Rpl26 (ribosomal protein L26) - Rat Genome Database

Name: Rpl26
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rpl26 (ribosomal protein L26) Mus musculus

Analyze

Symbol:

Rpl26

Name:

ribosomal protein L26

RGD ID:

1321611

MGI Page

MGI

Description:

Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 11. Orthologous to human RPL26 (ribosomal protein L26); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

60S ribosomal protein L26; SIG-; SIG-20; silica-induced gene 20 protein

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL26 (ribosomal protein L26)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, Panther, Treefam
Rattus norvegicus (Norway rat):	Rpl26 (ribosomal protein L26)	HGNC	NCBI, OMA, HomoloGene, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rpl26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RPL26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl26 (ribosomal protein L26)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPL26L1 (ribosomal protein L26 like 1)	HGNC	OMA, OrthoDB
Alliance orthologs ³
Homo sapiens (human):	RPL26 (ribosomal protein L26)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)
Rattus norvegicus (Norway rat):	LOC688981 (similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20))	Alliance	DIOPT (OMA\|PANTHER)
Danio rerio (zebrafish):	rpl26 (ribosomal protein L26)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	rpl-26	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Saccharomyces cerevisiae (baker's yeast):	RPL26A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	RPL26B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	RpL26	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Related Pseudogenes:

Gm10136 Gm15772 Rpl26-ps1 Rpl26-ps2 Rpl26-ps3 Rpl26-ps4 Rpl26-ps5 Rpl26-ps6

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	68,792,392 - 68,795,360 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	68,792,409 - 68,797,815 (+)	Ensembl
GRCm38	11	68,901,566 - 68,904,534 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	68,901,583 - 68,906,989 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	68,715,068 - 68,718,036 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	3,242,396 - 3,242,934 (+)	NCBI			mm8
Celera	11	75,851,533 - 75,854,505 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Diamond-Blackfan anemia (ISO)

Diamond-Blackfan anemia 11 (ISO)

dyskeratosis congenita (ISO)

Li-Fraumeni syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

1,2-dimethylhydrazine (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

1-naphthyl isothiocyanate (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4,4'-diaminodiphenylmethane (EXP)

ammonium chloride (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

bortezomib (ISO)

butan-1-ol (ISO)

cadmium dichloride (ISO)

caffeine (EXP)

chloropicrin (ISO)

chromium(6+) (EXP)

cylindrospermopsin (EXP)

diarsenic trioxide (ISO)

dicrotophos (ISO)

enzyme inhibitor (ISO)

ethanol (EXP)

folic acid (EXP)

hydralazine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methotrexate (ISO)

N-nitrosodiethylamine (ISO)

nicotine (EXP)

paracetamol (EXP)

phenethyl caffeate (ISO)

PhIP (ISO)

pyrogallol (EXP)

sodium arsenite (EXP,ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

tungsten (EXP)

valproic acid (EXP,ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to gamma radiation (ISO)

cellular response to ionizing radiation (IMP)

cellular response to UV (ISO)

cytoplasmic translation (IBA)

DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (IDA,ISO)

positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ISO)

positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (IMP,ISO)

positive regulation of translation (ISO)

regulation of translation involved in cellular response to UV (ISO)

response to amino acid starvation (ISO)

ribosomal large subunit biogenesis (IBA,ISO)

rRNA processing (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (TAS)

cytosolic large ribosomal subunit (IBA,ISO)

cytosolic ribosome (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

ribonucleoprotein complex (ISO)

terminal bouton (ISO)

Molecular Function

mRNA 5'-UTR binding (ISO)

protein binding (IPI,ISO)

RNA binding (IBA)

structural constituent of ribosome (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated


1.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
3.	MGD data from the GO Consortium
4.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	OMIM Disease Annotation Pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7868883	PMID:7868905	PMID:8538365	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12904583	PMID:14610273	PMID:15489334
PMID:15782199	PMID:16141072	PMID:16141073	PMID:16213212	PMID:18799693	PMID:21045808	PMID:21267068	PMID:21460039	PMID:21529712	PMID:21677750	PMID:21873635	PMID:24457600
PMID:26584622	PMID:28378742	PMID:29091030	PMID:29530978	PMID:30068389	PMID:30595499	PMID:32325033

