Ccna1 (cyclin A1) - Rat Genome Database

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Gene: Ccna1 (cyclin A1) Mus musculus
Analyze
Symbol: Ccna1
Name: cyclin A1
RGD ID: 1321662
MGI Page MGI
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within several processes, including cell division; meiotic cell cycle; and spermatogenesis. Part of cyclin A1-CDK2 complex. Is expressed in several structures, including blastocyst; liver; testis; and tooth. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CCNA1 (cyclin A1); PARTICIPATES IN G1/S transition pathway; acute myeloid leukemia pathway; cell cycle pathway, mitotic; INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: cyclin-A1; MGC159139
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,952,890 - 54,965,055 (-)NCBIGRCm39mm39
GRCm39 Ensembl354,952,890 - 54,962,922 (-)Ensembl
GRCm38355,045,469 - 55,057,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,045,469 - 55,055,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv37354,849,391 - 54,858,977 (-)NCBIGRCm37mm9NCBIm37
MGSCv36355,133,404 - 55,142,984 (-)NCBImm8
Celera354,763,020 - 54,772,599 (-)NCBICelera
Cytogenetic Map3CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-taxifolin  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
atropine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylparaben  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP,ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
diethyl maleate  (ISO)
dimethylarsinous acid  (ISO)
dinophysistoxin 2  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
flavanones  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
harmine  (ISO)
heptanal  (ISO)
hexanal  (ISO)
homocysteine  (ISO)
hydrogen chloride  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
L-ascorbic acid  (ISO)
lead(II) chloride  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (EXP)
lithium atom  (ISO)
lithium chloride  (ISO)
lithium hydride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel atom  (ISO)
nonanal  (ISO)
octanal  (ISO)
okadaic acid  (ISO)
ouabain  (ISO)
paracetamol  (EXP)
parathion  (ISO)
PCB138  (EXP)
pentanal  (ISO)
pioglitazone  (EXP)
poly(propylene imine) macromolecule  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
propylparaben  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
Triptolide  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XL147  (EXP)
zearalenone  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7739547   PMID:8552401   PMID:8565853   PMID:9074935   PMID:9110315   PMID:10068472   PMID:10082561   PMID:10086336   PMID:10349636   PMID:10436023   PMID:10508527   PMID:10737962  
PMID:10926775   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11381140   PMID:11463388   PMID:11545166   PMID:11566717   PMID:11585773   PMID:11980909   PMID:12121977   PMID:12466851  
PMID:12477932   PMID:12819135   PMID:12941628   PMID:14736746   PMID:14966563   PMID:15047941   PMID:15123840   PMID:15155733   PMID:15214576   PMID:15215197   PMID:15271198   PMID:15315760  
PMID:15456866   PMID:15649466   PMID:15707957   PMID:15730892   PMID:15800025   PMID:15838522   PMID:16086332   PMID:16141072   PMID:16141073   PMID:16183859   PMID:16237170   PMID:16428455  
PMID:16698852   PMID:16809773   PMID:17000767   PMID:17098235   PMID:17098733   PMID:17274640   PMID:17276355   PMID:17325033   PMID:17498682   PMID:17968459   PMID:18356301   PMID:18592162  
PMID:18725516   PMID:19001847   PMID:19082485   PMID:19371398   PMID:19520787   PMID:19592082   PMID:19735653   PMID:20215406   PMID:20499347   PMID:21677750   PMID:21731673   PMID:21768366  
PMID:21873635   PMID:22241836   PMID:22366453   PMID:22560297   PMID:22957921   PMID:23112860   PMID:24045954   PMID:24067652   PMID:24143284   PMID:24184637   PMID:24478334   PMID:24862038  
PMID:24904232   PMID:24959908   PMID:25785996   PMID:26080083   PMID:26542706   PMID:26966181   PMID:28301569   PMID:28380054   PMID:28768199   PMID:29950673   PMID:30152757   PMID:31024075  
PMID:31634485   PMID:31932482   PMID:32030765   PMID:32325033   PMID:32366979   PMID:32703236   PMID:33147210   PMID:33667714   PMID:34246625  


Genomics

Comparative Map Data
Ccna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,952,890 - 54,965,055 (-)NCBIGRCm39mm39
GRCm39 Ensembl354,952,890 - 54,962,922 (-)Ensembl
GRCm38355,045,469 - 55,057,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,045,469 - 55,055,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv37354,849,391 - 54,858,977 (-)NCBIGRCm37mm9NCBIm37
MGSCv36355,133,404 - 55,142,984 (-)NCBImm8
Celera354,763,020 - 54,772,599 (-)NCBICelera
Cytogenetic Map3CNCBI
CCNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1336,431,520 - 36,442,870 (+)EnsemblGRCh38hg38GRCh38
GRCh381336,430,488 - 36,442,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,006,092 - 37,017,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361335,904,633 - 35,915,008 (+)NCBINCBI36hg18NCBI36
Build 341335,904,632 - 35,915,008NCBI
Celera1318,073,175 - 18,084,229 (+)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1317,817,953 - 17,828,979 (+)NCBIHuRef
CHM1_11336,973,445 - 36,984,499 (+)NCBICHM1_1
Ccna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22139,231,738 - 139,278,066 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2139,201,074 - 139,243,157 (-)Ensembl
Rnor_6.02144,456,689 - 144,503,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2144,458,153 - 144,467,912 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02163,874,794 - 163,886,211 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,275,211 - 144,285,196 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12144,225,173 - 144,235,159 (-)NCBI
Celera2133,716,972 - 133,726,933 (-)NCBICelera
Cytogenetic Map2q26NCBI
Ccna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,658,015 - 9,668,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,658,301 - 9,668,659 (-)NCBIChiLan1.0ChiLan1.0
CCNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,080,331 - 36,092,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,080,331 - 36,092,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01317,649,064 - 17,660,550 (+)NCBIMhudiblu_PPA_v0panPan3
CCNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,189,457 - 4,198,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,189,457 - 4,198,373 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,219,718 - 4,228,956 (-)NCBI
ROS_Cfam_1.0254,288,085 - 4,297,327 (-)NCBI
UMICH_Zoey_3.1254,195,452 - 4,204,690 (-)NCBI
UNSW_CanFamBas_1.0254,191,619 - 4,200,848 (-)NCBI
UU_Cfam_GSD_1.0254,255,371 - 4,264,612 (-)NCBI
Ccna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945165,363,959 - 165,379,007 (-)NCBI
SpeTri2.0NW_00493647230,574,957 - 30,586,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,396,149 - 12,405,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,355,480 - 12,364,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1314,979,775 - 14,992,609 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl314,982,392 - 14,993,562 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605729,300,504 - 29,312,984 (-)NCBIVero_WHO_p1.0
Ccna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624776941,107 - 951,256 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
X84311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38355,045,568 - 55,045,662UniSTSGRCm38
MGSCv37354,849,490 - 54,849,584UniSTSGRCm37
Celera354,763,119 - 54,763,213UniSTS
Cytogenetic Map3CUniSTS
Whitehead/MRC_RH3498.87UniSTS
mCcna1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3CUniSTS
PMC86923P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38355,049,749 - 55,050,640UniSTSGRCm38
MGSCv37354,853,671 - 54,854,562UniSTSGRCm37
Celera354,767,300 - 54,768,184UniSTS
Cytogenetic Map3CUniSTS
X84311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38355,045,474 - 55,045,606UniSTSGRCm38
MGSCv37354,849,396 - 54,849,528UniSTSGRCm37
Celera354,763,025 - 54,763,157UniSTS
Cytogenetic Map3CUniSTS
Whitehead/MRC_RH3495.22UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3752111468809613Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1018416183277639Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31018416183277639Mouse
1357857Lvrq5_mliver weight QTL 5 (mouse)Not determined31018416183277639Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31018416183277639Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1018416183277639Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1018416183277639Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31018416183277639Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33188340565883548Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33258161158109942Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33258161158109942Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33358101667581166Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33384462467844807Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33384462467844807Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33426332068263320Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33466868268668682Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33550000069500000Mouse
14746977Manh53_mmandible shape 53 (mouse)33601785970017859Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33712559368809613Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33979668173796810Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33979668173796810Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33979668173796810Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33979668173796810Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34400000065400000Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)344000000101700000Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4945016083450160Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34958758483587697Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34958758483587697Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)352000000102400000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35271817686718412Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35271817686718412Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35271817686718412Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35301585087015850Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:62
Interacting mature miRNAs:63
Transcripts:ENSMUST00000029368
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB573804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB610316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH771158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X84311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029368   ⟹   ENSMUSP00000029368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,952,896 - 54,962,476 (-)Ensembl
GRCm38.p6 Ensembl355,045,475 - 55,055,055 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197238   ⟹   ENSMUSP00000142692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,952,899 - 54,962,922 (-)Ensembl
GRCm38.p6 Ensembl355,045,478 - 55,055,501 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198102   ⟹   ENSMUSP00000142706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,952,890 - 54,958,059 (-)Ensembl
GRCm38.p6 Ensembl355,045,469 - 55,050,638 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198320   ⟹   ENSMUSP00000143447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,952,898 - 54,962,463 (-)Ensembl
GRCm38.p6 Ensembl355,045,477 - 55,055,042 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199144   ⟹   ENSMUSP00000143275
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,958,007 - 54,962,903 (-)Ensembl
GRCm38.p6 Ensembl355,050,586 - 55,055,482 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199352   ⟹   ENSMUSP00000143555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl354,958,401 - 54,962,458 (-)Ensembl
GRCm38.p6 Ensembl355,050,980 - 55,055,037 (-)Ensembl
