COG4 (component of oligomeric golgi complex 4) - Rat Genome Database

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Gene: COG4 (component of oligomeric golgi complex 4) Homo sapiens
Analyze
Symbol: COG4
Name: component of oligomeric golgi complex 4
RGD ID: 1321515
HGNC Page HGNC:18620
Description: Enables identical protein binding activity. Involved in Golgi organization; Golgi vesicle transport; and glycosylation. Part of Golgi transport complex. Implicated in Saul-Wilson syndrome and congenital disorder of glycosylation type IIj.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CDG2J; COD1; COG complex subunit 4; complexed with Dor1p; conserved oligomeric Golgi complex protein 4; conserved oligomeric Golgi complex subunit 4; DKFZp586E1519; SWILS
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,480,567 - 70,523,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,480,568 - 70,523,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,514,470 - 70,557,457 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,071,973 - 69,114,958 (-)NCBINCBI36Build 36hg18NCBI36
Build 341669,071,977 - 69,114,935NCBI
Celera1654,970,686 - 55,013,821 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,346,588 - 56,388,520 (-)NCBIHuRef
CHM1_11671,921,846 - 71,964,791 (-)NCBICHM1_1
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal facial shape  (IAGP)
Abnormal protein N-linked glycosylation  (IAGP)
Abnormal protein O-linked glycosylation  (IAGP)
Abnormality of the coagulation cascade  (IAGP)
Absent speech  (IAGP)
Ataxia  (IAGP)
Autosomal dominant inheritance  (IAGP)
Autosomal recessive inheritance  (IAGP)
Axial hypotonia  (IAGP)
Blue sclerae  (IAGP)
Cataract  (IAGP)
Cerebral atrophy  (IAGP)
Chronic diarrhea  (IAGP)
Cirrhosis  (IAGP)
Complex febrile seizure  (IAGP)
Cone-shaped epiphyses of the phalanges of the hand  (IAGP)
Congenital onset  (IAGP)
Convex nasal ridge  (IAGP)
Coxa valga  (IAGP)
Delayed gross motor development  (IAGP)
Delayed speech and language development  (IAGP)
Elevated circulating alkaline phosphatase concentration  (IAGP)
Elevated circulating hepatic transaminase concentration  (IAGP)
Enlarged epiphyses  (IAGP)
Failure to thrive  (IAGP)
Failure to thrive in infancy  (IAGP)
Fatal liver failure in infancy  (IAGP)
Feeding difficulties  (IAGP)
Flared metaphysis  (IAGP)
Frontal bossing  (IAGP)
Frontotemporal cerebral atrophy  (IAGP)
Generalized neonatal hypotonia  (IAGP)
Global developmental delay  (IAGP)
Growth delay  (IAGP)
Hearing impairment  (IAGP)
Hepatic failure  (IAGP)
Hepatomegaly  (IAGP)
Hepatosplenomegaly  (IAGP)
Hypercholesterolemia  (IAGP)
Hyperreflexia  (IAGP)
Hypoplasia of proximal fibula  (IAGP)
Hypoplasia of the corpus callosum  (IAGP)
Hypoplasia of the odontoid process  (IAGP)
Immunodeficiency  (IAGP)
Infantile onset  (IAGP)
Intermittent diarrhea  (IAGP)
Intrauterine growth retardation  (IAGP)
Irregular vertebral endplates  (IAGP)
Irregularity of vertebral bodies  (IAGP)
Irritability  (IAGP)
Limb hypertonia  (IAGP)
Madelung deformity  (IAGP)
Malar flattening  (IAGP)
Microcephaly  (IAGP)
Micrognathia  (IAGP)
Motor delay  (IAGP)
Narrow nasal bridge  (IAGP)
Neonatal sepsis  (IAGP)
Neutropenia  (IAGP)
Nyctalopia  (IAGP)
Nystagmus  (IAGP)
Overhanging nasal tip  (IAGP)
Overtubulated long bones  (IAGP)
Pectus carinatum  (IAGP)
Pectus excavatum  (IAGP)
Platyspondyly  (IAGP)
Postnatal growth retardation  (IAGP)
Progeroid facial appearance  (IAGP)
Prominent forehead  (IAGP)
Prominent superficial veins  (IAGP)
Proptosis  (IAGP)
Pseudoepiphyses of the metacarpals  (IAGP)
Recurrent infection of the gastrointestinal tract  (IAGP)
Recurrent respiratory infections  (IAGP)
Recurrent upper respiratory tract infections  (IAGP)
Seizure  (IAGP)
Sensorineural hearing impairment  (IAGP)
Short distal phalanx of finger  (IAGP)
Short metacarpal  (IAGP)
Short metatarsal  (IAGP)
Short palm  (IAGP)
Short stature  (IAGP)
Sloping forehead  (IAGP)
Small hand  (IAGP)
Spinal cord compression  (IAGP)
Splenomegaly  (IAGP)
Syringomyelia  (IAGP)
Talipes equinovarus  (IAGP)
Thick hair  (IAGP)
Thrombocytopenia  (IAGP)
Type II transferrin isoform profile  (IAGP)
Ventriculomegaly  (IAGP)
Wide anterior fontanel  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:11703943   PMID:11929878   PMID:11980916   PMID:12477932   PMID:14702039   PMID:14759258   PMID:15047703   PMID:15342556   PMID:15489334   PMID:16344560   PMID:18187620   PMID:19494034  
PMID:19536132   PMID:19651599   PMID:20301507   PMID:20936779   PMID:21145461   PMID:21873635   PMID:21900206   PMID:22939629   PMID:23383273   PMID:23956138   PMID:25231870   PMID:25921289  
