Cttnbp2nl (CTTNBP2 N-terminal like) - Rat Genome Database

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Gene: Cttnbp2nl (CTTNBP2 N-terminal like) Mus musculus
Analyze
Symbol: Cttnbp2nl
Name: CTTNBP2 N-terminal like
RGD ID: 1321945
MGI Page MGI
Description: Predicted to enable protein phosphatase 2A binding activity. Predicted to act upstream of or within negative regulation of transmembrane transport. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in actin cytoskeleton. Is expressed in several structures, including alimentary system; axial musculature; orbito-sphenoid; submandibular gland primordium; and urinary system. Orthologous to human CTTNBP2NL (CTTNBP2 N-terminal like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA552995; AA589392; AU018624; BC003236; CTTNBP2 N-terminal-like protein; MGC7720; mKIAA1433
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,909,231 - 104,960,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,909,231 - 104,960,462 (-)EnsemblGRCm39 Ensembl
GRCm383105,001,915 - 105,053,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,001,915 - 105,053,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,804,833 - 104,856,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363105,131,801 - 105,181,202 (-)NCBIMGSCv36mm8
Celera3107,199,733 - 107,250,872 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
amitrole  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
ketamine  (ISO)
metformin  (EXP)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodimethylamine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
Soman  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
sunitinib  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295  
PMID:15345747   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:24218568   PMID:29459677  


Genomics

Comparative Map Data
Cttnbp2nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,909,231 - 104,960,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,909,231 - 104,960,462 (-)EnsemblGRCm39 Ensembl
GRCm383105,001,915 - 105,053,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,001,915 - 105,053,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,804,833 - 104,856,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363105,131,801 - 105,181,202 (-)NCBIMGSCv36mm8
Celera3107,199,733 - 107,250,872 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.88NCBI
CTTNBP2NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,391,087 - 112,461,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,396,214 - 112,463,456 (+)EnsemblGRCh38hg38GRCh38
GRCh371112,938,836 - 113,003,786 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361112,740,383 - 112,803,739 (+)NCBINCBI36Build 36hg18NCBI36
Celera1111,169,369 - 111,234,318 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1110,795,912 - 110,861,154 (+)NCBIHuRef
CHM1_11113,053,632 - 113,118,610 (+)NCBICHM1_1
T2T-CHM13v2.01112,403,339 - 112,473,705 (+)NCBIT2T-CHM13v2.0
Cttnbp2nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82195,196,318 - 195,244,792 (-)NCBIGRCr8
mRatBN7.22192,507,963 - 192,554,548 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2192,507,963 - 192,541,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2200,101,956 - 200,148,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,974,589 - 198,021,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,791,536 - 192,838,115 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02207,495,056 - 207,541,808 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,495,055 - 207,541,645 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,917,956 - 226,964,542 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42200,272,402 - 200,319,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12200,235,155 - 200,282,193 (-)NCBI
Celera2184,973,748 - 185,020,236 (-)NCBICelera
Cytogenetic Map2q34NCBI
Cttnbp2nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543515,857,948 - 15,910,486 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543515,858,056 - 15,910,486 (+)NCBIChiLan1.0ChiLan1.0
CTTNBP2NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,574,923 - 114,640,338 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,723,050 - 113,788,449 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,049,389 - 115,114,146 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11125,233,780 - 125,301,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1125,236,986 - 125,300,860 (-)Ensemblpanpan1.1panPan2
CTTNBP2NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11763,078,111 - 63,132,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1763,079,732 - 63,118,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,591,512 - 62,646,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01764,252,356 - 64,306,962 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1764,252,356 - 64,306,001 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,986,214 - 63,040,734 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01763,044,585 - 63,099,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,852,322 - 63,893,840 (-)NCBIUU_Cfam_GSD_1.0
Cttnbp2nl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,442,784 - 16,495,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936690982,402 - 1,035,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936690982,414 - 1,034,947 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTTNBP2NL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,959,571 - 108,011,611 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,957,420 - 108,012,764 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24118,026,554 - 118,082,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTTNBP2NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12021,181,241 - 21,248,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2021,180,925 - 21,247,981 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603837,233,367 - 37,300,128 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cttnbp2nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,216,556 - 8,254,626 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,201,321 - 8,254,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cttnbp2nl
1521 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1903
Count of miRNA genes:542
Interacting mature miRNAs:672
Transcripts:ENSMUST00000077548, ENSMUST00000098763
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse

Markers in Region
RH136223  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383105,002,229 - 105,002,442UniSTSGRCm38
MGSCv373104,805,147 - 104,805,360UniSTSGRCm37
Celera3107,200,047 - 107,200,260UniSTS
Cytogenetic Map3F2.2UniSTS
AU018624  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383105,002,069 - 105,002,356UniSTSGRCm38
MGSCv373104,804,987 - 104,805,274UniSTSGRCm37
Celera3107,199,887 - 107,200,174UniSTS
Cytogenetic Map3F2.2UniSTS
Whitehead/MRC_RH31229.09UniSTS
RH124514  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383105,005,775 - 105,005,909UniSTSGRCm38
MGSCv373104,808,693 - 104,808,827UniSTSGRCm37
Celera3107,203,593 - 107,203,727UniSTS
Cytogenetic Map3F2.2UniSTS
RH124948  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383105,002,480 - 105,002,633UniSTSGRCm38
MGSCv373104,805,398 - 104,805,551UniSTSGRCm37
Celera3107,200,298 - 107,200,451UniSTS
Cytogenetic Map3F2.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY195820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV562515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF410090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000077548   ⟹   ENSMUSP00000076751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,909,231 - 104,960,462 (-)Ensembl
GRCm38.p6 Ensembl3105,001,915 - 105,053,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098763   ⟹   ENSMUSP00000096359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,909,233 - 104,960,267 (-)Ensembl
GRCm38.p6 Ensembl3105,001,917 - 105,052,951 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197437   ⟹   ENSMUSP00000143282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,913,381 - 104,960,270 (-)Ensembl
GRCm38.p6 Ensembl3105,006,065 - 105,052,954 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3104,913,411 - 104,960,241 (-)Ensembl
GRCm38.p6 Ensembl3105,006,095 - 105,052,925 (-)Ensembl
RefSeq Acc Id: NM_001163332   ⟹   NP_001156804
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
GRCm383105,001,915 - 105,052,953 (-)NCBI
MGSCv373104,804,833 - 104,856,064 (-)RGD
Celera3107,199,733 - 107,250,872 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163333   ⟹   NP_001156805
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
GRCm383105,001,915 - 105,052,953 (-)NCBI
MGSCv373104,804,833 - 104,856,064 (-)RGD
Celera3107,199,733 - 107,250,872 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001411186   ⟹   NP_001398115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,462 (-)NCBI
RefSeq Acc Id: NM_001411188   ⟹   NP_001398117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,462 (-)NCBI
RefSeq Acc Id: NM_001411189   ⟹   NP_001398118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
RefSeq Acc Id: NM_001411190   ⟹   NP_001398119
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
RefSeq Acc Id: NM_001411191   ⟹   NP_001398120
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
RefSeq Acc Id: NM_001411192   ⟹   NP_001398121
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
RefSeq Acc Id: NM_001411193   ⟹   NP_001398122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,240 (-)NCBI
RefSeq Acc Id: NM_030249   ⟹   NP_084525
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393104,909,231 - 104,960,462 (-)NCBI
GRCm383105,001,915 - 105,053,146 (-)ENTREZGENE
MGSCv373104,804,833 - 104,856,064 (-)RGD
Celera3107,199,733 - 107,250,872 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_084525   ⟸   NM_030249
- UniProtKB: Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot),   Q99LJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156804   ⟸   NM_001163332
- UniProtKB: Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot),   Q99LJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156805   ⟸   NM_001163333
- UniProtKB: Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot),   Q99LJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143282   ⟸   ENSMUST00000197437
RefSeq Acc Id: ENSMUSP00000096359   ⟸   ENSMUST00000098763
RefSeq Acc Id: ENSMUSP00000076751   ⟸   ENSMUST00000077548
RefSeq Acc Id: NP_001398117   ⟸   NM_001411188
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398115   ⟸   NM_001411186
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398122   ⟸   NM_001411193
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398120   ⟸   NM_001411191
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398121   ⟸   NM_001411192
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398119   ⟸   NM_001411190
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398118   ⟸   NM_001411189
- UniProtKB: Q99LJ0 (UniProtKB/Swiss-Prot),   Q8BSV1 (UniProtKB/Swiss-Prot),   Q6ZPR0 (UniProtKB/Swiss-Prot),   Q922L8 (UniProtKB/Swiss-Prot)
Protein Domains
Cortactin-binding protein-2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99LJ0-F1-model_v2 AlphaFold Q99LJ0 1-638 view protein structure

Promoters
RGD ID:6833613
Promoter ID:MM_KWN:35644
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001163332,   NM_001163333,   NM_030249,   UC008QUU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363104,855,751 - 104,856,427 (-)MPROMDB
RGD ID:6881924
Promoter ID:EPDNEW_M4413
Type:initiation region
Name:Cttnbp2nl_1
Description:Mus musculus CTTNBP2 N-terminal like , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4414  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383105,052,924 - 105,052,984EPDNEW
RGD ID:6881978
Promoter ID:EPDNEW_M4414
Type:multiple initiation site
Name:Cttnbp2nl_2
Description:Mus musculus CTTNBP2 N-terminal like , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4413  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383105,053,146 - 105,053,206EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933137 AgrOrtholog
Ensembl Genes ENSMUSG00000062127 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077548 ENTREZGENE
  ENSMUST00000077548.12 UniProtKB/Swiss-Prot
  ENSMUST00000098763 ENTREZGENE
  ENSMUST00000098763.7 UniProtKB/Swiss-Prot
  ENSMUST00000197437.5 UniProtKB/TrEMBL
InterPro Cortactin-binding_p2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:80281 UniProtKB/Swiss-Prot
MGD MGI:1933137 ENTREZGENE
NCBI Gene 80281 ENTREZGENE
PANTHER CTTNBP2 N-TERMINAL-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cttnbp2nl PhenoGen
UniProt A0A0G2JFS0_MOUSE UniProtKB/TrEMBL
  CT2NL_MOUSE UniProtKB/Swiss-Prot
  Q6ZPR0 ENTREZGENE
  Q8BSV1 ENTREZGENE
  Q922L8 ENTREZGENE
  Q99LJ0 ENTREZGENE
UniProt Secondary Q6ZPR0 UniProtKB/Swiss-Prot
  Q8BSV1 UniProtKB/Swiss-Prot
  Q922L8 UniProtKB/Swiss-Prot