Cd209g (CD209g antigen) - Rat Genome Database

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Pathways
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Gene: Cd209g (CD209g antigen) Mus musculus
Analyze
No known orthologs.
Symbol: Cd209g
Name: CD209g antigen
RGD ID: 1321533
MGI Page MGI
Description: Enables carbohydrate binding activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310066I10Rik; AI481039; SIGNR7
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3984,184,246 - 4,187,707 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl84,184,098 - 4,187,707 (+)EnsemblGRCm39 Ensembl
GRCm3884,134,246 - 4,137,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl84,134,098 - 4,137,707 (+)EnsemblGRCm38mm10GRCm38
MGSCv3784,134,246 - 4,137,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3684,128,451 - 4,137,707 (+)NCBIMGSCv36mm8
Celera84,334,261 - 4,337,722 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16682406   PMID:21677750   PMID:21873635  


Genomics

Variants

.
Variants in Cd209g
113 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:175
Interacting mature miRNAs:176
Transcripts:ENSMUST00000130372
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse

Markers in Region
AI481039  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3884,137,544 - 4,137,642UniSTSGRCm38
MGSCv3784,137,544 - 4,137,642UniSTSGRCm37
Celera84,337,559 - 4,337,657UniSTS
Cytogenetic Map8A1.1UniSTS
Whitehead/MRC_RH815.16UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000130372   ⟹   ENSMUSP00000116397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl84,184,652 - 4,187,707 (+)Ensembl
GRCm38.p6 Ensembl84,134,652 - 4,137,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl84,184,098 - 4,187,516 (+)Ensembl
GRCm38.p6 Ensembl84,134,098 - 4,137,516 (+)Ensembl
RefSeq Acc Id: NM_027343   ⟹   NP_081619
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3984,184,736 - 4,187,707 (+)NCBI
GRCm3884,134,736 - 4,137,707 (+)NCBI
Celera84,334,751 - 4,337,722 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508885   ⟹   XP_006508948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3984,184,246 - 4,187,707 (+)NCBI
GRCm3884,134,246 - 4,137,707 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_081619 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508948 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI18543 (Get FASTA)   NCBI Sequence Viewer  
  CAL15171 (Get FASTA)   NCBI Sequence Viewer  
  EDL21967 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000116397
  ENSMUSP00000116397.2
Reference Protein Sequences
RefSeq Acc Id: NP_081619   ⟸   NM_027343
- UniProtKB: D3Z5D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508948   ⟸   XM_006508885
- Peptide Label: isoform X1
- UniProtKB: Q14FK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116397   ⟸   ENSMUST00000130372
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z5D4-F1-model_v2 AlphaFold D3Z5D4 1-194 view protein structure

Promoters
RGD ID:8666367
Promoter ID:EPDNEW_M11214
Type:single initiation site
Name:Cd209g_1
Description:Mus musculus CD209g antigen , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3884,134,721 - 4,134,781EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917442 AgrOrtholog
Ensembl Genes ENSMUSG00000079168 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000130372 ENTREZGENE
  ENSMUST00000130372.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
KEGG Report mmu:70192 UniProtKB/TrEMBL
MGD MGI:1917442 ENTREZGENE
NCBI Gene 70192 ENTREZGENE
PANTHER CD209 ANTIGEN-LIKE PROTEIN C-LIKE UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Cd209g PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
UniProt D3Z5D4 ENTREZGENE, UniProtKB/TrEMBL
  Q147Z0_MOUSE UniProtKB/TrEMBL
  Q14FK5 ENTREZGENE, UniProtKB/TrEMBL