PMID:26186194   PMID:26344197   PMID:26496610   PMID:26514267   PMID:27066481   PMID:28514442   PMID:29467253   PMID:30290151   PMID:30833792   PMID:31056421   PMID:31091453   PMID:32078278  
PMID:32235678   PMID:32296183   PMID:32652690   PMID:32838362   PMID:33194618   PMID:33961781   PMID:34079125   PMID:34373451   PMID:34432599   PMID:34597346   PMID:34672954   PMID:35831314  
PMID:35914814   PMID:36215168   PMID:37827155  


Genomics

Comparative Map Data
COG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,480,567 - 70,523,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,480,568 - 70,523,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,514,470 - 70,557,457 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,071,973 - 69,114,958 (-)NCBINCBI36Build 36hg18NCBI36
Build 341669,071,977 - 69,114,935NCBI
Celera1654,970,686 - 55,013,821 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,346,588 - 56,388,520 (-)NCBIHuRef
CHM1_11671,921,846 - 71,964,791 (-)NCBICHM1_1
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBIT2T-CHM13v2.0
Cog4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,573,232 - 111,608,866 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,573,232 - 111,608,859 (+)EnsemblGRCm39 Ensembl
GRCm388110,846,600 - 110,882,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,846,600 - 110,882,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv378113,370,924 - 113,406,134 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,733,724 - 113,768,902 (+)NCBIMGSCv36mm8
Celera8115,070,562 - 115,105,856 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.76NCBI
Cog4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,729,854 - 55,763,902 (+)NCBIGRCr8
mRatBN7.21938,820,478 - 38,854,803 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,820,501 - 38,854,796 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,625,539 - 45,658,998 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,278,907 - 46,312,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,589,673 - 48,623,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,358,057 - 43,391,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,358,057 - 43,391,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,191,116 - 54,224,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,769,219 - 40,803,409 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11940,774,043 - 40,808,258 (+)NCBI
Celera1938,214,041 - 38,247,592 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cog4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,279,302 - 3,307,543 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,278,624 - 3,307,580 (-)NCBIChiLan1.0ChiLan1.0
COG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21883,639,783 - 83,682,396 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11689,569,110 - 89,611,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,491,189 - 54,533,770 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,318,788 - 70,360,843 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,318,788 - 70,360,843 (-)Ensemblpanpan1.1panPan2
COG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,463,465 - 76,490,406 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,463,465 - 76,490,376 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,424,749 - 76,451,695 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,899,880 - 76,926,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,899,880 - 76,926,802 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,721,873 - 76,748,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,544,892 - 76,571,829 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,036,954 - 77,064,098 (-)NCBIUU_Cfam_GSD_1.0
Cog4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,472,911 - 36,502,714 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,086,372 - 23,119,163 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,086,406 - 23,116,203 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,490,116 - 13,524,452 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,492,876 - 13,524,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,635,045 - 53,673,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,635,485 - 53,673,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604716,431,232 - 16,471,696 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cog4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,715,437 - 12,747,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,715,437 - 12,747,187 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COG4
298 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_015386.3(COG4):c.844+2T>A single nucleotide variant not provided [RCV000520783] Chr16:70509914 [GRCh38]
