Rpl26 (ribosomal protein L26) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rpl26 (ribosomal protein L26) Mus musculus
Analyze
Symbol: Rpl26
Name: ribosomal protein L26
RGD ID: 1321611
MGI Page MGI
Description: Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 11. Orthologous to human RPL26 (ribosomal protein L26); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 60S ribosomal protein L26; SIG-; SIG-20; silica-induced gene 20 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm10136   Gm15772   Rpl26-ps1   Rpl26-ps2   Rpl26-ps3   Rpl26-ps4   Rpl26-ps5   Rpl26-ps6  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,792,392 - 68,795,360 (+)NCBIGRCm39mm39
GRCm39 Ensembl1168,792,409 - 68,797,815 (+)Ensembl
GRCm381168,901,566 - 68,904,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,901,583 - 68,906,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,715,068 - 68,718,036 (+)NCBIGRCm37mm9NCBIm37
MGSCv3653,242,396 - 3,242,934 (+)NCBImm8
Celera1175,851,533 - 75,854,505 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7868883   PMID:7868905   PMID:8538365   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16213212   PMID:18799693   PMID:21045808   PMID:21267068   PMID:21460039   PMID:21529712   PMID:21677750   PMID:21873635   PMID:24457600  
PMID:26584622   PMID:28378742   PMID:29091030   PMID:29530978   PMID:30068389   PMID:30595499   PMID:32325033  


Genomics

Comparative Map Data
Rpl26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,792,392 - 68,795,360 (+)NCBIGRCm39mm39
GRCm39 Ensembl1168,792,409 - 68,797,815 (+)Ensembl
GRCm381168,901,566 - 68,904,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,901,583 - 68,906,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,715,068 - 68,718,036 (+)NCBIGRCm37mm9NCBIm37
MGSCv3653,242,396 - 3,242,934 (+)NCBImm8
Celera1175,851,533 - 75,854,505 (+)NCBICelera
Cytogenetic Map11B3NCBI
RPL26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl178,377,516 - 8,383,213 (-)EnsemblGRCh38hg38GRCh38
GRCh38178,377,516 - 8,383,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37178,280,834 - 8,286,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,221,559 - 8,227,290 (-)NCBINCBI36hg18NCBI36
Build 34178,221,564 - 8,227,234NCBI
Celera178,311,586 - 8,317,314 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef178,175,458 - 8,181,187 (-)NCBIHuRef
CHM1_1178,289,725 - 8,295,454 (-)NCBICHM1_1
CRA_TCAGchr7v27142,647,142 - 142,647,658 (-)NCBI
Rpl26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21053,610,836 - 53,613,966 (+)NCBI
Rnor_6.0 Ensembl1055,492,404 - 55,496,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01055,492,417 - 55,495,547 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,234,665 - 55,238,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,662,220 - 55,665,752 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11055,675,648 - 55,678,904 (+)NCBI
Celera1052,777,155 - 52,780,285 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rpl26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,519,760 - 8,527,182 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,519,760 - 8,525,514 (+)NCBIChiLan1.0ChiLan1.0
RPL26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11748,008,951 - 48,015,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,009,198 - 48,015,977 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01743,274,839 - 43,282,606 (+)NCBIMhudiblu_PPA_v0panPan3
RPL26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl533,152,113 - 33,158,302 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1533,152,114 - 33,158,237 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rpl26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365951,603,913 - 1,609,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,548,321 - 53,553,451 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,548,313 - 53,553,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,024,039 - 56,029,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL26
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,733,652 - 7,740,384 (-)NCBI
ChlSab1.1 Ensembl167,732,921 - 7,740,325 (-)Ensembl
Rpl26
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,948,624 - 10,953,381 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:525
Count of miRNA genes:282
Interacting mature miRNAs:305
Transcripts:ENSMUST00000073471, ENSMUST00000101014, ENSMUST00000128952, ENSMUST00000134403, ENSMUST00000138973, ENSMUST00000167436
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000073471   ⟹   ENSMUSP00000073175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,901,583 - 68,904,534 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101014   ⟹   ENSMUSP00000098576
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,901,610 - 68,904,510 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128952   ⟹   ENSMUSP00000119329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,901,627 - 68,903,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,902,853 - 68,904,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138973
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,903,234 - 68,906,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167436   ⟹   ENSMUSP00000129072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,901,635 - 68,904,533 (+)Ensembl
RefSeq Acc Id: NM_009080   ⟹   NP_033106
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,792,392 - 68,795,360 (+)NCBI
GRCm381168,901,566 - 68,904,534 (+)NCBI
MGSCv371168,715,068 - 68,718,036 (+)RGD
Celera1175,851,533 - 75,854,505 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033106   ⟸   NM_009080
- UniProtKB: P61255 (UniProtKB/Swiss-Prot),   Q4FZH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073175   ⟸   ENSMUST00000073471
RefSeq Acc Id: ENSMUSP00000098576   ⟸   ENSMUST00000101014
RefSeq Acc Id: ENSMUSP00000129072   ⟸   ENSMUST00000167436
RefSeq Acc Id: ENSMUSP00000119329   ⟸   ENSMUST00000128952
Protein Domains
KOW

Promoters
RGD ID:6821996
Promoter ID:MM_KWN:8001
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101014,   NM_009080,   OTTMUST00000013252,   UC007JOI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,714,881 - 68,715,381 (+)MPROMDB
RGD ID:6821997
Promoter ID:MM_KWN:8002
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   MEF_B6
Transcripts:OTTMUST00000013253,   OTTMUST00000013254
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,715,596 - 68,716,417 (+)MPROMDB
RGD ID:8675122
Promoter ID:EPDNEW_M15592
Type:initiation region
Name:Rpl26-2_1
Description:Mus musculus ribosomal protein L26 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381168,901,589 - 68,901,649EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106022 AgrOrtholog
Ensembl Genes ENSMUSG00000060938 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073175 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098576 UniProtKB/TrEMBL
  ENSMUSP00000119329 UniProtKB/TrEMBL
  ENSMUSP00000129072 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000073471 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101014 UniProtKB/TrEMBL
  ENSMUST00000128952 UniProtKB/TrEMBL
  ENSMUST00000167436 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KOW UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19941 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:106022 ENTREZGENE
NCBI Gene 19941 ENTREZGENE
PANTHER PTHR11143 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KOW UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl26 PhenoGen
PROSITE RIBOSOMAL_L24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KOW UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs rplX_A_E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ARA3_MOUSE UniProtKB/TrEMBL
  B1ARA5_MOUSE UniProtKB/TrEMBL
  P61255 ENTREZGENE
  Q4FZH2 ENTREZGENE, UniProtKB/TrEMBL
  RL26_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q02877 UniProtKB/Swiss-Prot