Pex13 (peroxisomal biogenesis factor 13) - Rat Genome Database

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Gene: Pex13 (peroxisomal biogenesis factor 13) Mus musculus
Analyze
Symbol: Pex13
Name: peroxisomal biogenesis factor 13
RGD ID: 1321727
MGI Page MGI
Description: Predicted to enable protein transmembrane transporter activity. Acts upstream of or within several processes, including fatty acid alpha-oxidation; microtubule-based peroxisome localization; and nervous system development. Located in peroxisomal membrane. Is expressed in brain and liver. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 11A. Orthologous to human PEX13 (peroxisomal biogenesis factor 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610008O20Rik; peroxin-13; peroxisomal membrane protein PEX13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Pex13-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,597,283 - 23,615,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,596,479 - 23,615,959 (-)EnsemblGRCm39 Ensembl
GRCm381123,646,843 - 23,665,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,646,479 - 23,665,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,546,479 - 23,565,935 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,546,479 - 23,565,935 (-)NCBIMGSCv36mm8
Celera1125,768,364 - 25,787,821 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adrenocortical cell morphology  (IAGP)
abnormal cerebellar granule cell migration  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum fissure morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal fatty acids level  (IAGP)
abnormal mitochondrial crista morphology  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal peroxisome morphology  (IAGP)
abnormal peroxisome physiology  (IAGP)
abnormal podocyte foot process morphology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell differentiation  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal reflex  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
aphagia  (IAGP)
astrocytosis  (IAGP)
bradykinesia  (IAGP)
decreased body weight  (IAGP)
decreased brain plasmalogen level  (IAGP)
gliosis  (IAGP)
hypotonia  (IAGP)
impaired coordination  (IAGP)
increased plasmalogen level  (IAGP)
kyphosis  (IAGP)
limb grasping  (IAGP)
macrovesicular hepatic steatosis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neuron degeneration  (IAGP)
oxidative stress  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
reduced cerebellar foliation  (IAGP)
respiratory distress  (IAGP)
thin cerebellar molecular layer  (IAGP)
thin cerebral cortex  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11829486   PMID:11857814   PMID:12174196   PMID:12477932   PMID:12897163   PMID:14561759   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16449325   PMID:16602821   PMID:16919269   PMID:17881773   PMID:17967808   PMID:18799693   PMID:19830841   PMID:20959636   PMID:21460186  
PMID:21677750   PMID:21873635   PMID:22967998   PMID:24881576   PMID:25982384   PMID:27514574   PMID:27827795   PMID:29187321   PMID:31146259   PMID:31267012   PMID:32554809   PMID:32565019  
PMID:34517131  


