Tekt3 (tektin 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tekt3 (tektin 3) Mus musculus
Analyze
Symbol: Tekt3
Name: tektin 3
RGD ID: 1321574
MGI Page MGI
Description: Involved in cilium assembly and flagellated sperm motility. Acts upstream of with a positive effect on regulation of brood size. Located in cytoplasm. Is active in axonemal A tubule inner sheath. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human TEKT3 (tektin 3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4933407G07Rik; RP23-172P19.3; tektin-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,952,485 - 62,985,786 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,952,480 - 62,985,790 (+)EnsemblGRCm39 Ensembl
GRCm381163,061,659 - 63,094,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,061,654 - 63,094,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,875,161 - 62,908,462 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,877,854 - 62,911,155 (+)NCBIMGSCv36mm8
Celera1169,991,092 - 70,024,440 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1138.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14735490   PMID:16141072   PMID:16141073   PMID:17662146   PMID:18311719   PMID:18951373   PMID:21267068   PMID:21873635  
PMID:32325033   PMID:37295417   PMID:37709195  


Genomics

Comparative Map Data
Tekt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,952,485 - 62,985,786 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,952,480 - 62,985,790 (+)EnsemblGRCm39 Ensembl
GRCm381163,061,659 - 63,094,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,061,654 - 63,094,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,875,161 - 62,908,462 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,877,854 - 62,911,155 (+)NCBIMGSCv36mm8
Celera1169,991,092 - 70,024,440 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1138.92NCBI
TEKT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,303,812 - 15,343,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,303,811 - 15,341,632 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,207,129 - 15,244,914 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,147,854 - 15,185,624 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,147,855 - 15,185,624NCBI
Celera1715,231,709 - 15,269,545 (-)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1715,100,747 - 15,138,585 (-)NCBIHuRef
CHM1_11715,215,940 - 15,253,768 (-)NCBICHM1_1
T2T-CHM13v2.01715,209,840 - 15,249,701 (-)NCBIT2T-CHM13v2.0
Tekt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81048,228,859 - 48,262,812 (+)NCBIGRCr8
mRatBN7.21047,729,635 - 47,763,589 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,729,635 - 47,763,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1052,432,258 - 52,466,932 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,922,782 - 51,957,460 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01047,426,212 - 47,460,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01049,472,520 - 49,506,473 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1049,472,460 - 49,506,465 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01049,250,932 - 49,284,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41049,239,761 - 49,273,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11049,253,383 - 49,287,336 (+)NCBI
Celera1046,971,790 - 47,006,419 (+)NCBICelera
Cytogenetic Map10q23NCBI
Tekt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554672,347,907 - 2,381,431 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554672,347,996 - 2,381,346 (+)NCBIChiLan1.0ChiLan1.0
TEKT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21958,409,284 - 58,449,988 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11763,215,877 - 63,256,530 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01736,312,646 - 36,351,538 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11740,961,623 - 41,000,108 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1740,961,632 - 41,000,108 (+)Ensemblpanpan1.1panPan2
TEKT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1538,872,664 - 38,913,114 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl538,872,665 - 38,912,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,017,402 - 39,057,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0538,980,948 - 39,021,380 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl538,980,949 - 39,020,764 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1538,953,684 - 38,994,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0538,899,155 - 38,939,737 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,087,301 - 39,127,735 (-)NCBIUU_Cfam_GSD_1.0
Tekt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560257,845,646 - 57,950,253 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367241,815,562 - 1,843,643 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367241,815,562 - 1,843,643 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEKT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1258,734,177 - 58,789,493 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11258,734,289 - 58,773,400 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,016,542 - 62,047,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEKT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11614,602,629 - 14,641,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1614,602,753 - 14,630,773 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660596,586,666 - 6,615,023 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tekt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248773,367,201 - 3,408,582 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248773,367,466 - 3,407,917 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tekt3
983 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:45
Interacting mature miRNAs:48
Transcripts:ENSMUST00000035732
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000035732   ⟹   ENSMUSP00000042063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,952,480 - 62,985,790 (+)Ensembl
GRCm38.p6 Ensembl1163,061,654 - 63,094,964 (+)Ensembl
RefSeq Acc Id: NM_027660   ⟹   NP_081936
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,952,485 - 62,985,786 (+)NCBI
GRCm381163,061,659 - 63,094,960 (+)ENTREZGENE
MGSCv371162,875,161 - 62,908,462 (+)RGD
Celera1169,991,092 - 70,024,440 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_081936   ⟸   NM_027660
- UniProtKB: Q6X6Z7 (UniProtKB/Swiss-Prot),   Q5SXS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000042063   ⟸   ENSMUST00000035732

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6X6Z7-F1-model_v2 AlphaFold Q6X6Z7 1-490 view protein structure

Promoters
RGD ID:8675016
Promoter ID:EPDNEW_M15539
Type:initiation region
Name:Tekt3_1
Description:Mus musculus tektin 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381163,061,632 - 63,061,692EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918312 AgrOrtholog
Ensembl Genes ENSMUSG00000042189 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035732 ENTREZGENE
  ENSMUST00000035732.5 UniProtKB/Swiss-Prot
InterPro Tektin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tektin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71062 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1918312 ENTREZGENE
NCBI Gene 71062 ENTREZGENE
PANTHER PTHR19960 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TEKTIN-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tektin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tekt3 PhenoGen
PRINTS TEKTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q5SXS5 ENTREZGENE, UniProtKB/TrEMBL
  Q6X6Z7 ENTREZGENE, UniProtKB/Swiss-Prot