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Gene: COL16A1 (collagen type XVI alpha 1 chain) Homo sapiens
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Symbol: COL16A1
Name: collagen type XVI alpha 1 chain
Description: Exhibits integrin binding activity. Involved in cell adhesion mediated by integrin; integrin activation; and positive regulation of focal adhesion assembly. Localizes to the collagen-containing extracellular matrix.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 447AA; alpha 1 type XVI collagen; collagen alpha-1(XVI) chain; collagen type XVI alpha 1; collagen XVI, alpha-1 polypeptide; collagen, type XVI, alpha 1; FP1572
Orthologs:
Mus musculus (house mouse) : Col16a1 (collagen, type XVI, alpha 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : Col16a1 (collagen type XVI alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col16a1 (collagen type XVI alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL16A1 (collagen type XVI alpha 1 chain)
Canis lupus familiaris (dog) : COL16A1 (collagen type XVI alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col16a1 (collagen type XVI alpha 1 chain)
Sus scrofa (pig) : COL16A1 (collagen type XVI alpha 1 chain)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,652,263 - 31,704,162 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37132,117,848 - 32,169,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,890,435 - 31,942,355 (-)NCBINCBI36hg18NCBI36
Build 34131,786,940 - 31,838,742NCBI
Celera130,387,074 - 30,438,996 (-)NCBI
Cytogenetic Map1p35.2NCBI
HuRef130,235,356 - 30,287,265 (-)NCBIHuRef
CHM1_1132,233,644 - 32,285,563 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters
Clinical Variants

Additional Information

External Database Links
Nomenclature History
 
More on COL16A1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: hg19 hg38
HGNC Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1322191
Created: 2005-01-12
Species: Homo sapiens
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.