Fanci (Fanconi anemia, complementation group I) - Rat Genome Database

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Gene: Fanci (Fanconi anemia, complementation group I) Mus musculus
Analyze
Symbol: Fanci
Name: Fanconi anemia, complementation group I
RGD ID: 1321934
MGI Page MGI
Description: Predicted to have DNA polymerase binding activity. Predicted to be involved in positive regulation of protein ubiquitination. Predicted to localize to Fanconi anaemia nuclear complex; cytosol; and nucleoplasm. Human ortholog(s) of this gene implicated in Fanconi anemia and Fanconi anemia complementation group I. Orthologous to human FANCI (FA complementation group I); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Fanconi anemia group I protein homolog; MGC38195; MGC38407
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,042,056 - 79,100,013 (+)NCBIGRCm39mm39
GRCm39 Ensembl779,041,677 - 79,100,012 (+)Ensembl
GRCm38779,392,312 - 79,450,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,391,929 - 79,450,264 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,537,224 - 86,595,150 (+)NCBIGRCm37mm9NCBIm37
MGSCv36779,265,866 - 79,323,777 (+)NCBImm8
Celera776,790,497 - 76,852,630 (+)NCBICelera
Cytogenetic Map7D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
amphetamine  (ISO)
asbestos  (ISO)
avobenzone  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
digitoxin  (ISO)
digoxin  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
fragrance  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lucanthone  (ISO)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
N-Nitrosopyrrolidine  (ISO)
ouabain  (ISO)
ozone  (EXP)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctanoic acid  (EXP)
phenethyl isothiocyanate  (ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14691545   PMID:16141072   PMID:16141073  
PMID:17015433   PMID:17967808   PMID:18799693   PMID:18931676   PMID:21677750   PMID:21764741   PMID:21873635   PMID:26625197   PMID:26658019   PMID:27073218   PMID:28378742   PMID:31219578  
PMID:32325033  


Genomics

Comparative Map Data
Fanci
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,042,056 - 79,100,013 (+)NCBIGRCm39mm39
GRCm39 Ensembl779,041,677 - 79,100,012 (+)Ensembl
GRCm38779,392,312 - 79,450,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,391,929 - 79,450,264 (+)EnsemblGRCm38mm10GRCm38
MGSCv37786,537,224 - 86,595,150 (+)NCBIGRCm37mm9NCBIm37
MGSCv36779,265,866 - 79,323,777 (+)NCBImm8
Celera776,790,497 - 76,852,630 (+)NCBICelera
Cytogenetic Map7D2NCBI
FANCI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1589,243,945 - 89,317,261 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1589,243,949 - 89,317,261 (+)EnsemblGRCh38hg38GRCh38
GRCh381589,243,973 - 89,317,259 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371589,787,210 - 89,860,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,588,198 - 87,661,366 (+)NCBINCBI36hg18NCBI36
Celera1566,188,469 - 66,261,721 (+)NCBI
Cytogenetic Map15q26.1NCBI
HuRef1565,899,078 - 65,972,245 (+)NCBIHuRef
CHM1_11589,628,176 - 89,701,402 (+)NCBICHM1_1
Fanci
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21133,327,264 - 133,383,661 (+)NCBI
Rnor_6.0 Ensembl1141,120,166 - 141,172,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01141,116,565 - 141,172,997 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01142,078,658 - 142,134,772 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,144,029 - 135,196,828 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1125,390,494 - 125,446,830 (+)NCBICelera
Cytogenetic Map1q31NCBI
Fanci
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,788,922 - 15,853,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,788,812 - 15,857,933 (-)NCBIChiLan1.0ChiLan1.0
FANCI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11587,142,871 - 87,215,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,142,871 - 87,215,271 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01567,935,882 - 68,009,033 (+)NCBIMhudiblu_PPA_v0panPan3
FANCI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,282,955 - 52,357,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,282,731 - 52,357,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,917,864 - 54,992,648 (+)NCBI
ROS_Cfam_1.0352,700,699 - 52,774,876 (+)NCBI
UMICH_Zoey_3.1352,223,438 - 52,297,602 (+)NCBI
UNSW_CanFamBas_1.0352,433,730 - 52,507,862 (+)NCBI
UU_Cfam_GSD_1.0352,772,736 - 52,847,574 (+)NCBI
Fanci
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640131,154,626 - 131,236,280 (-)NCBI
SpeTri2.0NW_00493648315,096,215 - 15,179,856 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl754,744,742 - 54,890,997 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1754,811,024 - 54,889,992 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2759,782,093 - 59,865,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCI
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1297,788,983 - 7,864,505 (+)NCBI
ChlSab1.1 Ensembl297,790,458 - 7,855,552 (+)Ensembl
Fanci
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476816,427,060 - 16,493,850 (+)NCBI

Position Markers
RH125851  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38779,449,583 - 79,449,832UniSTSGRCm38
MGSCv37786,594,469 - 86,594,718UniSTSGRCm37
Celera776,851,949 - 76,852,198UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map7EUniSTS
Whitehead/MRC_RH7778.28UniSTS
D7Jpk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38779,433,189 - 79,433,329UniSTSGRCm38
MGSCv37786,578,075 - 86,578,215UniSTSGRCm37
Celera776,835,557 - 76,835,697UniSTS
Cytogenetic Map7D3UniSTS
cM Map737.0UniSTS
MARC_7859-7860:996688105:3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38779,449,991 - 79,450,632UniSTSGRCm38
MGSCv37786,594,877 - 86,595,518UniSTSGRCm37
Celera776,852,357 - 76,852,998UniSTS
Cytogenetic Map7EUniSTS
Cytogenetic Map7D3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74560000079600000Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74873471382734859Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74950947983586207Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74954353083543642Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75147520685475345Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75147520685475345Mouse
13208555Lgth10_mbody length 10 (mouse)752000000126000000Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75250000086500000Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753600000143600000Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)755169841117223580Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75623976087493512Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)757300000134400000Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75767637391676604Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75767637391676604Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75767637391676604Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)762100000121800000Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)762100000124100000Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)762200000103100000Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76448567698485905Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76560000097300000Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765600000126900000Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)766139778100139778Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)766139778100139778Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76680000098700000Mouse
12801463Rta1_mretinal aging 1 (mouse)76751827989440781Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767640886101641032Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767640886101641032Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767640886101641032Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)768200000105800000Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)768200000119900000Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)768200000124600000Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)768200000125400000Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768716387102716494Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)770300000120900000Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770493929104494171Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772614164106614164Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7320735792932955Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773400000126100000Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773500000143600000Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)774076757108076757Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7467637392745138Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)775200000122600000Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)775200000122600000Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775745007109745138Mouse
14746989Manh62_mmandible shape 62 (mouse)776093321110093321Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)779000000137300000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1879
Count of miRNA genes:711
Interacting mature miRNAs:910
Transcripts:ENSMUST00000036865, ENSMUST00000117227, ENSMUST00000118959, ENSMUST00000126456, ENSMUST00000132091, ENSMUST00000137667
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF021012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX519311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY754860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN458387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN702700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO426844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV655910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036865   ⟹   ENSMUSP00000044931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,392,312 - 79,450,264 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118959   ⟹   ENSMUSP00000114122
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,392,308 - 79,409,582 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126456   ⟹   ENSMUSP00000114513
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,391,929 - 79,401,886 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132091   ⟹   ENSMUSP00000122113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,392,353 - 79,450,264 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137667   ⟹   ENSMUSP00000117992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,399,136 - 79,435,691 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205817   ⟹   ENSMUSP00000146293
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,412,736 - 79,427,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206121   ⟹   ENSMUSP00000146237
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl779,440,668 - 79,445,726 (+)Ensembl
RefSeq Acc Id: NM_145946   ⟹   NP_666058
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,042,086 - 79,100,012 (+)NCBI
GRCm38779,392,338 - 79,450,264 (+)NCBI
MGSCv37786,537,224 - 86,595,150 (+)RGD
Celera776,790,497 - 76,852,630 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540738   ⟹   XP_006540801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,042,056 - 79,100,013 (+)NCBI
GRCm38779,392,312 - 79,450,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250833   ⟹   XP_011249135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,042,056 - 79,089,345 (+)NCBI
GRCm38779,392,312 - 79,439,596 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017322082   ⟹   XP_017177571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,045,683 - 79,100,013 (+)NCBI
GRCm38779,395,933 - 79,450,266 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152857   ⟹   XP_036008750
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,042,071 - 79,100,013 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_666058   ⟸   NM_145946
- UniProtKB: Q8K368 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006540801   ⟸   XM_006540738
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249135   ⟸   XM_011250833
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017177571   ⟸   XM_017322082
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000114122   ⟸   ENSMUST00000118959
RefSeq Acc Id: ENSMUSP00000146237   ⟸   ENSMUST00000206121
RefSeq Acc Id: ENSMUSP00000146293   ⟸   ENSMUST00000205817
RefSeq Acc Id: ENSMUSP00000122113   ⟸   ENSMUST00000132091
RefSeq Acc Id: ENSMUSP00000114513   ⟸   ENSMUST00000126456
RefSeq Acc Id: ENSMUSP00000044931   ⟸   ENSMUST00000036865
RefSeq Acc Id: ENSMUSP00000117992   ⟸   ENSMUST00000137667
RefSeq Acc Id: XP_036008750   ⟸   XM_036152857
- Peptide Label: isoform X2
Protein Domains
FANCI_HD1   FANCI_HD2   FANCI_S1   FANCI_S1-cap   FANCI_S2   FANCI_S3

Promoters
RGD ID:8664501
Promoter ID:EPDNEW_M10282
Type:multiple initiation site
Name:Fanci_1
Description:Mus musculus Fanconi anemia, complementation group I , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38779,392,327 - 79,392,387EPDNEW
RGD ID:6841086
Promoter ID:MM_KWN:51226
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000036896,   ENSMUST00000117227,   ENSMUST00000118959,   NM_145946,   OTTMUST00000072118,   OTTMUST00000072119
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36786,536,834 - 86,537,334 (+)MPROMDB
RGD ID:6841085
Promoter ID:MM_KWN:51227
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000072117
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36786,543,636 - 86,544,136 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384790 AgrOrtholog
Ensembl Genes ENSMUSG00000039187 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044931 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114122 UniProtKB/TrEMBL
  ENSMUSP00000114513 UniProtKB/TrEMBL
  ENSMUSP00000117992 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000122113 UniProtKB/Swiss-Prot
  ENSMUSP00000146237 UniProtKB/TrEMBL
  ENSMUSP00000146293 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000118959 UniProtKB/TrEMBL
  ENSMUST00000126456 UniProtKB/TrEMBL
  ENSMUST00000132091 UniProtKB/Swiss-Prot
  ENSMUST00000137667 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000205817 UniProtKB/TrEMBL
  ENSMUST00000206121 UniProtKB/TrEMBL
InterPro FANCI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_HD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_HD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S1-cap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S4 UniProtKB/Swiss-Prot
KEGG Report mmu:208836 UniProtKB/Swiss-Prot
MGD MGI:2384790 ENTREZGENE
NCBI Gene 208836 ENTREZGENE
PANTHER PTHR21818 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FANCI_HD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_HD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S1-cap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FANCI_S4 UniProtKB/Swiss-Prot
PhenoGen Fanci PhenoGen
UniProt A0A0U1RQ41_MOUSE UniProtKB/TrEMBL
  A0A0U1RQ89_MOUSE UniProtKB/TrEMBL
  D3YVC7_MOUSE UniProtKB/TrEMBL
  F2Z414_MOUSE UniProtKB/TrEMBL
  F7ALG5_MOUSE UniProtKB/TrEMBL
  FANCI_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8BUE9 UniProtKB/Swiss-Prot
  Q8R3G8 UniProtKB/Swiss-Prot