Chr16:70543817 [GRCh37]
Chr16:16q22.1
pathogenic
NC_000016.10:g.(70426035_70473004)_(70512433_70519648)del deletion COG4-congenital disorder of glycosylation [RCV000003838] Chr16:70473004..70512433 [GRCh38]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.826C>T (p.Leu276Phe) single nucleotide variant not provided [RCV000519600] Chr16:70509934 [GRCh38]
Chr16:70543837 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2197C>T (p.Arg733Trp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000003837]|See cases [RCV002251866]|not provided [RCV001703413] Chr16:70481397 [GRCh38]
Chr16:70515300 [GRCh37]
Chr16:16q22.1
pathogenic|likely pathogenic
NM_015386.3(COG4):c.697G>T (p.Glu233Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000024608] Chr16:70512280 [GRCh38]
Chr16:70546183 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.2318T>G (p.Leu773Arg) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000024609] Chr16:70481062 [GRCh38]
Chr16:70514965 [GRCh37]
Chr16:16q22.1
pathogenic
GRCh38/hg38 16q22.1-24.3(chr16:70514631-90081985)x3 copy number gain See cases [RCV000052422] Chr16:70514631..90081985 [GRCh38]
Chr16:70548534..90148393 [GRCh37]
Chr16:69106035..88675894 [NCBI36]
Chr16:16q22.1-24.3
pathogenic
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2
pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1
pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3
pathogenic
GRCh38/hg38 16q22.1-23.1(chr16:69918076-76723348)x1 copy number loss See cases [RCV000053356] Chr16:69918076..76723348 [GRCh38]
Chr16:69951979..76757245 [GRCh37]
Chr16:68509480..75314746 [NCBI36]
Chr16:16q22.1-23.1
pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1
pathogenic
GRCh38/hg38 16q22.1-23.1(chr16:68698941-74353205)x1 copy number loss See cases [RCV000053337] Chr16:68698941..74353205 [GRCh38]
Chr16:68732844..74387103 [GRCh37]
Chr16:67290345..72944604 [NCBI36]
Chr16:16q22.1-23.1
pathogenic
NM_015386.3(COG4):c.1210C>A (p.Leu404Met) single nucleotide variant not provided [RCV000081728] Chr16:70498041 [GRCh38]
Chr16:70531944 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.171+18T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV001515445]|not specified [RCV000081729] Chr16:70523355 [GRCh38]
Chr16:70557258 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1759C>A (p.Gln587Lys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001080956]|not provided [RCV000432511]|not specified [RCV000081730] Chr16:70483921 [GRCh38]
Chr16:70517824 [GRCh37]
Chr16:16q22.1
benign|likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_015386.3(COG4):c.485C>T (p.Thr162Ile) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000989631]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001582570]|not specified [RCV000081731] Chr16:70514394 [GRCh38]
Chr16:70548297 [GRCh37]
Chr16:16q22.1
benign|conflicting interpretations of pathogenicity|conflicting data from submitters
NM_015386.3(COG4):c.592C>T (p.Arg198Cys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000865334]|not provided [RCV001575382]|not specified [RCV000081732] Chr16:70512385 [GRCh38]
Chr16:70546288 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.646C>T (p.Leu216=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001520815]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001582571]|not specified [RCV000081733] Chr16:70512331 [GRCh38]
Chr16:70546234 [GRCh37]
Chr16:16q22.1
benign|conflicting interpretations of pathogenicity|conflicting data from submitters
NM_015386.3(COG4):c.2142G>A (p.Ser714=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001510538]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001582583]|not specified [RCV000116788] Chr16:70481452 [GRCh38]
Chr16:70515355 [GRCh37]
Chr16:16q22.1
benign|likely benign|conflicting interpretations of pathogenicity
NM_015386.3(COG4):c.529C>T (p.Arg177Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000190572]|not provided [RCV003137769] Chr16:70514350 [GRCh38]
Chr16:70548253 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.1358G>T (p.Ser453Ile) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001348791] Chr16:70497344 [GRCh38]
Chr16:70531247 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh38/hg38 16q22.1-24.1(chr16:70414573-84908120)x1 copy number loss See cases [RCV000133814] Chr16:70414573..84908120 [GRCh38]
Chr16:70448476..84941726 [GRCh37]
Chr16:69005977..83499227 [NCBI36]
Chr16:16q22.1-24.1
pathogenic
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1
pathogenic
GRCh38/hg38 16q22.1-22.2(chr16:69918076-71541872)x3 copy number gain See cases [RCV000137875] Chr16:69918076..71541872 [GRCh38]
Chr16:69951979..71575775 [GRCh37]
Chr16:68509480..70133276 [NCBI36]
Chr16:16q22.1-22.2
uncertain significance
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3
pathogenic
GRCh38/hg38 16q22.1-23.3(chr16:69053457-83274681)x3 copy number gain See cases [RCV000142038] Chr16:69053457..83274681 [GRCh38]
Chr16:69087360..83308286 [GRCh37]
Chr16:67644861..81865787 [NCBI36]
Chr16:16q22.1-23.3
pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3
pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3
pathogenic
GRCh38/hg38 16q21-23.3(chr16:65957829-83611443)x3 copy number gain See cases [RCV000143742] Chr16:65957829..83611443 [GRCh38]
Chr16:65991732..83645048 [GRCh37]
Chr16:64549233..82202549 [NCBI36]
Chr16:16q21-23.3
pathogenic
NM_015386.3(COG4):c.2310C>G (p.Arg770=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001078970]|not provided [RCV000175467] Chr16:70481070 [GRCh38]
Chr16:70514973 [GRCh37]
Chr16:16q22.1
benign|conflicting interpretations of pathogenicity|uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3
uncertain significance
GRCh37/hg19 16q12.2-22.2(chr16:55359026-70884455)x1 copy number loss Breast ductal adenocarcinoma [RCV000207067] Chr16:55359026..70884455 [GRCh37]
Chr16:16q12.2-22.2
likely pathogenic|uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3
uncertain significance
NM_015386.3(COG4):c.763C>T (p.Leu255=) single nucleotide variant not specified [RCV000604925] Chr16:70509997 [GRCh38]
Chr16:70543900 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1074C>T (p.Pro358=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000877476]|not specified [RCV000606145] Chr16:70501079 [GRCh38]
Chr16:70534982 [GRCh37]
Chr16:16q22.1
benign|likely benign
NM_015386.3(COG4):c.387C>A (p.Ala129=) single nucleotide variant Congenital disorder of glycosylation [RCV000282473] Chr16:70514492 [GRCh38]
Chr16:70548395 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.*85T>G single nucleotide variant not provided [RCV001609429] Chr16:70480925 [GRCh38]
Chr16:70514828 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.59C>T (p.Pro20Leu) single nucleotide variant not provided [RCV003318796] Chr16:70523485 [GRCh38]
Chr16:70557388 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1195+8C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV000526451]|COG4-related condition [RCV003920358]|not specified [RCV000444100] Chr16:70500950 [GRCh38]
Chr16:70534853 [GRCh37]
Chr16:16q22.1
benign|likely benign
NM_015386.3(COG4):c.2272G>A (p.Gly758Ser) single nucleotide variant Congenital disorder of glycosylation [RCV000291393] Chr16:70481108 [GRCh38]
Chr16:70515011 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.513G>A (p.Ser171=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001423297] Chr16:70514366 [GRCh38]
Chr16:70548269 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.2004+11G>C single nucleotide variant Congenital disorder of glycosylation [RCV000299776] Chr16:70482081 [GRCh38]
Chr16:70515984 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.739-9C>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV000576250]|COG4-related condition [RCV003972367]|not specified [RCV000424543] Chr16:70510030 [GRCh38]
Chr16:70543933 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.*407T>G single nucleotide variant Congenital disorder of glycosylation [RCV000322799] Chr16:70480603 [GRCh38]
Chr16:70514506 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2067C>T (p.Val689=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002056506] Chr16:70481803 [GRCh38]
Chr16:70515706 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.*61G>A single nucleotide variant Congenital disorder of glycosylation [RCV000326428] Chr16:70480949 [GRCh38]
Chr16:70514852 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2271C>T (p.Ser757=) single nucleotide variant Congenital disorder of glycosylation [RCV000348627] Chr16:70481109 [GRCh38]
Chr16:70515012 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1481+11C>T single nucleotide variant Congenital disorder of glycosylation [RCV000306644] Chr16:70497210 [GRCh38]
Chr16:70531113 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1017G>A (p.Gln339=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001084920]|not provided [RCV000834202] Chr16:70508450 [GRCh38]
Chr16:70542353 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.*156C>G single nucleotide variant Congenital disorder of glycosylation [RCV000379693] Chr16:70480854 [GRCh38]
Chr16:70514757 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2278T>C (p.Leu760=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000873110]|not specified [RCV000602866] Chr16:70481102 [GRCh38]
Chr16:70515005 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.1481+12T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV002137193] Chr16:70497209 [GRCh38]
Chr16:70531112 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.1605A>C (p.Thr535=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001516934]|not specified [RCV000423875] Chr16:70496308 [GRCh38]
Chr16:70530211 [GRCh37]
Chr16:16q22.1
benign|likely benign|uncertain significance
NM_015386.3(COG4):c.1827+12G>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV002056507]|not specified [RCV000437221] Chr16:70483841 [GRCh38]
Chr16:70517744 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.2163G>A (p.Thr721=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000865333]|not specified [RCV000615630] Chr16:70481431 [GRCh38]
Chr16:70515334 [GRCh37]
Chr16:16q22.1
benign|uncertain significance
NM_015386.3(COG4):c.171+3G>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV000910716]|COG4-related condition [RCV003950089] Chr16:70523370 [GRCh38]
Chr16:70557273 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.825A>G (p.Thr275=) single nucleotide variant not provided [RCV000298220] Chr16:70509935 [GRCh38]
Chr16:70543838 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2288G>A (p.Arg763His) single nucleotide variant Inborn genetic diseases [RCV003243050]|not provided [RCV000406294] Chr16:70481092 [GRCh38]
Chr16:70514995 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1558G>A (p.Ala520Thr) single nucleotide variant not provided [RCV001269765] Chr16:70496355 [GRCh38]
Chr16:70530258 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.1631C>T (p.Ala544Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001364935]|Inborn genetic diseases [RCV003343779] Chr16:70496282 [GRCh38]
Chr16:70530185 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1269A>G (p.Leu423=) single nucleotide variant Congenital disorder of glycosylation [RCV000363632] Chr16:70497982 [GRCh38]
Chr16:70531885 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2146A>G (p.Ile716Val) single nucleotide variant Congenital disorder of glycosylation [RCV000294992] Chr16:70481448 [GRCh38]
Chr16:70515351 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.591A>G (p.Gln197=) single nucleotide variant Congenital disorder of glycosylation [RCV000389024] Chr16:70512386 [GRCh38]
Chr16:70546289 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.18G>C (p.Ala6=) single nucleotide variant not specified [RCV000604108] Chr16:70523526 [GRCh38]
Chr16:70557429 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.388A>G (p.Ile130Val) single nucleotide variant Congenital disorder of glycosylation [RCV000374681] Chr16:70514491 [GRCh38]
Chr16:70548394 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.129G>A (p.Leu43=) single nucleotide variant Congenital disorder of glycosylation [RCV000394177] Chr16:70523415 [GRCh38]
Chr16:70557318 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1546G>A (p.Gly516Arg) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000625979]|Inborn genetic diseases [RCV001266583]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV000710020]|not provided [RCV000522988] Chr16:70496367 [GRCh38]
Chr16:70530270 [GRCh37]
Chr16:16q22.1
pathogenic|uncertain significance
NM_015386.3(COG4):c.254+7C>T single nucleotide variant not specified [RCV000601531] Chr16:70519642 [GRCh38]
Chr16:70553545 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.73G>T (p.Gly25Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001169885] Chr16:70523471 [GRCh38]
Chr16:70557374 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.2286_2299del (p.Trp762fs) deletion not provided [RCV000656293] Chr16:70481081..70481094 [GRCh38]
Chr16:70514984..70514997 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2034C>A (p.Ser678Arg) single nucleotide variant not specified [RCV000414413] Chr16:70481836 [GRCh38]
Chr16:70515739 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.558T>C (p.Asp186=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001501749]|COG4-related condition [RCV003922679]|not provided [RCV000416225]|not specified [RCV000605001] Chr16:70512419 [GRCh38]
Chr16:70546322 [GRCh37]
Chr16:16q22.1
likely benign|conflicting interpretations of pathogenicity|uncertain significance
GRCh37/hg19 16q22.1(chr16:70024576-70673886)x3 copy number gain See cases [RCV000449413] Chr16:70024576..70673886 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3
pathogenic
GRCh37/hg19 16q22.1-22.2(chr16:70273406-70960990)x3 copy number gain See cases [RCV000446624] Chr16:70273406..70960990 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_015386.3(COG4):c.845-12C>G single nucleotide variant not specified [RCV000424033] Chr16:70509400 [GRCh38]