Genomics

Comparative Map Data
Pex13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,597,283 - 23,615,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,596,479 - 23,615,959 (-)EnsemblGRCm39 Ensembl
GRCm381123,646,843 - 23,665,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,646,479 - 23,665,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,546,479 - 23,565,935 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,546,479 - 23,565,935 (-)NCBIMGSCv36mm8
Celera1125,768,364 - 25,787,821 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.34NCBI
PEX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,017,720 - 61,051,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,017,225 - 61,051,990 (+)EnsemblGRCh38hg38GRCh38
GRCh37261,244,855 - 61,279,125 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,098,374 - 61,129,896 (+)NCBINCBI36Build 36hg18NCBI36
Build 34261,156,520 - 61,188,042NCBI
Celera261,088,403 - 61,122,717 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef260,985,309 - 61,019,608 (+)NCBIHuRef
CHM1_1261,175,398 - 61,209,708 (+)NCBICHM1_1
T2T-CHM13v2.0261,023,561 - 61,057,833 (+)NCBIT2T-CHM13v2.0
Pex13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,804,673 - 101,822,367 (-)NCBIGRCr8
mRatBN7.21497,602,829 - 97,621,233 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,603,539 - 97,621,262 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,936,310 - 101,954,154 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,180,657 - 103,198,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,652,232 - 99,670,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,394,299 - 108,411,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,394,303 - 108,412,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,229,224 - 105,246,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,550,699 - 104,571,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,573,004 - 104,590,753 (-)NCBI
Celera1496,579,668 - 96,597,394 (-)NCBICelera
Cytogenetic Map14q22NCBI
Pex13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,799,568 - 22,830,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,799,568 - 22,830,718 (-)NCBIChiLan1.0ChiLan1.0
PEX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,325,084 - 65,359,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,329,035 - 65,363,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,108,970 - 61,143,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,250,887 - 62,285,163 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,250,887 - 62,285,151 (+)Ensemblpanpan1.1panPan2
PEX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,113,213 - 61,130,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,123,655 - 61,193,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,993,422 - 61,021,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,112,178 - 62,140,036 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,112,186 - 62,139,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,815,043 - 61,842,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,099,662 - 62,127,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,395,168 - 62,422,982 (+)NCBIUU_Cfam_GSD_1.0
Pex13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,011,973 - 22,040,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,529,779 - 6,562,590 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,530,385 - 6,559,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,753,908 - 80,791,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,757,470 - 80,791,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,852,155 - 84,883,629 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,939,181 - 45,973,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,938,940 - 45,973,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,823,893 - 65,860,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833913,337 - 940,611 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833914,621 - 940,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pex13
574 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1182
Count of miRNA genes:621
Interacting mature miRNAs:772
Transcripts:ENSMUST00000020523, ENSMUST00000124839, ENSMUST00000130811, ENSMUST00000146533
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
PMC166343P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,657,132 - 23,657,621UniSTSGRCm38
MGSCv371123,557,132 - 23,557,621UniSTSGRCm37
Celera1125,779,018 - 25,779,507UniSTS
Cytogenetic Map11A3.3UniSTS
PMC166343P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,657,132 - 23,657,620UniSTSGRCm38
MGSCv371123,557,132 - 23,557,620UniSTSGRCm37
Celera1125,779,018 - 25,779,506UniSTS
Cytogenetic Map11A3.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_023651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_157299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF329877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ304506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB856772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF016908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000020523   ⟹   ENSMUSP00000020523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,596,479 - 23,615,959 (-)Ensembl
GRCm38.p6 Ensembl1123,646,479 - 23,665,959 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,605,833 - 23,615,842 (-)Ensembl
GRCm38.p6 Ensembl1123,655,833 - 23,665,842 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130811   ⟹   ENSMUSP00000115020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,599,456 - 23,615,852 (-)Ensembl
GRCm38.p6 Ensembl1123,649,456 - 23,665,852 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,606,086 - 23,615,673 (-)Ensembl
GRCm38.p6 Ensembl1123,656,086 - 23,665,673 (-)Ensembl
RefSeq Acc Id: NM_023651   ⟹   NP_076140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,597,283 - 23,615,883 (-)NCBI
GRCm381123,647,283 - 23,665,883 (-)NCBI
MGSCv371123,546,479 - 23,565,935 (-)RGD
Celera1125,768,364 - 25,787,821 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_157299
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,597,283 - 23,615,883 (-)NCBI
GRCm381123,647,283 - 23,665,883 (-)NCBI
Sequence:
RefSeq Acc Id: NP_076140   ⟸   NM_023651
- UniProtKB: Q99MM2 (UniProtKB/Swiss-Prot),   Q8CCW5 (UniProtKB/Swiss-Prot),   Q8CCJ5 (UniProtKB/Swiss-Prot),   Q3U5T1 (UniProtKB/Swiss-Prot),   Q9EPK1 (UniProtKB/Swiss-Prot),   Q9D0K1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000115020   ⟸   ENSMUST00000130811
Ensembl Acc Id: ENSMUSP00000020523   ⟸   ENSMUST00000020523
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D0K1-F1-model_v2 AlphaFold Q9D0K1 1-405 view protein structure

Promoters
RGD ID:6821530
Promoter ID:MM_KWN:6689
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B4
Transcripts:ENSMUST00000109530,   OTTMUST00000011762,   OTTMUST00000011763,   OTTMUST00000011764
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361123,565,664 - 23,566,164 (-)MPROMDB
RGD ID:8674122
Promoter ID:EPDNEW_M15092
Type:initiation region
Name:Pex13_1
Description:Mus musculus peroxisomal biogenesis factor 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381123,665,883 - 23,665,943EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919379 AgrOrtholog
Ensembl Genes ENSMUSG00000020283 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020523 ENTREZGENE
  ENSMUST00000020523.4 UniProtKB/Swiss-Prot
  ENSMUST00000130811.2 UniProtKB/TrEMBL
Gene3D-CATH SH3 Domains UniProtKB/Swiss-Prot
InterPro Peroxin-13_N UniProtKB/Swiss-Prot
  Pex13 UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:72129 UniProtKB/Swiss-Prot
MGD MGI:1919379 ENTREZGENE
NCBI Gene 72129 ENTREZGENE
PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX13 UniProtKB/Swiss-Prot
  PTHR19332 UniProtKB/Swiss-Prot
Pfam Peroxin-13_N UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
PhenoGen Pex13 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot
PROSITE SH3 UniProtKB/Swiss-Prot
SMART SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot
UniProt D6RH41_MOUSE UniProtKB/TrEMBL
  PEX13_MOUSE UniProtKB/Swiss-Prot
  Q3U5T1 ENTREZGENE
  Q8CCJ5 ENTREZGENE
  Q8CCW5 ENTREZGENE
  Q99MM2 ENTREZGENE
  Q9D0K1 ENTREZGENE
  Q9EPK1 ENTREZGENE
UniProt Secondary Q3U5T1 UniProtKB/Swiss-Prot
  Q8CCJ5 UniProtKB/Swiss-Prot
  Q8CCW5 UniProtKB/Swiss-Prot
  Q99MM2 UniProtKB/Swiss-Prot
  Q9EPK1 UniProtKB/Swiss-Prot