Sema6d (sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D) - Rat Genome Database

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Gene: Sema6d (sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D) Mus musculus
Analyze
Symbol: Sema6d
Name: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
RGD ID: 1322087
MGI Page MGI
Description: Enables semaphorin receptor binding activity. Acts upstream of or within negative regulation of smooth muscle cell migration; positive regulation of smooth muscle cell migration; and ventricular system development. Located in collagen-containing extracellular matrix. Is expressed in several structures, including central nervous system; gut mesenchyme; retina; spinal ganglion or nerve; and vascular element. Orthologous to human SEMA6D (semaphorin 6D).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110067B02Rik; AA409156; D330011G23; mKIAA1479; Sema6D-1; Sema6D-2; Sema6D-4; Sema6D-5; Sema6D-6; semaphorin 6D; semaphorin-6D
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392123,931,089 - 124,509,711 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2123,931,889 - 124,509,690 (+)EnsemblGRCm39 Ensembl
GRCm382124,089,943 - 124,667,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2124,089,969 - 124,667,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,436,032 - 124,493,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362124,301,737 - 124,359,211 (+)NCBIMGSCv36mm8
Celera2125,867,812 - 125,925,326 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map260.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
antimycin A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
azoxystrobin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
C60 fullerene  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
clofibric acid  (ISO)
coumarin  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
gentamycin  (ISO)
lead(0)  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
phenylephrine  (ISO)
picoxystrobin  (ISO)
poly(I:C)  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Identification, characterization, and functional study of the two novel human members of the semaphorin gene family. Qu X, etal., J Biol Chem 2002 Sep 20;277(38):35574-85.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14715272   PMID:14977921   PMID:15489334   PMID:15543137   PMID:16141072  
PMID:16141073   PMID:16284245   PMID:16446784   PMID:16602821   PMID:17082620   PMID:17145500   PMID:18617019   PMID:18728195   PMID:18799693   PMID:19243017   PMID:20436479   PMID:20512151  
PMID:21267068   PMID:21677750   PMID:21831918   PMID:21862448   PMID:21873635   PMID:22615585   PMID:22632726   PMID:23646199   PMID:24179230   PMID:24733831   PMID:24952961   PMID:25975775  
PMID:26494787   PMID:26633812   PMID:27113764   PMID:28071719   PMID:28164238   PMID:28172500   PMID:28378742   PMID:28453731   PMID:28751609   PMID:29031500   PMID:29777213   PMID:31042497  
PMID:32325033   PMID:34321999   PMID:35462405   PMID:35864120   PMID:35933488   PMID:36174325   PMID:37344233   PMID:38329122  


Genomics

Comparative Map Data
Sema6d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392123,931,089 - 124,509,711 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2123,931,889 - 124,509,690 (+)EnsemblGRCm39 Ensembl
GRCm382124,089,943 - 124,667,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2124,089,969 - 124,667,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,436,032 - 124,493,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362124,301,737 - 124,359,211 (+)NCBIMGSCv36mm8
Celera2125,867,812 - 125,925,326 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map260.69NCBI
SEMA6D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381547,184,089 - 47,774,228 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1547,184,101 - 47,774,228 (+)EnsemblGRCh38hg38GRCh38
GRCh371547,476,286 - 48,066,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361545,797,978 - 45,853,712 (+)NCBINCBI36Build 36hg18NCBI36
Celera1524,903,126 - 24,958,881 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1524,302,572 - 24,898,941 (+)NCBIHuRef
CHM1_11547,594,350 - 48,184,622 (+)NCBICHM1_1
T2T-CHM13v2.01544,992,008 - 45,582,270 (+)NCBIT2T-CHM13v2.0
Sema6d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83131,801,680 - 132,394,578 (+)NCBIGRCr8
mRatBN7.23111,883,415 - 111,941,100 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3111,883,872 - 111,941,094 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3115,741,529 - 115,798,821 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,337,085 - 124,394,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03121,997,462 - 122,054,751 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03116,899,906 - 116,958,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3116,899,878 - 116,958,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,424,951 - 123,482,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43111,890,235 - 111,948,388 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13111,742,306 - 111,851,550 (+)NCBI
Celera3110,744,441 - 110,801,657 (+)NCBICelera
Cytogenetic Map3q36NCBI
Sema6d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554096,086,113 - 6,143,713 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554096,086,178 - 6,143,702 (-)NCBIChiLan1.0ChiLan1.0
SEMA6D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21636,429,165 - 37,017,139 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11540,606,996 - 41,198,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01526,135,344 - 26,725,571 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11544,877,322 - 45,050,169 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1544,994,073 - 45,050,169 (+)Ensemblpanpan1.1panPan2
SEMA6D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13013,489,896 - 14,059,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,005,124 - 14,057,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3013,809,483 - 13,981,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03014,020,140 - 14,192,698 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3014,136,625 - 14,192,698 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13014,061,291 - 14,115,720 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03014,060,041 - 14,231,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03014,170,816 - 14,342,932 (+)NCBIUU_Cfam_GSD_1.0
Sema6d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864091,663,555 - 92,243,636 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647110,077,222 - 10,089,286 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647110,036,279 - 10,091,699 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA6D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,987,528 - 124,043,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,987,528 - 124,586,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21138,042,345 - 138,421,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA6D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,511,593 - 36,095,816 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2635,511,594 - 35,526,130 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048105,001,970 - 105,583,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema6d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473111,914,422 - 11,970,138 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473111,914,530 - 12,269,463 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sema6d
18198 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4940
Count of miRNA genes:618
Interacting mature miRNAs:761
Transcripts:ENSMUST00000051419, ENSMUST00000076335, ENSMUST00000077847, ENSMUST00000078621, ENSMUST00000103238, ENSMUST00000103239, ENSMUST00000103240, ENSMUST00000103241, ENSMUST00000132088, ENSMUST00000137172, ENSMUST00000151199
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115430481124741920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118356772125048872Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse

Markers in Region
RH124827  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382124,665,315 - 124,665,465UniSTSGRCm38
MGSCv372124,491,051 - 124,491,201UniSTSGRCm37
Celera2125,922,871 - 125,923,021UniSTS
Cytogenetic Map2F1UniSTS
D15S1223  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382124,667,567 - 124,667,745UniSTSGRCm38
MGSCv372124,493,303 - 124,493,481UniSTSGRCm37
Celera2125,925,123 - 125,925,301UniSTS
Cytogenetic Map2F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB091532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB091533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB091534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB091535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB091536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY242475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000051419   ⟹   ENSMUSP00000061123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,216 - 124,507,877 (+)Ensembl
GRCm38.p6 Ensembl2124,610,296 - 124,665,957 (+)Ensembl
RefSeq Acc Id: ENSMUST00000076335   ⟹   ENSMUSP00000075674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,216 - 124,509,689 (+)Ensembl
GRCm38.p6 Ensembl2124,610,296 - 124,667,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000077847   ⟹   ENSMUSP00000077014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,216 - 124,509,689 (+)Ensembl
GRCm38.p6 Ensembl2124,610,296 - 124,667,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000078621   ⟹   ENSMUSP00000077691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,216 - 124,509,689 (+)Ensembl
GRCm38.p6 Ensembl2124,610,296 - 124,667,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000103238   ⟹   ENSMUSP00000099528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,495,555 - 124,507,229 (+)Ensembl
GRCm38.p6 Ensembl2124,653,635 - 124,665,309 (+)Ensembl
RefSeq Acc Id: ENSMUST00000103239   ⟹   ENSMUSP00000099529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,493 - 124,509,690 (+)Ensembl
GRCm38.p6 Ensembl2124,610,573 - 124,667,770 (+)Ensembl
RefSeq Acc Id: ENSMUST00000103240   ⟹   ENSMUSP00000099530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,521 - 124,507,877 (+)Ensembl
GRCm38.p6 Ensembl2124,610,601 - 124,665,957 (+)Ensembl
RefSeq Acc Id: ENSMUST00000103241   ⟹   ENSMUSP00000099531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2123,931,889 - 124,509,689 (+)Ensembl
GRCm38.p6 Ensembl2124,089,969 - 124,667,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2124,452,026 - 124,504,805 (+)Ensembl
GRCm38.p6 Ensembl2124,610,106 - 124,662,885 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2123,931,889 - 123,985,273 (+)Ensembl
GRCm38.p6 Ensembl2124,089,969 - 124,143,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2123,984,925 - 124,349,621 (+)Ensembl
GRCm38.p6 Ensembl2124,143,005 - 124,507,701 (+)Ensembl
RefSeq Acc Id: NM_001290997   ⟹   NP_001277926
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,902 - 124,509,711 (+)NCBI
GRCm382124,089,969 - 124,667,789 (+)NCBI
Celera2125,350,043 - 125,925,345 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291000   ⟹   NP_001277929
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,520 - 124,509,711 (+)NCBI
GRCm382124,610,296 - 124,667,789 (+)NCBI
Celera2125,350,043 - 125,925,345 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001407285   ⟹   NP_001394214
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,520 - 124,509,711 (+)NCBI
RefSeq Acc Id: NM_172537   ⟹   NP_766125
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,520 - 124,509,711 (+)NCBI
GRCm382124,610,296 - 124,667,789 (+)NCBI
MGSCv372124,436,032 - 124,493,506 (+)RGD
Celera2125,350,043 - 125,925,345 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199238   ⟹   NP_954708
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,520 - 124,509,711 (+)NCBI
GRCm382124,610,296 - 124,667,789 (+)NCBI
MGSCv372124,436,032 - 124,493,506 (+)RGD
Celera2125,350,043 - 125,925,345 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199239   ⟹   NP_954709
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,495,501 - 124,509,711 (+)NCBI
GRCm382124,653,581 - 124,667,789 (+)NCBI
MGSCv372124,436,032 - 124,493,506 (+)RGD
Celera2125,350,043 - 125,925,345 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199240   ⟹   NP_954710
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,495,501 - 124,509,711 (+)NCBI
GRCm382124,653,581 - 124,667,789 (+)NCBI
MGSCv372124,436,032 - 124,493,506 (+)RGD
Celera2125,350,043 - 125,925,345 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199241   ⟹   NP_954711
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,495,501 - 124,509,711 (+)NCBI
GRCm382124,653,581 - 124,667,789 (+)NCBI
MGSCv372124,436,032 - 124,493,506 (+)RGD
Celera2125,350,043 - 125,925,345 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499111   ⟹   XP_006499174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,206 - 124,509,692 (+)NCBI
GRCm382124,610,286 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499112   ⟹   XP_006499175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,090,063 - 124,667,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499113   ⟹   XP_006499176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499114   ⟹   XP_006499177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,453,749 - 124,509,692 (+)NCBI
GRCm382124,611,813 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239427   ⟹   XP_011237729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,089,943 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317001   ⟹   XP_017172490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,206 - 124,509,692 (+)NCBI
GRCm382124,610,286 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317012   ⟹   XP_017172501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,452,206 - 124,509,692 (+)NCBI
GRCm382124,610,286 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249334   ⟹   XP_030105194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,090,179 - 124,667,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249343   ⟹   XP_030105203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249345   ⟹   XP_030105205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,453,762 - 124,509,692 (+)NCBI
GRCm382124,611,820 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249347   ⟹   XP_030105207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249351   ⟹   XP_030105211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,453,762 - 124,509,692 (+)NCBI
GRCm382124,611,820 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249357   ⟹   XP_030105217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249361   ⟹   XP_030105221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249365   ⟹   XP_030105225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,089,943 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249366   ⟹   XP_030105226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249368   ⟹   XP_030105228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249369   ⟹   XP_030105229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,089,943 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249371   ⟹   XP_030105231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249372   ⟹   XP_030105232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
GRCm382124,089,943 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249373   ⟹   XP_030105233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392124,440,997 - 124,509,692 (+)NCBI
GRCm382124,601,585 - 124,667,772 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160283   ⟹   XP_036016176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,932,586 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160285   ⟹   XP_036016178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,932,620 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160288   ⟹   XP_036016181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,932,593 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160290   ⟹   XP_036016183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160291   ⟹   XP_036016184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160298   ⟹   XP_036016191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160303   ⟹   XP_036016196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160310   ⟹   XP_036016203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160315   ⟹   XP_036016208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160325   ⟹   XP_036016218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160326   ⟹   XP_036016219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160329   ⟹   XP_036016222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,509,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160331   ⟹   XP_036016224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160332   ⟹   XP_036016225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160333   ⟹   XP_036016226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160334   ⟹   XP_036016227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160335   ⟹   XP_036016228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,213 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160336   ⟹   XP_036016229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,507,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160337   ⟹   XP_036016230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392123,931,089 - 124,506,033 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001277926 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277929 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394214 (Get FASTA)   NCBI Sequence Viewer  
  NP_766125 (Get FASTA)   NCBI Sequence Viewer  
  NP_954708 (Get FASTA)   NCBI Sequence Viewer  
  NP_954709 (Get FASTA)   NCBI Sequence Viewer  
  NP_954710 (Get FASTA)   NCBI Sequence Viewer  
  NP_954711 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499174 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499175 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499176 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499177 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237729 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172490 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172501 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105194 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105203 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105205 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105207 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105211 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105217 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105221 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105225 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105226 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105228 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105229 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105231 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105232 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105233 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016176 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016178 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016181 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016183 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016184 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016191 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016196 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016203 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016208 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016218 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016219 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016222 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016224 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016225 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016226 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016227 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016228 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016229 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016230 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH60680 (Get FASTA)   NCBI Sequence Viewer  
  BAC34891 (Get FASTA)   NCBI Sequence Viewer  
  BAC65797 (Get FASTA)   NCBI Sequence Viewer  
  BAD05168 (Get FASTA)   NCBI Sequence Viewer  
  BAD05169 (Get FASTA)   NCBI Sequence Viewer  
  BAD05170 (Get FASTA)   NCBI Sequence Viewer  
  BAD05171 (Get FASTA)   NCBI Sequence Viewer  
  BAD05172 (Get FASTA)   NCBI Sequence Viewer  
  EDL28118 (Get FASTA)   NCBI Sequence Viewer  
  EDL28119 (Get FASTA)   NCBI Sequence Viewer  
  EDL28120 (Get FASTA)   NCBI Sequence Viewer  
  EDL28121 (Get FASTA)   NCBI Sequence Viewer  
  EDL28122 (Get FASTA)   NCBI Sequence Viewer  
  EDL28123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000061123
  ENSMUSP00000061123.9
  ENSMUSP00000075674
  ENSMUSP00000075674.6
  ENSMUSP00000077014
  ENSMUSP00000077014.6
  ENSMUSP00000077691
  ENSMUSP00000077691.6
  ENSMUSP00000099528
  ENSMUSP00000099528.2
  ENSMUSP00000099529
  ENSMUSP00000099529.4
  ENSMUSP00000099530
  ENSMUSP00000099530.3
  ENSMUSP00000099531
  ENSMUSP00000099531.2
GenBank Protein Q76KF0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_766125   ⟸   NM_172537
- Peptide Label: isoform Sema6D-1 precursor
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_954709   ⟸   NM_199239
- Peptide Label: isoform Sema6D-5 precursor
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_954711   ⟸   NM_199241
- Peptide Label: isoform Sema6D-4 precursor
- UniProtKB: Q76KF4 (UniProtKB/Swiss-Prot),   Q76KF3 (UniProtKB/Swiss-Prot),   Q76KF2 (UniProtKB/Swiss-Prot),   Q76KF1 (UniProtKB/Swiss-Prot),   A2AW72 (UniProtKB/Swiss-Prot),   Q80TD0 (UniProtKB/Swiss-Prot),   Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_954710   ⟸   NM_199240
- Peptide Label: isoform Sema6D-6 precursor
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_954708   ⟸   NM_199238
- Peptide Label: isoform Sema6D-2 precursor
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499175   ⟸   XM_006499112
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006499176   ⟸   XM_006499113
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006499174   ⟸   XM_006499111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006499177   ⟸   XM_006499114
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001277926   ⟸   NM_001290997
- Peptide Label: isoform Sema6D-2 precursor
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237729   ⟸   XM_011239427
- Peptide Label: isoform X7
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277929   ⟸   NM_001291000
- Peptide Label: isoform 3 precursor
- UniProtKB: A2AW73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172490   ⟸   XM_017317001
- Peptide Label: isoform X3
- UniProtKB: Q76KF4 (UniProtKB/Swiss-Prot),   Q76KF3 (UniProtKB/Swiss-Prot),   Q76KF2 (UniProtKB/Swiss-Prot),   Q76KF1 (UniProtKB/Swiss-Prot),   A2AW72 (UniProtKB/Swiss-Prot),   Q80TD0 (UniProtKB/Swiss-Prot),   Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017172501   ⟸   XM_017317012
- Peptide Label: isoform X7
- UniProtKB: Q76KF0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030105229   ⟸   XM_030249369
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030105225   ⟸   XM_030249365
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030105232   ⟸   XM_030249372
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030105194   ⟸   XM_030249334
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105217   ⟸   XM_030249357
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030105231   ⟸   XM_030249371
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030105203   ⟸   XM_030249343
- Peptide Label: isoform X3
- UniProtKB: Q76KF4 (UniProtKB/Swiss-Prot),   Q76KF3 (UniProtKB/Swiss-Prot),   Q76KF2 (UniProtKB/Swiss-Prot),   Q76KF1 (UniProtKB/Swiss-Prot),   Q76KF0 (UniProtKB/Swiss-Prot),   A2AW72 (UniProtKB/Swiss-Prot),   Q80TD0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030105207   ⟸   XM_030249347
- Peptide Label: isoform X4
- UniProtKB: A2AW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105228   ⟸   XM_030249368
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030105221   ⟸   XM_030249361
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030105226   ⟸   XM_030249366
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030105233   ⟸   XM_030249373
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030105205   ⟸   XM_030249345
- Peptide Label: isoform X3
- UniProtKB: Q76KF4 (UniProtKB/Swiss-Prot),   Q76KF3 (UniProtKB/Swiss-Prot),   Q76KF2 (UniProtKB/Swiss-Prot),   Q76KF1 (UniProtKB/Swiss-Prot),   Q76KF0 (UniProtKB/Swiss-Prot),   A2AW72 (UniProtKB/Swiss-Prot),   Q80TD0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030105211   ⟸   XM_030249351
- Peptide Label: isoform X4
- UniProtKB: A2AW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000061123   ⟸   ENSMUST00000051419
RefSeq Acc Id: ENSMUSP00000075674   ⟸   ENSMUST00000076335
RefSeq Acc Id: ENSMUSP00000077691   ⟸   ENSMUST00000078621
RefSeq Acc Id: ENSMUSP00000099531   ⟸   ENSMUST00000103241
RefSeq Acc Id: ENSMUSP00000099530   ⟸   ENSMUST00000103240
RefSeq Acc Id: ENSMUSP00000099529   ⟸   ENSMUST00000103239
RefSeq Acc Id: ENSMUSP00000099528   ⟸   ENSMUST00000103238
RefSeq Acc Id: ENSMUSP00000077014   ⟸   ENSMUST00000077847
RefSeq Acc Id: XP_036016208   ⟸   XM_036160315
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036016222   ⟸   XM_036160329
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036016183   ⟸   XM_036160290
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016218   ⟸   XM_036160325
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036016196   ⟸   XM_036160303
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036016203   ⟸   XM_036160310
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016184   ⟸   XM_036160291
- Peptide Label: isoform X3
- UniProtKB: Q76KF4 (UniProtKB/Swiss-Prot),   Q76KF3 (UniProtKB/Swiss-Prot),   Q76KF2 (UniProtKB/Swiss-Prot),   Q76KF1 (UniProtKB/Swiss-Prot),   Q76KF0 (UniProtKB/Swiss-Prot),   A2AW72 (UniProtKB/Swiss-Prot),   Q80TD0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036016191   ⟸   XM_036160298
- Peptide Label: isoform X4
- UniProtKB: A2AW73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016219   ⟸   XM_036160326
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036016229   ⟸   XM_036160336
- Peptide Label: isoform X18
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016228   ⟸   XM_036160335
- Peptide Label: isoform X17
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016224   ⟸   XM_036160331
- Peptide Label: isoform X13
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016225   ⟸   XM_036160332
- Peptide Label: isoform X14
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016226   ⟸   XM_036160333
- Peptide Label: isoform X15
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016227   ⟸   XM_036160334
- Peptide Label: isoform X16
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016230   ⟸   XM_036160337
- Peptide Label: isoform X19
- UniProtKB: Q8BKG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016176   ⟸   XM_036160283
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016181   ⟸   XM_036160288
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016178   ⟸   XM_036160285
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001394214   ⟸   NM_001407285
- Peptide Label: isoform 7 precursor
Protein Domains
PSI   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q76KF0-F1-model_v2 AlphaFold Q76KF0 1-1073 view protein structure

Promoters
RGD ID:6878546
Promoter ID:EPDNEW_M2724
Type:initiation region
Name:Sema6d_2
Description:Mus musculus sema domain, transmembrane domain , and cytoplasmicdomain, 6D , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2726  EPDNEW_M2727  EPDNEW_M2728  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382124,089,982 - 124,090,042EPDNEW
RGD ID:6878550
Promoter ID:EPDNEW_M2726
Type:single initiation site
Name:Sema6d_3
Description:Mus musculus sema domain, transmembrane domain , and cytoplasmicdomain, 6D , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2724  EPDNEW_M2727  EPDNEW_M2728  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382124,373,568 - 124,373,628EPDNEW
RGD ID:6832671
Promoter ID:MM_KWN:31500
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung
Transcripts:NM_199239,   NM_199240,   OTTMUST00000036147,   OTTMUST00000036150,   UC008MBN.1,   UC008MBO.1,   UC008MBP.1,   UC008MBQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362124,435,511 - 124,436,397 (+)MPROMDB
RGD ID:6832672
Promoter ID:MM_KWN:31501
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC008MBR.1,   UC008MBS.1,   UC008MBT.1,   UC008MBU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362124,478,536 - 124,479,036 (+)MPROMDB
RGD ID:6847694
Promoter ID:MM_ACW:29606
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:SEMA6D.MSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362124,489,836 - 124,490,336 (+)MPROMDB
RGD ID:6878552
Promoter ID:EPDNEW_M2727
Type:initiation region
Name:Sema6d_4
Description:Mus musculus sema domain, transmembrane domain , and cytoplasmicdomain, 6D , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2724  EPDNEW_M2726  EPDNEW_M2728  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382124,610,094 - 124,610,154EPDNEW
RGD ID:6878554
Promoter ID:EPDNEW_M2728
Type:single initiation site
Name:Sema6d_1
Description:Mus musculus sema domain, transmembrane domain , and cytoplasmicdomain, 6D , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2724  EPDNEW_M2726  EPDNEW_M2727  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382124,610,281 - 124,610,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387661 AgrOrtholog
Ensembl Genes ENSMUSG00000027200 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051419 ENTREZGENE
  ENSMUST00000051419.15 UniProtKB/Swiss-Prot
  ENSMUST00000076335 ENTREZGENE
  ENSMUST00000076335.12 UniProtKB/Swiss-Prot
  ENSMUST00000077847 ENTREZGENE
  ENSMUST00000077847.12 UniProtKB/Swiss-Prot
  ENSMUST00000078621 ENTREZGENE
  ENSMUST00000078621.12 UniProtKB/Swiss-Prot
  ENSMUST00000103238 ENTREZGENE
  ENSMUST00000103238.2 UniProtKB/Swiss-Prot
  ENSMUST00000103239 ENTREZGENE
  ENSMUST00000103239.10 UniProtKB/Swiss-Prot
  ENSMUST00000103240 ENTREZGENE
  ENSMUST00000103240.9 UniProtKB/TrEMBL
  ENSMUST00000103241 ENTREZGENE
  ENSMUST00000103241.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Plexin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:214968 UniProtKB/Swiss-Prot
MGD MGI:2387661 ENTREZGENE
NCBI Gene 214968 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEMAPHORIN-6D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema6d PhenoGen
PROSITE SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AW72 ENTREZGENE
  A2AW73 ENTREZGENE, UniProtKB/TrEMBL
  Q76KF0 ENTREZGENE
  Q76KF1 ENTREZGENE
  Q76KF2 ENTREZGENE
  Q76KF3 ENTREZGENE
  Q76KF4 ENTREZGENE
  Q80TD0 ENTREZGENE
  Q8BKG8 ENTREZGENE, UniProtKB/TrEMBL
  SEM6D_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AW72 UniProtKB/Swiss-Prot
  Q76KF1 UniProtKB/Swiss-Prot
  Q76KF2 UniProtKB/Swiss-Prot
  Q76KF3 UniProtKB/Swiss-Prot
  Q76KF4 UniProtKB/Swiss-Prot
  Q80TD0 UniProtKB/Swiss-Prot