Genomics

Comparative Map Data

Rpl26
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	68,792,392 - 68,795,360 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	68,792,409 - 68,797,815 (+)	Ensembl
GRCm38	11	68,901,566 - 68,904,534 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	68,901,583 - 68,906,989 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	68,715,068 - 68,718,036 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	3,242,396 - 3,242,934 (+)	NCBI			mm8
Celera	11	75,851,533 - 75,854,505 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI

RPL26
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	8,377,516 - 8,383,213 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	8,377,516 - 8,383,193 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	8,280,834 - 8,286,511 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	8,221,559 - 8,227,290 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	8,221,564 - 8,227,234	NCBI
Celera	17	8,311,586 - 8,317,314 (-)	NCBI
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	8,175,458 - 8,181,187 (-)	NCBI		HuRef
CHM1_1	17	8,289,725 - 8,295,454 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	142,647,142 - 142,647,658 (-)	NCBI

Rpl26
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	53,610,836 - 53,613,966 (+)	NCBI
Rnor_6.0 Ensembl	10	55,492,404 - 55,496,012 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	55,492,417 - 55,495,547 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	55,234,665 - 55,238,391 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	55,662,220 - 55,665,752 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	55,675,648 - 55,678,904 (+)	NCBI
Celera	10	52,777,155 - 52,780,285 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Rpl26
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	8,519,760 - 8,527,182 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	8,519,760 - 8,525,514 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL26
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	48,008,951 - 48,015,977 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	48,009,198 - 48,015,977 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	43,274,839 - 43,282,606 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RPL26
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	33,152,113 - 33,158,302 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	33,152,114 - 33,158,237 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rpl26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936595	1,603,913 - 1,609,125 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL26
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	53,548,321 - 53,553,451 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	53,548,313 - 53,553,453 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	56,024,039 - 56,029,520 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL26
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	7,733,652 - 7,740,384 (-)	NCBI
ChlSab1.1 Ensembl	16	7,732,921 - 7,740,325 (-)	Ensembl

Rpl26
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	10,948,624 - 10,953,381 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3300000	72800000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
1559002	Lmrq4_m	Leishmania major resistance QTL 4 (mouse)			Not determined		11	12318637	69794121	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
1357782	Char8_m	P. chabaudi malaria resistance QTL 8 (mouse)			Not determined		11	35687789	69794161	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
1301788	Lbw8_m	lupus NZB x NZW 8 (mouse)			Not determined		11	36612460	70618665	Mouse
1301896	Tria1_m	T-cell receptor induced activation 1 (mouse)			Not determined		11	36722738	70723028	Mouse
4141853	Skmw17_m	skeletal muscle weight 17 (mouse)			Not determined		11	37190115	71190238	Mouse
10766457	Nwa3_m	New Zealand White autoimmunity 3 (mouse)					11	38125289	72125383	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42365791	76365904	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42365791	76365904	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44739211	76963931	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55394159	72319101	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58599729	74863932	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
11532697	Sluc36_m	susceptibility to lung cancer 36 (mouse)					11	59365791	69591873	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62700000	109500000	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63428581	81939647	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63428581	94173092	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64939510	98939647	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64939510	98939647	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64939510	98939647	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66842594	100842826	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66842594	100842826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66842594	100842826	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66842594	100842826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67187365	79923086	Mouse
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68300000	102000000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	525
Count of miRNA genes:	282
Interacting mature miRNAs:	305
Transcripts:	ENSMUST00000073471, ENSMUST00000101014, ENSMUST00000128952, ENSMUST00000134403, ENSMUST00000138973, ENSMUST00000167436
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_009080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK135286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL603662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY110756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000073471 ⟹ ENSMUSP00000073175

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,901,583 - 68,904,534 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000101014 ⟹ ENSMUSP00000098576

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,901,610 - 68,904,510 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000128952 ⟹ ENSMUSP00000119329

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,901,627 - 68,903,319 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000134403

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,902,853 - 68,904,533 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000138973

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,903,234 - 68,906,989 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000167436 ⟹ ENSMUSP00000129072

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	68,901,635 - 68,904,533 (+)	Ensembl

RefSeq Acc Id:

NM_009080 ⟹ NP_033106

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	68,792,392 - 68,795,360 (+)	NCBI
GRCm38	11	68,901,566 - 68,904,534 (+)	NCBI
MGSCv37	11	68,715,068 - 68,718,036 (+)	RGD
Celera	11	75,851,533 - 75,854,505 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

AGAACCGGAAGTCGCGTGTAGTTCTCTTTCCTTTTGCGGCCATCGGTGGATCGCAGCCGCCAAA
ATGAAGTTCAATCCCTTCGTGACTTCTGACCGAAGCAAGAACCGCAAACGGCATTTCAATGCGC
CCTCTCACATTCGGAGGAAGATCATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTATAA
CGTTCGGTCTATGCCCATTCGGAAGGATGACGAAGTTCAGGTTGTTCGCGGACACTACAAAGGC
CAGCAGATTGGCAAGGTGGTCCAAGTGTACAGGAAGAAGTACGTCATCTACATCGAACGAGTCC
AGCGAGAGAAGGCTAATGGCACAACCGTCCATGTGGGCATCCACCCCAGCAAGGTCGTTATCAC
CAGGCTAAAGCTGGACAAGGACCGCAAGAAGATCCTGGAGAGGAAAGCCAAGTCCCGACAAGTA
GGAAAGGAGAAGGGCAAATACAAGGAAGAAACGATCGAGAAGATGCAGGAGTAGAGACATCTCG
TGCACGGCTTTCATTAAAGACTGCTTAAGTAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_033106	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH70397	(Get FASTA)	NCBI Sequence Viewer
	AAH99481	(Get FASTA)	NCBI Sequence Viewer
	BAE22475	(Get FASTA)	NCBI Sequence Viewer
	BAE26911	(Get FASTA)	NCBI Sequence Viewer
	BAE31338	(Get FASTA)	NCBI Sequence Viewer
	BAE39366	(Get FASTA)	NCBI Sequence Viewer
	BAE40910	(Get FASTA)	NCBI Sequence Viewer
	EDL10456	(Get FASTA)	NCBI Sequence Viewer
	EDL10457	(Get FASTA)	NCBI Sequence Viewer
	EDL10458	(Get FASTA)	NCBI Sequence Viewer
	P61255	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_033106 ⟸ NM_009080
- UniProtKB:	P61255 (UniProtKB/Swiss-Prot), Q4FZH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKG QQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQV GKEKGKYKEETIEKMQE hide sequence

RefSeq Acc Id:

ENSMUSP00000073175 ⟸ ENSMUST00000073471

RefSeq Acc Id:

ENSMUSP00000098576 ⟸ ENSMUST00000101014

RefSeq Acc Id:

ENSMUSP00000129072 ⟸ ENSMUST00000167436

RefSeq Acc Id:

ENSMUSP00000119329 ⟸ ENSMUST00000128952

Protein Domains

KOW

Promoters

RGD ID:

6821996

Promoter ID:

MM_KWN:8001

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000101014, NM_009080, OTTMUST00000013252, UC007JOI.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	68,714,881 - 68,715,381 (+)	MPROMDB

RGD ID:

6821997

Promoter ID:

MM_KWN:8002

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day4, MEF_B6

Transcripts:

OTTMUST00000013253, OTTMUST00000013254

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	68,715,596 - 68,716,417 (+)	MPROMDB

RGD ID:

8675122

Promoter ID:

EPDNEW_M15592

Type:

initiation region

Name:

Rpl26-2_1

Description:

Mus musculus ribosomal protein L26 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	68,901,589 - 68,901,649	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:106022	AgrOrtholog
Ensembl Genes	ENSMUSG00000060938	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000073175	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000098576	UniProtKB/TrEMBL
	ENSMUSP00000119329	UniProtKB/TrEMBL
	ENSMUSP00000129072	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000073471	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000101014	UniProtKB/TrEMBL
	ENSMUST00000128952	UniProtKB/TrEMBL
	ENSMUST00000167436	UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.30.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	KOW	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KOW_RPL26/RPL24	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rib_L2_dom2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L24/26_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L26/L24P_euk/arc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Translation_prot_SH3-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19941	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:106022	ENTREZGENE
NCBI Gene	19941	ENTREZGENE
PANTHER	PTHR11143	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	KOW	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L26	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpl26	PhenoGen
PROSITE	RIBOSOMAL_L24	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	KOW	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50104	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	rplX_A_E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B1ARA3_MOUSE	UniProtKB/TrEMBL
	B1ARA5_MOUSE	UniProtKB/TrEMBL
	P61255	ENTREZGENE
	Q4FZH2	ENTREZGENE, UniProtKB/TrEMBL
	RL26_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q02877	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations