AI597479 (expressed sequence AI597479) - Rat Genome Database

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Gene: AI597479 (expressed sequence AI597479) Mus musculus
Analyze
Symbol: AI597479
Name: expressed sequence AI597479
RGD ID: 1321522
MGI Page MGI
Description: Predicted to be involved in embryonic morphogenesis. Predicted to be located in nucleus. Predicted to be part of tRNA-splicing ligase complex. Orthologous to human C2orf49 (chromosome 2 open reading frame 49).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ashwin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,137,870 - 43,155,106 (+)NCBIGRCm39mm39
GRCm39 Ensembl143,137,870 - 43,155,107 (+)Ensembl
GRCm38143,098,710 - 43,115,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,098,710 - 43,115,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv37143,155,555 - 43,172,791 (+)NCBIGRCm37mm9NCBIm37
MGSCv36143,043,256 - 43,060,492 (+)NCBImm8
Celera143,437,163 - 43,454,400 (+)NCBICelera
Cytogenetic Map1B- C1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21873635  


Genomics

Comparative Map Data
AI597479
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,137,870 - 43,155,106 (+)NCBIGRCm39mm39
GRCm39 Ensembl143,137,870 - 43,155,107 (+)Ensembl
GRCm38143,098,710 - 43,115,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,098,710 - 43,115,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv37143,155,555 - 43,172,791 (+)NCBIGRCm37mm9NCBIm37
MGSCv36143,043,256 - 43,060,492 (+)NCBImm8
Celera143,437,163 - 43,454,400 (+)NCBICelera
Cytogenetic Map1B- C1.1NCBI
C2orf49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382105,337,540 - 105,385,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2105,337,532 - 105,349,211 (+)EnsemblGRCh38hg38GRCh38
GRCh372105,953,997 - 105,965,668 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362105,320,445 - 105,328,416 (+)NCBINCBI36hg18NCBI36
Celera2100,154,460 - 100,162,431 (+)NCBI
Cytogenetic Map2q12.2NCBI
HuRef299,722,503 - 99,730,474 (+)NCBIHuRef
CHM1_12105,958,321 - 105,966,292 (+)NCBICHM1_1
RGD1310553
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2945,371,396 - 45,382,123 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl945,371,430 - 45,382,120 (+)Ensembl
Rnor_6.0949,903,085 - 49,913,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,903,085 - 49,913,744 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0949,573,659 - 49,584,328 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4942,302,028 - 42,312,697 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1942,303,441 - 42,314,110 (+)NCBI
Celera943,089,365 - 43,100,034 (+)NCBICelera
Cytogenetic Map9q22NCBI
LOC102026964
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,223,467 - 10,234,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,223,467 - 10,234,309 (+)NCBIChiLan1.0ChiLan1.0
C2AH2orf49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A106,422,944 - 106,445,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A106,422,944 - 106,445,634 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A96,469,934 - 96,492,745 (-)NCBIMhudiblu_PPA_v0panPan3
C10H2orf49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11038,077,162 - 38,089,899 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1038,080,267 - 38,089,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1038,003,434 - 38,015,103 (-)NCBI
ROS_Cfam_1.01038,934,229 - 38,945,916 (-)NCBI
ROS_Cfam_1.0 Ensembl1038,934,231 - 38,945,854 (-)Ensembl
UMICH_Zoey_3.11038,658,842 - 38,670,508 (-)NCBI
UNSW_CanFamBas_1.01038,938,155 - 38,949,836 (-)NCBI
UU_Cfam_GSD_1.01039,130,029 - 39,141,715 (-)NCBI
CUNH2orf49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629287,232,379 - 87,252,777 (-)NCBI
SpeTri2.0NW_004936764656,431 - 675,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl349,454,560 - 49,465,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1349,454,558 - 49,465,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH2orf49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1148,970,846 - 8,982,525 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl148,971,076 - 8,978,610 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041176,690,799 - 176,703,947 (+)NCBIVero_WHO_p1.0
CUNH2orf49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247499,437,322 - 9,448,119 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI597479  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38143,115,662 - 43,115,791UniSTSGRCm38
MGSCv37143,172,507 - 43,172,636UniSTSGRCm37
Celera143,454,116 - 43,454,245UniSTS
Cytogenetic Map1BUniSTS
Whitehead/MRC_RH1689.6UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:888
Count of miRNA genes:501
Interacting mature miRNAs:606
Transcripts:ENSMUST00000010434
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000010434   ⟹   ENSMUSP00000010434
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl143,137,870 - 43,155,107 (+)Ensembl
GRCm38.p6 Ensembl143,098,710 - 43,115,947 (+)Ensembl
RefSeq Acc Id: NM_133818   ⟹   NP_598579
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39143,137,870 - 43,155,106 (+)NCBI
GRCm38143,098,710 - 43,115,946 (+)ENTREZGENE
MGSCv37143,155,555 - 43,172,791 (+)RGD
Celera143,437,163 - 43,454,400 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598579 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06931 (Get FASTA)   NCBI Sequence Viewer  
  BAC38205 (Get FASTA)   NCBI Sequence Viewer  
  EDK96915 (Get FASTA)   NCBI Sequence Viewer  
  Q922M7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598579   ⟸   NM_133818
- UniProtKB: Q922M7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000010434   ⟸   ENSMUST00000010434

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q922M7-F1-model_v2 AlphaFold Q922M7 1-232 view protein structure

Promoters
RGD ID:6873600
Promoter ID:EPDNEW_M251
Type:initiation region
Name:AI597479_1
Description:Mus musculus expressed sequence AI597479 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38143,098,720 - 43,098,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2138299 AgrOrtholog
Ensembl Genes ENSMUSG00000010290 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000010434 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000010434 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Ashwin UniProtKB/Swiss-Prot
KEGG Report mmu:98404 UniProtKB/Swiss-Prot
MGD MGI:2138299 ENTREZGENE
NCBI Gene 98404 ENTREZGENE
PANTHER PTHR28359 UniProtKB/Swiss-Prot
Pfam Ashwin UniProtKB/Swiss-Prot
PhenoGen AI597479 PhenoGen
UniProt ASHWN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE