,062,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1108,946,463 - 9,061,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21011,029,585 - 11,088,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPLAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12510,370,715 - 10,408,807 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2510,370,814 - 10,408,767 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605510,766,878 - 10,806,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyplal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248353,022,311 - 3,052,724 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248353,023,151 - 3,052,826 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LYPLAL1
55 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000050298] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q32.3-44(chr1:214023812-248918469)x3 copy number gain See cases [RCV000050981] Chr1:214023812..248918469 [GRCh38]
Chr1:214197155..249212668 [GRCh37]
Chr1:212263778..247179291 [NCBI36]
Chr1:1q32.3-44
pathogenic
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215447347-221971832)x3 copy number gain See cases [RCV000051874] Chr1:215447347..221971832 [GRCh38]
Chr1:215620690..222145174 [GRCh37]
Chr1:213687313..220211797 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q41(chr1:216518607-219827290)x1 copy number loss See cases [RCV000053953] Chr1:216518607..219827290 [GRCh38]
Chr1:216691949..220000632 [GRCh37]
Chr1:214758572..218067255 [NCBI36]
Chr1:1q41
pathogenic
NM_138794.4(LYPLAL1):c.361+2299C>T single nucleotide variant Lung cancer [RCV000090520] Chr1:219195550 [GRCh38]
Chr1:219368892 [GRCh37]
Chr1:1q41
uncertain significance
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:218712139-219548762)x1 copy number loss See cases [RCV000140914] Chr1:218712139..219548762 [GRCh38]
Chr1:218885481..219722104 [GRCh37]
Chr1:216952104..217788727 [NCBI36]
Chr1:1q41
uncertain significance
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12
pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000148255] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
Single allele deletion Loeys-Dietz syndrome 4 [RCV000210452] Chr1:215588712..222145072 [GRCh37]
Chr1:1q41
pathogenic
Single allele deletion Loeys-Dietz syndrome 4 [RCV000210464] Chr1:216672181..220202575 [GRCh37]
Chr1:1q41
pathogenic
NM_138794.5(LYPLAL1):c.224A>G (p.Asn75Ser) single nucleotide variant Inborn genetic diseases [RCV003269661] Chr1:219193114 [GRCh38]
Chr1:219366456 [GRCh37]
Chr1:1q41
uncertain significance
Single allele deletion Usher syndrome [RCV000505151] Chr1:216066818..222607612 [GRCh38]
Chr1:216240159..222780953 [GRCh37]
Chr1:1q41
likely pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1q41-44(chr1:214697099-249224684)x3 copy number gain See cases [RCV000449210] Chr1:214697099..249224684 [GRCh37]
Chr1:1q41-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q41(chr1:219089280-219951094)x3 copy number gain See cases [RCV000511865] Chr1:219089280..219951094 [GRCh37]
Chr1:1q41
likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_138794.5(LYPLAL1):c.149C>T (p.Thr50Ile) single nucleotide variant Inborn genetic diseases [RCV003285963] Chr1:219179204 [GRCh38]
Chr1:219352546 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1q41-44(chr1:218252551-249224684)x3 copy number gain not provided [RCV000684700] Chr1:218252551..249224684 [GRCh37]
Chr1:1q41-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
NM_138794.5(LYPLAL1):c.70C>T (p.Leu24=) single nucleotide variant not provided [RCV000937794] Chr1:219173960 [GRCh38]
Chr1:219347302 [GRCh37]
Chr1:1q41
likely benign
NC_000001.11:g.(?_218405159)_(219273649_?)del deletion Loeys-Dietz syndrome 4 [RCV001824378] Chr1:218405159..219273649 [GRCh38]
Chr1:218578501..219446991 [GRCh37]
Chr1:1q41
likely pathogenic
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q41(chr1:219379258-222049547)x3 copy number gain not provided [RCV000848714] Chr1:219379258..222049547 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.589C>G (p.Leu197Val) single nucleotide variant not provided [RCV000886358] Chr1:219211603 [GRCh38]
Chr1:219384945 [GRCh37]
Chr1:1q41
benign
GRCh37/hg19 1q32.1-44(chr1:204045948-249218992)x3 copy number gain See cases [RCV001007407] Chr1:204045948..249218992 [GRCh37]
Chr1:1q32.1-44
pathogenic
GRCh37/hg19 1q32.2-44(chr1:210152794-249218992)x3 copy number gain See cases [RCV001194578] Chr1:210152794..249218992 [GRCh37]
Chr1:1q32.2-44
pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
GRCh37/hg19 1q41(chr1:219125125-219480797)x1 copy number loss not provided [RCV001834537] Chr1:219125125..219480797 [GRCh37]
Chr1:1q41
uncertain significance
Single allele deletion Loeys-Dietz syndrome 4 [RCV001837015] Chr1:215199578..223035427 [GRCh37]
Chr1:1q41
pathogenic
Single allele deletion Loeys-Dietz syndrome 4 [RCV001837012] Chr1:216243817..220231236 [GRCh37]
Chr1:1q41
pathogenic
Single allele deletion Loeys-Dietz syndrome 4 [RCV001837013] Chr1:217219510..219385296 [GRCh37]
Chr1:1q41
pathogenic
NC_000001.10:g.(?_218520044)_(220986760_?)del deletion Martsolf syndrome [RCV003116596] Chr1:218520044..220986760 [GRCh37]
Chr1:1q41
pathogenic
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44
pathogenic
NM_138794.5(LYPLAL1):c.29A>C (p.Gln10Pro) single nucleotide variant Inborn genetic diseases [RCV002859213] Chr1:219173919 [GRCh38]
Chr1:219347261 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.162A>G (p.Ile54Met) single nucleotide variant Inborn genetic diseases [RCV003012879] Chr1:219179217 [GRCh38]
Chr1:219352559 [GRCh37]
Chr1:1q41
uncertain significance
GRCh38/hg38 1q32.2-42.13(chr1:228006998-228061271)x2 copy number loss Orofacial cleft 2 [RCV002481175] Chr1:228006998..228061271 [GRCh38]
Chr1:1q32.2-42.13
association
NM_138794.5(LYPLAL1):c.545T>C (p.Val182Ala) single nucleotide variant Inborn genetic diseases [RCV002703912] Chr1:219211559 [GRCh38]
Chr1:219384901 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.39C>G (p.Ile13Met) single nucleotide variant Inborn genetic diseases [RCV002694024] Chr1:219173929 [GRCh38]
Chr1:219347271 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.254A>G (p.Asn85Ser) single nucleotide variant Inborn genetic diseases [RCV002645375] Chr1:219193144 [GRCh38]
Chr1:219366486 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.481C>T (p.Leu161Phe) single nucleotide variant Inborn genetic diseases [RCV002878732] Chr1:219211495 [GRCh38]
Chr1:219384837 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.491G>A (p.Ser164Asn) single nucleotide variant Inborn genetic diseases [RCV002896880] Chr1:219211505 [GRCh38]
Chr1:219384847 [GRCh37]
Chr1:1q41
likely benign
NM_138794.5(LYPLAL1):c.658A>G (p.Ile220Val) single nucleotide variant Inborn genetic diseases [RCV003201177] Chr1:219211672 [GRCh38]
Chr1:219385014 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.673A>G (p.Ile225Val) single nucleotide variant Inborn genetic diseases [RCV003216854] Chr1:219211687 [GRCh38]
Chr1:219385029 [GRCh37]
Chr1:1q41
uncertain significance
NM_138794.5(LYPLAL1):c.71T>C (p.Leu24Pro) single nucleotide variant Inborn genetic diseases [RCV003200700] Chr1:219173961 [GRCh38]
Chr1:219347303 [GRCh37]
Chr1:1q41
uncertain significance
GRCh37/hg19 1q41(chr1:214853277-222111742)x1 copy number loss not provided [RCV003484033] Chr1:214853277..222111742 [GRCh37]
Chr1:1q41
pathogenic
GRCh37/hg19 1q41(chr1:219125112-219387389)x3 copy number gain not provided [RCV003484051] Chr1:219125112..219387389 [GRCh37]
Chr1:1q41
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1288
Count of miRNA genes:377
Interacting mature miRNAs:407
Transcripts:ENST00000366927, ENST00000366928, ENST00000460522, ENST00000463964, ENST00000469590, ENST00000474379, ENST00000475724, ENST00000477938, ENST00000478794, ENST00000481007, ENST00000483635, ENST00000496776
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-76379  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371219,354,223 - 219,354,336UniSTSGRCh37
Build 361217,420,846 - 217,420,959RGDNCBI36
Celera1192,571,937 - 192,572,050RGD
Cytogenetic Map1q41UniSTS
HuRef1190,023,955 - 190,024,068UniSTS
TNG Radiation Hybrid Map199312.0UniSTS
GeneMap99-GB4 RH Map1707.23UniSTS
NCBI RH Map11902.7UniSTS
RH102683  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371219,363,679 - 219,363,800UniSTSGRCh37
Build 361217,430,302 - 217,430,423RGDNCBI36
Celera1192,581,401 - 192,581,522RGD
Cytogenetic Map1q41UniSTS
HuRef1190,033,419 - 190,033,540UniSTS
GeneMap99-GB4 RH Map1707.23UniSTS
SHGC-132850  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371219,385,998 - 219,386,187UniSTSGRCh37
Build 361217,452,621 - 217,452,810RGDNCBI36
Celera1192,603,731 - 192,603,920RGD
Cytogenetic Map1q41UniSTS
HuRef1190,055,748 - 190,055,937UniSTS
TNG Radiation Hybrid Map199286.0UniSTS
SHGC-53443  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371219,385,995 - 219,386,110UniSTSGRCh37
Build 361217,452,618 - 217,452,733RGDNCBI36
Celera1192,603,728 - 192,603,843RGD
Cytogenetic Map1q41UniSTS
HuRef1190,055,745 - 190,055,860UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 912 1425 1418 304 884 246 2793 720 1906 366 1094 1206 74 1 652 1660 6 1
Low 1527 1527 307 320 1031 219 1564 1473 1828 52 335 405 99 551 1128 1
Below cutoff 39 36 4 1 17 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001300769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001350628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001350629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001736968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002959345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007078569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA417842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA424278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC096642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL360093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL513283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW967835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY341430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF115063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI830985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX282451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB851909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS185550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA822882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY106571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000366927   ⟹   ENSP00000355894
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,875 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000366928   ⟹   ENSP00000355895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,878 - 219,212,858 (+)Ensembl
RefSeq Acc Id: ENST00000460522
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,869 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000463964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,895 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000469590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,174,194 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000474379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,927 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000475724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,198,543 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000477938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,884 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000478794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,174,971 - 219,211,530 (+)Ensembl
RefSeq Acc Id: ENST00000481007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,210,342 - 219,211,827 (+)Ensembl
RefSeq Acc Id: ENST00000483635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,896 - 219,212,865 (+)Ensembl
RefSeq Acc Id: ENST00000496776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,173,876 - 219,193,485 (+)Ensembl
RefSeq Acc Id: NM_001300769   ⟹   NP_001287698
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
CHM1_11220,619,986 - 220,659,032 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300770   ⟹   NP_001287699
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
CHM1_11220,619,986 - 220,659,032 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300771   ⟹   NP_001287700
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
CHM1_11220,620,326 - 220,659,032 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300772   ⟹   NP_001287701
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,174,961 - 219,212,858 (+)NCBI
CHM1_11220,621,124 - 220,659,032 (+)NCBI
T2T-CHM13v2.01218,410,931 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001350628   ⟹   NP_001337557
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001350629   ⟹   NP_001337558
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: NM_138794   ⟹   NP_620149
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,212,858 (+)NCBI
GRCh371219,347,192 - 219,386,207 (+)RGD
Build 361217,413,844 - 217,451,783 (+)NCBI Archive
Celera1192,564,906 - 192,603,940 (+)RGD
HuRef1190,016,930 - 190,055,957 (+)ENTREZGENE
CHM1_11220,619,986 - 220,659,032 (+)NCBI
T2T-CHM13v2.01218,409,848 - 218,448,839 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000271   ⟹   XP_016855760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,229,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047445134   ⟹   XP_047301090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,229,498 (+)NCBI
RefSeq Acc Id: XM_047445138   ⟹   XP_047301094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,229,498 (+)NCBI
RefSeq Acc Id: XM_054334310   ⟹   XP_054190285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,460,002 (+)NCBI
RefSeq Acc Id: XM_054334311   ⟹   XP_054190286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,460,002 (+)NCBI