RefSeq Acc Id: NM_001305221   ⟹   NP_001292150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,476 (-)NCBI
GRCm38355,045,469 - 55,055,055 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007628   ⟹   NP_031654
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,476 (-)NCBI
GRCm38355,045,469 - 55,055,055 (-)NCBI
MGSCv37354,849,391 - 54,858,977 (-)RGD
Celera354,763,020 - 54,772,599 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500949   ⟹   XP_006501012
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,556 (-)NCBI
GRCm38355,045,469 - 55,055,138 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500950   ⟹   XP_006501013
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,556 (-)NCBI
GRCm38355,045,469 - 55,055,138 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500951   ⟹   XP_006501014
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,751 (-)NCBI
GRCm38355,045,469 - 55,057,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500952   ⟹   XP_006501015
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,739 (-)NCBI
GRCm38355,045,469 - 55,057,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500954   ⟹   XP_006501017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,565 (-)NCBI
GRCm38355,045,469 - 55,055,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252399   ⟹   XP_030108259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,562 (-)NCBI
GRCm38355,045,469 - 55,055,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252400   ⟹   XP_030108260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,965,055 (-)NCBI
GRCm38355,045,469 - 55,057,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252401   ⟹   XP_030108261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,336 (-)NCBI
GRCm38355,045,469 - 55,054,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252402   ⟹   XP_030108262
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,965,055 (-)NCBI
GRCm38355,045,469 - 55,057,634 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162873   ⟹   XP_036018766
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162874   ⟹   XP_036018767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162875   ⟹   XP_036018768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162876   ⟹   XP_036018769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,571 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954275
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,567 (-)NCBI
GRCm38355,045,469 - 55,055,149 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941268
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,567 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941269
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39354,952,890 - 54,962,567 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031654   ⟸   NM_007628
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501014   ⟸   XM_006500951
- Peptide Label: isoform X1
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501015   ⟸   XM_006500952
- Peptide Label: isoform X1
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501017   ⟸   XM_006500954
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006501012   ⟸   XM_006500949
- Peptide Label: isoform X1
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501013   ⟸   XM_006500950
- Peptide Label: isoform X1
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001292150   ⟸   NM_001305221
- UniProtKB: Q61456 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030108260   ⟸   XM_030252400
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108262   ⟸   XM_030252402
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030108259   ⟸   XM_030252399
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108261   ⟸   XM_030252401
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000142706   ⟸   ENSMUST00000198102
RefSeq Acc Id: ENSMUSP00000143447   ⟸   ENSMUST00000198320
RefSeq Acc Id: ENSMUSP00000142692   ⟸   ENSMUST00000197238
RefSeq Acc Id: ENSMUSP00000029368   ⟸   ENSMUST00000029368
RefSeq Acc Id: ENSMUSP00000143275   ⟸   ENSMUST00000199144
RefSeq Acc Id: ENSMUSP00000143555   ⟸   ENSMUST00000199352
RefSeq Acc Id: XP_036018768   ⟸   XM_036162875
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036018769   ⟸   XM_036162876
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036018766   ⟸   XM_036162873
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036018767   ⟸   XM_036162874
- Peptide Label: isoform X4
Protein Domains
Cyclin N-terminal

Promoters
RGD ID:6880670
Promoter ID:EPDNEW_M3786
Type:initiation region
Name:Ccna1_1
Description:Mus musculus cyclin A1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38355,054,997 - 55,055,057EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108042 AgrOrtholog
Ensembl Genes ENSMUSG00000027793 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029368 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142692 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142706 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000143275 UniProtKB/TrEMBL
  ENSMUSP00000143447 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143555 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029368 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000197238 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000198102 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000198320 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000199144 UniProtKB/TrEMBL
  ENSMUST00000199352 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12427 UniProtKB/Swiss-Prot
MGD MGI:108042 ENTREZGENE
NCBI Gene 12427 ENTREZGENE
PANTHER PTHR10177 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CCNA1 RGD
PhenoGen Ccna1 PhenoGen
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEB5_MOUSE UniProtKB/TrEMBL
  A0A0G2JFR4_MOUSE UniProtKB/TrEMBL
  A0A0G2JGG4_MOUSE UniProtKB/TrEMBL
  CCNA1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8C5U1 UniProtKB/Swiss-Prot