Chr16:70543303 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.*7G>C single nucleotide variant COG4-related condition [RCV003959988]|not specified [RCV000424041] Chr16:70481003 [GRCh38]
Chr16:70514906 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1560C>T (p.Ala520=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000872133]|not specified [RCV000437906] Chr16:70496353 [GRCh38]
Chr16:70530256 [GRCh37]
Chr16:16q22.1
benign|likely benign
NM_015386.3(COG4):c.2225A>G (p.Asn742Ser) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000554254]|Inborn genetic diseases [RCV003243130]|not provided [RCV000434619] Chr16:70481369 [GRCh38]
Chr16:70515272 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2348A>G (p.Asp783Gly) single nucleotide variant not provided [RCV000424348] Chr16:70481032 [GRCh38]
Chr16:70514935 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.369+13G>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV003502524]|not specified [RCV000427898] Chr16:70517613 [GRCh38]
Chr16:70551516 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1710+17C>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV001523629]|not specified [RCV000421236] Chr16:70490313 [GRCh38]
Chr16:70524216 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.845-18T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV001521026]|COG4-congenital disorder of glycosylation [RCV002502499]|not specified [RCV000439055] Chr16:70509406 [GRCh38]
Chr16:70543309 [GRCh37]
Chr16:16q22.1
benign|likely benign
NM_015386.3(COG4):c.544+19T>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV001517236]|not specified [RCV000422032] Chr16:70514316 [GRCh38]
Chr16:70548219 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2236-16A>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV001523062]|not specified [RCV000425514] Chr16:70481160 [GRCh38]
Chr16:70515063 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1710+14T>C single nucleotide variant not specified [RCV000429842] Chr16:70490316 [GRCh38]
Chr16:70524219 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.897G>A (p.Gly299=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000865166]|COG4-related condition [RCV003902538]|not specified [RCV000427119] Chr16:70509336 [GRCh38]
Chr16:70543239 [GRCh37]
Chr16:16q22.1
benign|likely benign
NM_015386.3(COG4):c.1167C>T (p.Asp389=) single nucleotide variant not provided [RCV000920668]|not specified [RCV000430765] Chr16:70500986 [GRCh38]
Chr16:70534889 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.797G>A (p.Arg266Gln) single nucleotide variant not provided [RCV000479737] Chr16:70509963 [GRCh38]
Chr16:70543866 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1795G>A (p.Ala599Thr) single nucleotide variant not provided [RCV000485449] Chr16:70483885 [GRCh38]
Chr16:70517788 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1809del (p.Lys603fs) deletion not provided [RCV000479342] Chr16:70483871 [GRCh38]
Chr16:70517774 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.2236-17dup duplication not specified [RCV000478410] Chr16:70481160..70481161 [GRCh38]
Chr16:70515063..70515064 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1482-8dup duplication not specified [RCV000483046] Chr16:70496433..70496434 [GRCh38]
Chr16:70530336..70530337 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.14T>C (p.Met5Thr) single nucleotide variant Inborn genetic diseases [RCV003352894]|not provided [RCV000497468] Chr16:70523530 [GRCh38]
Chr16:70557433 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1482-3C>G single nucleotide variant not provided [RCV000498008] Chr16:70496434 [GRCh38]
Chr16:70530337 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1415G>A (p.Ser472Asn) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001856979]|not provided [RCV000493650] Chr16:70497287 [GRCh38]
Chr16:70531190 [GRCh37]
Chr16:16q22.1
likely pathogenic|uncertain significance
NM_015386.3(COG4):c.1948G>A (p.Asp650Asn) single nucleotide variant not provided [RCV000494016] Chr16:70482148 [GRCh38]
Chr16:70516051 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3
uncertain significance
NM_015386.3(COG4):c.599A>G (p.Lys200Arg) single nucleotide variant Inborn genetic diseases [RCV002524043]|not provided [RCV000493288] Chr16:70512378 [GRCh38]
Chr16:70546281 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
NM_015386.3(COG4):c.518T>C (p.Ile173Thr) single nucleotide variant not provided [RCV000598076] Chr16:70514361 [GRCh38]