RefSeq Acc Id: XM_054334312   ⟹   XP_054190287
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,460,002 (+)NCBI
RefSeq Acc Id: XM_054334313   ⟹   XP_054190288
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,446,555 (+)NCBI
RefSeq Acc Id: XR_001736964
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,334,736 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001736965
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,237,067 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001736967
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,445,496 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001736968
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,334,736 (+)NCBI
Sequence:
RefSeq Acc Id: XR_007078555
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,296,089 (+)NCBI
RefSeq Acc Id: XR_007078556
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,300,523 (+)NCBI
RefSeq Acc Id: XR_007078557
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,445,496 (+)NCBI
RefSeq Acc Id: XR_007078558
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,334,736 (+)NCBI
RefSeq Acc Id: XR_007078559
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,434,619 (+)NCBI
RefSeq Acc Id: XR_007078560
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,296,089 (+)NCBI
RefSeq Acc Id: XR_007078561
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,432,909 (+)NCBI
RefSeq Acc Id: XR_007078562
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,445,496 (+)NCBI
RefSeq Acc Id: XR_007078563
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,334,736 (+)NCBI
RefSeq Acc Id: XR_007078564
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,445,496 (+)NCBI
RefSeq Acc Id: XR_007078565
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,296,089 (+)NCBI
RefSeq Acc Id: XR_007078566
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,237,067 (+)NCBI
RefSeq Acc Id: XR_007078567
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,300,522 (+)NCBI
RefSeq Acc Id: XR_007078568
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,296,089 (+)NCBI
RefSeq Acc Id: XR_007078569
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,237,067 (+)NCBI
RefSeq Acc Id: XR_008485911
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,491 (+)NCBI
RefSeq Acc Id: XR_008485912
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,474,092 (+)NCBI
RefSeq Acc Id: XR_008485913
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,484 (+)NCBI
RefSeq Acc Id: XR_008485914
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,670,898 (+)NCBI
RefSeq Acc Id: XR_008485915
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,489 (+)NCBI
RefSeq Acc Id: XR_008485916
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,669,188 (+)NCBI
RefSeq Acc Id: XR_008485917
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,681,408 (+)NCBI
RefSeq Acc Id: XR_008485918
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,681,408 (+)NCBI
RefSeq Acc Id: XR_008485919
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,611,207 (+)NCBI
RefSeq Acc Id: XR_008485920
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,681,408 (+)NCBI
RefSeq Acc Id: XR_008485921
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,489 (+)NCBI
RefSeq Acc Id: XR_008485922
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,474,090 (+)NCBI
RefSeq Acc Id: XR_008485923
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,483 (+)NCBI
RefSeq Acc Id: XR_008485924
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,611,207 (+)NCBI
RefSeq Acc Id: XR_008485925
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,536,492 (+)NCBI
RefSeq Acc Id: XR_008485926
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01218,409,848 - 218,474,093 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001287698 (Get FASTA)   NCBI Sequence Viewer  
  NP_001287699 (Get FASTA)   NCBI Sequence Viewer  
  NP_001287700 (Get FASTA)   NCBI Sequence Viewer  
  NP_001287701 (Get FASTA)   NCBI Sequence Viewer  
  NP_001337557 (Get FASTA)   NCBI Sequence Viewer  
  NP_001337558 (Get FASTA)   NCBI Sequence Viewer  
  NP_620149 (Get FASTA)   NCBI Sequence Viewer  
  XP_016855760 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301090 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301094 (Get FASTA)   NCBI Sequence Viewer  
  XP_054190285 (Get FASTA)   NCBI Sequence Viewer  
  XP_054190286 (Get FASTA)   NCBI Sequence Viewer  
  XP_054190287 (Get FASTA)   NCBI Sequence Viewer  
  XP_054190288 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16711 (Get FASTA)   NCBI Sequence Viewer  
  AAQ17077 (Get FASTA)   NCBI Sequence Viewer  
  BAF84231 (Get FASTA)   NCBI Sequence Viewer  
  BAG53925 (Get FASTA)   NCBI Sequence Viewer  
  CAJ42731 (Get FASTA)   NCBI Sequence Viewer  
  EAW93319 (Get FASTA)   NCBI Sequence Viewer  
  EAW93320 (Get FASTA)   NCBI Sequence Viewer  
  EAW93321 (Get FASTA)   NCBI Sequence Viewer  
  EAW93322 (Get FASTA)   NCBI Sequence Viewer  
  EAW93323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000355894
  ENSP00000355894.3
  ENSP00000355895
  ENSP00000355895.5
GenBank Protein Q5VWZ2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620149   ⟸   NM_138794
- Peptide Label: isoform a
- UniProtKB: Q7Z4A3 (UniProtKB/Swiss-Prot),   Q5VWZ3 (UniProtKB/Swiss-Prot),   A8K677 (UniProtKB/Swiss-Prot),   Q96AV0 (UniProtKB/Swiss-Prot),   Q5VWZ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287699   ⟸   NM_001300770
- Peptide Label: isoform c
- UniProtKB: Q5VWZ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287698   ⟸   NM_001300769
- Peptide Label: isoform b
- UniProtKB: Q5VWZ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287700   ⟸   NM_001300771
- Peptide Label: isoform d
- UniProtKB: Q5VWZ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287701   ⟸   NM_001300772
- Peptide Label: isoform d
- UniProtKB: Q5VWZ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016855760   ⟸   XM_017000271
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001337557   ⟸   NM_001350628
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: NP_001337558   ⟸   NM_001350629
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: ENSP00000355894   ⟸   ENST00000366927
RefSeq Acc Id: ENSP00000355895   ⟸   ENST00000366928
RefSeq Acc Id: XP_047301090   ⟸   XM_047445134
- Peptide Label: isoform X2
- UniProtKB: Q7Z4A3 (UniProtKB/Swiss-Prot),   Q5VWZ3 (UniProtKB/Swiss-Prot),   Q5VWZ2 (UniProtKB/Swiss-Prot),   A8K677 (UniProtKB/Swiss-Prot),   Q96AV0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047301094   ⟸   XM_047445138
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054190285   ⟸   XM_054334310
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054190286   ⟸   XM_054334311
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054190287   ⟸   XM_054334312
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054190288   ⟸   XM_054334313
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VWZ2-F1-model_v2 AlphaFold Q5VWZ2 1-237 view protein structure

Promoters
RGD ID:6785979
Promoter ID:HG_KWN:7364
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000090208,   OTTHUMT00000090212,   OTTHUMT00000090213,   OTTHUMT00000090216,   OTTHUMT00000090217,   UC001HLR.2,   UC001HLS.2,   UC001HLT.2,   UC009XDS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361217,413,589 - 217,414,089 (+)MPROMDB
RGD ID:6785978
Promoter ID:HG_KWN:7365
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000098800
Position:
Human AssemblyChrPosition (strand)Source
Build 361217,414,816 - 217,415,316 (+)MPROMDB
RGD ID:6859016
Promoter ID:EPDNEW_H2672
Type:initiation region
Name:LYPLAL1_1
Description:lysophospholipase like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381219,173,878 - 219,173,938EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20440 AgrOrtholog
COSMIC LYPLAL1 COSMIC
Ensembl Genes ENSG00000143353 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000366927 ENTREZGENE
  ENST00000366927.3 UniProtKB/Swiss-Prot
  ENST00000366928 ENTREZGENE
  ENST00000366928.10 UniProtKB/Swiss-Prot
  ENST00000463964 ENTREZGENE
  ENST00000474379 ENTREZGENE
  ENST00000477938 ENTREZGENE
  ENST00000483635 ENTREZGENE
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000143353 GTEx
HGNC ID HGNC:20440 ENTREZGENE
Human Proteome Map LYPLAL1 Human Proteome Map
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase/COase/thioEstase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:127018 UniProtKB/Swiss-Prot
NCBI Gene 127018 ENTREZGENE
OMIM 616548 OMIM
PANTHER LYSOPHOSPHOLIPASE-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYSOPHOSPHOLIPASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Abhydrolase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134986975 PharmGKB
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K677 ENTREZGENE
  B3KVW3_HUMAN UniProtKB/TrEMBL
  LYPL1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5VWZ3 ENTREZGENE
  Q7Z4A3 ENTREZGENE
  Q96AV0 ENTREZGENE
UniProt Secondary A8K677 UniProtKB/Swiss-Prot
  D3DTA7 UniProtKB/TrEMBL
  Q5VWZ3 UniProtKB/Swiss-Prot
  Q7Z4A3 UniProtKB/Swiss-Prot
  Q96AV0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 LYPLAL1  lysophospholipase like 1    lysophospholipase-like 1  Symbol and/or name change 5135510 APPROVED