Cog4 (component of oligomeric golgi complex 4) - Rat Genome Database

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Gene: Cog4 (component of oligomeric golgi complex 4) Mus musculus
Analyze
Symbol: Cog4
Name: component of oligomeric golgi complex 4
RGD ID: 1321516
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Predicted to be involved in Golgi organization; Golgi vesicle transport; and glycosylation. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in Saul-Wilson syndrome and congenital disorder of glycosylation type IIj. Orthologous to human COG4 (component of oligomeric golgi complex 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW554810; COG complex subunit 4; conserved oligomeric Golgi complex subunit 4; D8Ertd515; D8Ertd515e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,573,232 - 111,608,866 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,573,232 - 111,608,859 (+)EnsemblGRCm39 Ensembl
GRCm388110,846,600 - 110,882,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,846,600 - 110,882,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv378113,370,924 - 113,406,134 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,733,724 - 113,768,902 (+)NCBIMGSCv36mm8
Celera8115,070,562 - 115,105,856 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21873635   PMID:32554809  


Genomics

Comparative Map Data
Cog4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,573,232 - 111,608,866 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,573,232 - 111,608,859 (+)EnsemblGRCm39 Ensembl
GRCm388110,846,600 - 110,882,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,846,600 - 110,882,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv378113,370,924 - 113,406,134 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,733,724 - 113,768,902 (+)NCBIMGSCv36mm8
Celera8115,070,562 - 115,105,856 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.76NCBI
COG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,480,567 - 70,523,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,480,568 - 70,523,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,514,470 - 70,557,457 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,071,973 - 69,114,958 (-)NCBINCBI36Build 36hg18NCBI36
Build 341669,071,977 - 69,114,935NCBI
Celera1654,970,686 - 55,013,821 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,346,588 - 56,388,520 (-)NCBIHuRef
CHM1_11671,921,846 - 71,964,791 (-)NCBICHM1_1
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBIT2T-CHM13v2.0
Cog4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,729,854 - 55,763,902 (+)NCBIGRCr8
mRatBN7.21938,820,478 - 38,854,803 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,820,501 - 38,854,796 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,625,539 - 45,658,998 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,278,907 - 46,312,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,589,673 - 48,623,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,358,057 - 43,391,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,358,057 - 43,391,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,191,116 - 54,224,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,769,219 - 40,803,409 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11940,774,043 - 40,808,258 (+)NCBI
Celera1938,214,041 - 38,247,592 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cog4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,279,302 - 3,307,543 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,278,624 - 3,307,580 (-)NCBIChiLan1.0ChiLan1.0
COG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21883,639,783 - 83,682,396 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11689,569,110 - 89,611,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,491,189 - 54,533,770 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,318,788 - 70,360,843 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,318,788 - 70,360,843 (-)Ensemblpanpan1.1panPan2
COG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,463,465 - 76,490,406 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,463,465 - 76,490,376 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,424,749 - 76,451,695 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,899,880 - 76,926,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,899,880 - 76,926,802 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,721,873 - 76,748,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,544,892 - 76,571,829 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,036,954 - 77,064,098 (-)NCBIUU_Cfam_GSD_1.0
Cog4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,472,911 - 36,502,714 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,086,372 - 23,119,163 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,086,406 - 23,116,203 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,490,116 - 13,524,452 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,492,876 - 13,524,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,635,045 - 53,673,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,635,485 - 53,673,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604716,431,232 - 16,471,696 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,715,437 - 12,747,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,715,437 - 12,747,187 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cog4
1116 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3554
Count of miRNA genes:874
Interacting mature miRNAs:1168
Transcripts:ENSMUST00000034203, ENSMUST00000165867, ENSMUST00000172497, ENSMUST00000172542, ENSMUST00000172668, ENSMUST00000172897, ENSMUST00000173501, ENSMUST00000173794, ENSMUST00000174165, ENSMUST00000174398, ENSMUST00000174679, ENSMUST00000174702, ENSMUST00000174723, ENSMUST00000174800
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
36049780Ars12_mantibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)8109426632113826632Mouse
36049781Arc1_mantibody response to CHIKV 1, day 7, IgG (mouse)8109426632113826632Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
11079194Tpnr6_mthermal pain response 6 (mouse)8111166632114956740Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse

Markers in Region
AW554810  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,882,029 - 110,882,146UniSTSGRCm38
MGSCv378113,405,929 - 113,406,046UniSTSGRCm37
Celera8115,105,651 - 115,105,768UniSTS
Cytogenetic Map8E1UniSTS
cM Map853.5UniSTS
Whitehead/MRC_RH81319.24UniSTS
UniSTS:236005  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,846,266 - 110,846,578UniSTSGRCm38
MGSCv378113,370,166 - 113,370,478UniSTSGRCm37
Celera8115,069,804 - 115,070,116UniSTS
Cytogenetic Map8E1UniSTS
cM Map853.5UniSTS
cM Map853.5UniSTS
AU022131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,882,001 - 110,882,217UniSTSGRCm38
MGSCv378113,405,901 - 113,406,117UniSTSGRCm37
Celera8115,105,623 - 115,105,839UniSTS
Cytogenetic Map8E1UniSTS
cM Map853.5UniSTS
Whitehead/MRC_RH81320.34UniSTS
AU015046  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388110,846,350 - 110,846,551UniSTSGRCm38
MGSCv378113,370,250 - 113,370,451UniSTSGRCm37
Celera8115,069,888 - 115,070,089UniSTS
Cytogenetic Map8E1UniSTS
cM Map853.5UniSTS
Whitehead/MRC_RH81319.69UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY223866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM226598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN843612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034203   ⟹   ENSMUSP00000034203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,666 - 111,608,859 (+)Ensembl
GRCm38.p6 Ensembl8110,847,034 - 110,882,227 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165867   ⟹   ENSMUSP00000128518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,232 - 111,608,527 (+)Ensembl
GRCm38.p6 Ensembl8110,846,600 - 110,881,895 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,607,620 - 111,608,388 (+)Ensembl
GRCm38.p6 Ensembl8110,880,988 - 110,881,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172542   ⟹   ENSMUSP00000133283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,586,491 - 111,608,497 (+)Ensembl
GRCm38.p6 Ensembl8110,859,859 - 110,881,865 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172668   ⟹   ENSMUSP00000134252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,666 - 111,578,977 (+)Ensembl
GRCm38.p6 Ensembl8110,847,034 - 110,852,345 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172897   ⟹   ENSMUSP00000133583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,683 - 111,580,461 (+)Ensembl
GRCm38.p6 Ensembl8110,847,051 - 110,853,829 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,586,336 - 111,595,053 (+)Ensembl
GRCm38.p6 Ensembl8110,859,704 - 110,868,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,589,732 - 111,593,286 (+)Ensembl
GRCm38.p6 Ensembl8110,863,100 - 110,866,654 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174165   ⟹   ENSMUSP00000134306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,656 - 111,580,360 (+)Ensembl
GRCm38.p6 Ensembl8110,847,024 - 110,853,728 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174398   ⟹   ENSMUSP00000133297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,686 - 111,608,497 (+)Ensembl
GRCm38.p6 Ensembl8110,847,054 - 110,881,865 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174679   ⟹   ENSMUSP00000133458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,576,503 - 111,608,853 (+)Ensembl
GRCm38.p6 Ensembl8110,849,871 - 110,882,221 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,671 - 111,576,905 (+)Ensembl
GRCm38.p6 Ensembl8110,847,039 - 110,850,273 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174723   ⟹   ENSMUSP00000133471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,683 - 111,580,415 (+)Ensembl
GRCm38.p6 Ensembl8110,847,051 - 110,853,783 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,573,683 - 111,580,424 (+)Ensembl
GRCm38.p6 Ensembl8110,847,051 - 110,853,792 (+)Ensembl
RefSeq Acc Id: NM_001310607   ⟹   NP_001297536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,573,232 - 111,608,866 (+)NCBI
GRCm388110,846,600 - 110,882,234 (+)NCBI
Sequence:
RefSeq Acc Id: NM_133973   ⟹   NP_598734
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,573,656 - 111,608,866 (+)NCBI
GRCm388110,847,024 - 110,882,234 (+)NCBI
MGSCv378113,370,924 - 113,406,134 (+)RGD
Celera8115,070,562 - 115,105,856 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_003947213
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,573,640 - 111,608,859 (+)NCBI
GRCm388110,847,008 - 110,882,227 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934744
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,573,640 - 111,608,859 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387727
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,573,640 - 111,608,859 (+)NCBI
GRCm388110,847,008 - 110,882,227 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_598734   ⟸   NM_133973
- Peptide Label: isoform 1
- UniProtKB: Q3T9K1 (UniProtKB/Swiss-Prot),   Q8R1U1 (UniProtKB/Swiss-Prot),   G3UWH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297536   ⟸   NM_001310607
- Peptide Label: isoform 2
- UniProtKB: Q7TSQ9 (UniProtKB/TrEMBL),   G3UWH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000133583   ⟸   ENSMUST00000172897
RefSeq Acc Id: ENSMUSP00000133283   ⟸   ENSMUST00000172542
RefSeq Acc Id: ENSMUSP00000134252   ⟸   ENSMUST00000172668
RefSeq Acc Id: ENSMUSP00000034203   ⟸   ENSMUST00000034203
RefSeq Acc Id: ENSMUSP00000128518   ⟸   ENSMUST00000165867
RefSeq Acc Id: ENSMUSP00000133471   ⟸   ENSMUST00000174723
RefSeq Acc Id: ENSMUSP00000133458   ⟸   ENSMUST00000174679
RefSeq Acc Id: ENSMUSP00000134306   ⟸   ENSMUST00000174165
RefSeq Acc Id: ENSMUSP00000133297   ⟸   ENSMUST00000174398
Protein Domains
COG4 transport protein middle alpha-helical bundle   Conserved oligomeric Golgi complex subunit 4 N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1U1-F1-model_v2 AlphaFold Q8R1U1 1-785 view protein structure

