Snrnp27 (small nuclear ribonucleoprotein 27 (U4/U6.U5))

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Gene: Snrnp27 (small nuclear ribonucleoprotein 27 (U4/U6.U5)) Mus musculus

Analyze

Symbol:

Snrnp27

Name:

small nuclear ribonucleoprotein 27 (U4/U6.U5)

RGD ID:

1322108

MGI Page

MGI

Description:

Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

2610209M04Rik; AI449063; AU022368; putative nucleic acid binding protein RY-1; Ry1; U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; U4/U6.U5 snRNP 27 kDa protein; U4/U6.U5 tri-snRNP-associated protein 3; U4/U6.U5-27K

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	86,652,151 - 86,661,473 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	86,652,133 - 86,661,504 (-)	Ensembl
GRCm38	6	86,675,169 - 86,684,491 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	86,675,151 - 86,684,522 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	86,625,163 - 86,634,485 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	86,640,803 - 86,650,125 (-)	NCBI			mm8
Celera	6	88,612,797 - 88,622,344 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

aflatoxin B1 (ISO)

avobenzone (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

crocidolite asbestos (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

indole-3-methanol (ISO)

methyl methanesulfonate (ISO)

selenium atom (ISO)

sodium fluoride (EXP)

sulindac (ISO)

titanium dioxide (EXP)

tolcapone (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vitamin E (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

mRNA processing (IEA)

RNA splicing (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal esophagus morphology (IEA)

abnormal sinus arrhythmia (IEA)

decreased fasting circulating glucose level (IEA)

embryonic lethality prior to organogenesis (IEA)

embryonic lethality prior to tooth bud stage (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	MGD data from the GO Consortium
2.	Pipeline to import KEGG annotations from KEGG into RGD
3.	RGD automated import pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:14610273	PMID:15489334	PMID:15782199
PMID:16141072	PMID:16141073	PMID:18799693	PMID:21677750	PMID:27626380	PMID:32325033

Genomics

Comparative Map Data

Snrnp27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	86,652,151 - 86,661,473 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	86,652,133 - 86,661,504 (-)	Ensembl
GRCm38	6	86,675,169 - 86,684,491 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	86,675,151 - 86,684,522 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	86,625,163 - 86,634,485 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	86,640,803 - 86,650,125 (-)	NCBI			mm8
Celera	6	88,612,797 - 88,622,344 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI

SNRNP27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	69,893,956 - 69,905,575 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	69,893,956 - 69,905,236 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	70,121,088 - 70,132,368 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	69,974,594 - 69,985,853 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	2	69,972,266 - 69,983,527 (+)	NCBI
Cytogenetic Map	2	p13.3	NCBI
HuRef	2	69,857,032 - 69,868,320 (+)	NCBI		HuRef
CHM1_1	2	70,050,725 - 70,062,018 (+)	NCBI		CHM1_1

Snrnp27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	119,123,676 - 119,133,234 (-)	NCBI
Rnor_6.0 Ensembl	4	118,478,075 - 118,534,280 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	118,478,075 - 118,487,633 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	183,048,089 - 183,057,647 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	120,828,680 - 120,838,238 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	121,073,178 - 121,082,871 (-)	NCBI
Celera	4	108,093,738 - 108,103,296 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Snrnp27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	15,238,793 - 15,252,244 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	15,243,190 - 15,251,831 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNRNP27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	71,054,108 - 71,065,343 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	71,054,108 - 71,065,343 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	69,936,640 - 69,947,971 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SNRNP27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	10	68,531,253 - 68,541,225 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	68,531,541 - 68,541,233 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Snrnp27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936491	14,106,124 - 14,118,823 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNRNP27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	72,551,749 - 72,565,954 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	72,556,127 - 72,566,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	75,950,669 - 75,960,564 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNRNP27
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	37,217,877 - 37,228,441 (-)	NCBI
ChlSab1.1 Ensembl	14	37,218,122 - 37,228,407 (-)	Ensembl

Snrnp27
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624762	3,494,301 - 3,503,456 (-)	NCBI

Position Markers

AU022368

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	86,675,257 - 86,675,483	UniSTS	GRCm38
MGSCv37	6	86,625,251 - 86,625,477	UniSTS	GRCm37
Celera	6	88,612,885 - 88,613,111	UniSTS
Cytogenetic Map	6	D1	UniSTS
Whitehead/MRC_RH	6	892.35	UniSTS

AI449063

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	86,675,279 - 86,675,377	UniSTS	GRCm38
MGSCv37	6	86,625,273 - 86,625,371	UniSTS	GRCm37
Celera	6	88,612,907 - 88,613,005	UniSTS
Cytogenetic Map	6	D1	UniSTS
Whitehead/MRC_RH	6	887.0	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	395
Count of miRNA genes:	298
Interacting mature miRNAs:	323
Transcripts:	ENSMUST00000001186, ENSMUST00000113683, ENSMUST00000131674, ENSMUST00000133404
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_025665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC158662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK210627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000001186 ⟹ ENSMUSP00000001186

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	86,675,151 - 86,684,522 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113683 ⟹ ENSMUSP00000109313

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	86,675,672 - 86,684,522 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000131674

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	86,675,405 - 86,684,491 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000133404

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	86,682,676 - 86,684,517 (-)	Ensembl

RefSeq Acc Id:

NM_025665 ⟹ NP_079941

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	86,652,151 - 86,661,473 (-)	NCBI
GRCm38	6	86,675,169 - 86,684,491 (-)	NCBI
MGSCv37	6	86,625,163 - 86,634,485 (-)	RGD
Celera	6	88,612,797 - 88,622,344 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GGAGGACTCCGATGGGTCGAAGTCGTAGCCGCTCCCCGCGTAGGGAACGTAGGCGGTCCCGGTC
CACATCTCGGGATCGAGAAAGAAGACGCCGAGAAAGGTCCAGGTCCAGGGAGAGAGATCGCAGA
AGGAGCCGCTCAAGATCTCCACACCGAAGACGCTCCAGGTCTCCAAGACGACATAGATCCACAT
CTCCCTCCCCTTCTCGACTGAAAGAAAGAAGAGATGAGGAAAAGAAAGAAACTAAAGAAATAAA
GAACAAAGAACGGCAGATCACTGAGGAAGACCTGGAGGGTAAAACAGAGGAAGAAATAGAAATG
ATGAAATTAATGGGATTTGCCTCTTTTGACTCCACAAAAGGGAAGAAGGTAGACGGCTCTGTAA
ATGCCTATGCCATCAACGTGTCTCAAAAGAGGAAGTACAGGCAGTACATGAATCGAAAAGGCGG
ATTCAACAGACCTCTGGATTTTATTGCATGAAACTTGAGGTGTTGGATGGAGGATTTCCCCCAC
CCTCGTCTGGGTCAGAGAGTATTTTATATTTTATATTTAATACACATCAAAACAGGATCTTGAT
TCTTCCTTCTTATAAAGTAAGAAAGTCTTATTTATGACACCCAGTTTACTTACTTTTCAAGGCA
ATGTCCCTGGGATGGCCACCAGCCCTTTTGTCTGTCCTTGTTCCTTTGAAACTGTGTGTGCTGT
CTTCTTGGATGCTTGCTAGGTGTTCTTAAAAACTGAAAGTGAATTGCATACATTTCCCCAATAA
AACAATGTTTCTACCCATTTTATATTTATTTGACAAATATCTTTATTACTAGATTAAAGAGTCT
CCCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_079941	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH27564	(Get FASTA)	NCBI Sequence Viewer
	BAB27926	(Get FASTA)	NCBI Sequence Viewer
	BAC32271	(Get FASTA)	NCBI Sequence Viewer
	BAE35683	(Get FASTA)	NCBI Sequence Viewer
	EDK99191	(Get FASTA)	NCBI Sequence Viewer
	EDK99192	(Get FASTA)	NCBI Sequence Viewer
	Q8K194	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_079941 ⟸ NM_025665
- UniProtKB:	Q8K194 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGRSRSRSPRRERRRSRSTSRDRERRRRERSRSRERDRRRSRSRSPHRRRSRSPRRHRSTSPSP SRLKERRDEEKKETKEIKNKERQITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYA INVSQKRKYRQYMNRKGGFNRPLDFIA hide sequence

RefSeq Acc Id:

ENSMUSP00000109313 ⟸ ENSMUST00000113683

RefSeq Acc Id:

ENSMUSP00000001186 ⟸ ENSMUST00000001186

Promoters

RGD ID:

6840010

Promoter ID:

MM_KWN:46747

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000113683, OTTMUST00000059058, OTTMUST00000059060, OTTMUST00000059061

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	86,634,231 - 86,634,731 (-)	MPROMDB

RGD ID:

6890300

Promoter ID:

EPDNEW_M8601

Type:

initiation region

Name:

Snrnp27_1

Description:

Mus musculus small nuclear ribonucleoprotein 27 (U4/U6.U5) ,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	86,684,518 - 86,684,578	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913868	AgrOrtholog
Ensembl Genes	ENSMUSG00000001158	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000001186	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000109313	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000001186	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000113683	UniProtKB/Swiss-Prot
InterPro	SNRNP27	UniProtKB/Swiss-Prot
KEGG Report	mmu:66618	UniProtKB/Swiss-Prot
MGD	MGI:1913868	ENTREZGENE
NCBI Gene	66618	ENTREZGENE
Pfam	SNRNP27	UniProtKB/Swiss-Prot
PhenoGen	Snrnp27	PhenoGen
UniProt	Q8K194	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q8BRA8	UniProtKB/Swiss-Prot
	Q9CSV0	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)