Promoters
RGD ID:8668275
Promoter ID:EPDNEW_M12169
Type:multiple initiation site
Name:Cog4_1
Description:Mus musculus component of oligomeric golgi complex 4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388110,847,038 - 110,847,098EPDNEW
RGD ID:6842956
Promoter ID:MM_KWN:55747
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_133973,   UC009NLE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368113,369,691 - 113,371,057 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2142808 AgrOrtholog
Ensembl Genes ENSMUSG00000031753 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034203 ENTREZGENE
  ENSMUST00000034203.17 UniProtKB/Swiss-Prot
  ENSMUST00000165867 ENTREZGENE
  ENSMUST00000165867.8 UniProtKB/TrEMBL
  ENSMUST00000172542.2 UniProtKB/TrEMBL
  ENSMUST00000172668.8 UniProtKB/TrEMBL
  ENSMUST00000172897.2 UniProtKB/TrEMBL
  ENSMUST00000174165.8 UniProtKB/TrEMBL
  ENSMUST00000174398.8 UniProtKB/TrEMBL
  ENSMUST00000174679.2 UniProtKB/TrEMBL
  ENSMUST00000174723.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ESAT-6-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro COG4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG_su4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:102339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2142808 ENTREZGENE
NCBI Gene 102339 ENTREZGENE
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
Pfam COG4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cog4 PhenoGen
SMART Cog4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COG4_MOUSE UniProtKB/Swiss-Prot
  G3UWH9 ENTREZGENE, UniProtKB/TrEMBL
  G3UWX2_MOUSE UniProtKB/TrEMBL
  G3UWY4_MOUSE UniProtKB/TrEMBL
  G3UX78_MOUSE UniProtKB/TrEMBL
  G3UYW8_MOUSE UniProtKB/TrEMBL
  G3UZ15_MOUSE UniProtKB/TrEMBL
  G3XA67_MOUSE UniProtKB/TrEMBL
  Q3T9K1 ENTREZGENE
  Q7TSQ9 ENTREZGENE, UniProtKB/TrEMBL
  Q8R1U1 ENTREZGENE
UniProt Secondary Q3T9K1 UniProtKB/Swiss-Prot