Chr16:70548264 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1828-10C>A single nucleotide variant not specified [RCV000601069] Chr16:70482831 [GRCh38]
Chr16:70516734 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1005C>T (p.Phe335=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000537674]|COG4-related condition [RCV003960359]|not provided [RCV003424130] Chr16:70508462 [GRCh38]
Chr16:70542365 [GRCh37]
Chr16:16q22.1
likely benign
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_015386.3(COG4):c.1654_1655del (p.Leu552fs) microsatellite not provided [RCV000627449] Chr16:70490385..70490386 [GRCh38]
Chr16:70524288..70524289 [GRCh37]
Chr16:16q22.1
likely pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_015386.3(COG4):c.409T>C (p.Leu137=) single nucleotide variant not specified [RCV000615348] Chr16:70514470 [GRCh38]
Chr16:70548373 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1053C>T (p.Ile351=) single nucleotide variant not specified [RCV000610357] Chr16:70508414 [GRCh38]
Chr16:70542317 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2019G>A (p.Pro673=) single nucleotide variant not specified [RCV000602382] Chr16:70481851 [GRCh38]
Chr16:70515754 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2005G>C (p.Ala669Pro) single nucleotide variant not provided [RCV000656292] Chr16:70481865 [GRCh38]
Chr16:70515768 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.1947C>T (p.Asn649=) single nucleotide variant not specified [RCV000607977] Chr16:70482149 [GRCh38]
Chr16:70516052 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.94A>G (p.Ile32Val) single nucleotide variant Inborn genetic diseases [RCV003276068] Chr16:70523450 [GRCh38]
Chr16:70557353 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3
pathogenic
NM_015386.3(COG4):c.18G>A (p.Ala6=) single nucleotide variant not specified [RCV000607753] Chr16:70523526 [GRCh38]
Chr16:70557429 [GRCh37]
Chr16:16q22.1
likely benign
GRCh37/hg19 16q12.2-22.2(chr16:54416050-72453266)x3 copy number gain not provided [RCV000683820] Chr16:54416050..72453266 [GRCh37]
Chr16:16q12.2-22.2
pathogenic
NM_015386.3(COG4):c.1546G>C (p.Gly516Arg) single nucleotide variant Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV000710021] Chr16:70496367 [GRCh38]
Chr16:70530270 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.1472C>G (p.Ser491Cys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000707296] Chr16:70497230 [GRCh38]
Chr16:70531133 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.6del (p.Thr3fs) deletion COG4-congenital disorder of glycosylation [RCV000692575] Chr16:70523538 [GRCh38]
Chr16:70557441 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.1894T>C (p.Phe632Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000690572] Chr16:70482755 [GRCh38]
Chr16:70516658 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.539A>G (p.Lys180Arg) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000706177]|Inborn genetic diseases [RCV002534458]|not provided [RCV003420262] Chr16:70514340 [GRCh38]
Chr16:70548243 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.1002+51C>T single nucleotide variant not provided [RCV001546155] Chr16:70509180 [GRCh38]
Chr16:70543083 [GRCh37]
Chr16:16q22.1
likely benign
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_015386.3(COG4):c.369+36_369+38del deletion not provided [RCV001581687] Chr16:70517588..70517590 [GRCh38]
Chr16:70551491..70551493 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.255-209dup duplication not provided [RCV001611602] Chr16:70517937..70517938 [GRCh38]
Chr16:70551840..70551841 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.172-268C>T single nucleotide variant not provided [RCV001645426] Chr16:70519999 [GRCh38]
Chr16:70553902 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1840G>T (p.Glu614Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002499389]|COG4-congenital disorder of glycosylation [RCV003609168]|Delayed gross motor development [RCV000782124]|not provided [RCV000760680] Chr16:70482809 [GRCh38]
Chr16:70516712 [GRCh37]
Chr16:16q22.1
pathogenic|no classifications from unflagged records
GRCh37/hg19 16q22.1(chr16:70471827-70515915)x1 copy number loss not provided [RCV000751731] Chr16:70471827..70515915 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2030A>G (p.Asp677Gly) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000983800]|COG4-related condition [RCV003906115]|not provided [RCV001569338] Chr16:70481840 [GRCh38]
Chr16:70515743 [GRCh37]
Chr16:16q22.1
benign|likely benign|uncertain significance
NM_015386.3(COG4):c.123A>G (p.Thr41=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001397164] Chr16:70523421 [GRCh38]
Chr16:70557324 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.682C>T (p.Leu228=) single nucleotide variant not provided [RCV000926056] Chr16:70512295 [GRCh38]
Chr16:70546198 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1927T>C (p.Phe643Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000892924] Chr16:70482169 [GRCh38]
Chr16:70516072 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2343T>C (p.Ser781=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000921710] Chr16:70481037 [GRCh38]
Chr16:70514940 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2251G>A (p.Asp751Asn) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000870990] Chr16:70481129 [GRCh38]
Chr16:70515032 [GRCh37]
Chr16:16q22.1
likely benign|conflicting interpretations of pathogenicity
NM_015386.3(COG4):c.1921-9T>C single nucleotide variant not provided [RCV000970656] Chr16:70482184 [GRCh38]
Chr16:70516087 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1839G>A (p.Thr613=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002545976] Chr16:70482810 [GRCh38]
Chr16:70516713 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1077C>A (p.Ile359=) single nucleotide variant not provided [RCV000902629] Chr16:70501076 [GRCh38]
Chr16:70534979 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2106+1G>A single nucleotide variant Congenital disorder of glycosylation [RCV000779198] Chr16:70481763 [GRCh38]
Chr16:70515666 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.644A>G (p.Asp215Gly) single nucleotide variant Inborn genetic diseases [RCV003247950] Chr16:70512333 [GRCh38]
Chr16:70546236 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1647+20C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002538306]|not provided [RCV000841288] Chr16:70496246 [GRCh38]
Chr16:70530149 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1141A>G (p.Ile381Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000823155] Chr16:70501012 [GRCh38]
Chr16:70534915 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1314+14C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002538262]|not provided [RCV000827604] Chr16:70497923 [GRCh38]
Chr16:70531826 [GRCh37]
Chr16:16q22.1
likely benign
NC_000016.9:g.(?_70286614)_(70669268_?)dup duplication Charcot-Marie-Tooth disease type 2 [RCV000813323] Chr16:70252711..70635365 [GRCh38]
Chr16:70286614..70669268 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1798G>A (p.Val600Met) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000824114] Chr16:70483882 [GRCh38]
Chr16:70517785 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1(chr16:70393149-70798654)x3 copy number gain not provided [RCV000847423] Chr16:70393149..70798654 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.2(chr16:70467293-71560136)x3 copy number gain not provided [RCV000848000] Chr16:70467293..71560136 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
NM_015386.3(COG4):c.1106G>A (p.Arg369His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000822482] Chr16:70501047 [GRCh38]
Chr16:70534950 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1314+86A>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV000989630]|not provided [RCV001712845] Chr16:70497851 [GRCh38]
Chr16:70531754 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2083G>T (p.Val695Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000811610] Chr16:70481787 [GRCh38]
Chr16:70515690 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.2(chr16:70277618-70917102)x4 copy number gain not provided [RCV000845716] Chr16:70277618..70917102 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
GRCh37/hg19 16q22.1(chr16:70493170-70531886)x1 copy number loss not provided [RCV000849308] Chr16:70493170..70531886 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q21-24.3(chr16:61524229-90155062)x3 copy number gain not provided [RCV001249359] Chr16:61524229..90155062 [GRCh37]
Chr16:16q21-24.3
not provided
NM_015386.3(COG4):c.1542G>T (p.Gln514His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001197925] Chr16:70496371 [GRCh38]
Chr16:70530274 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.252G>A (p.Met84Ile) single nucleotide variant Inborn genetic diseases [RCV003245827] Chr16:70519651 [GRCh38]
Chr16:70553554 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1061+75G>C single nucleotide variant not provided [RCV001572054] Chr16:70508331 [GRCh38]
Chr16:70542234 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.266_267inv (p.Gln89Pro) inversion not provided [RCV001569241] Chr16:70517728..70517729 [GRCh38]
Chr16:70551631..70551632 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1921-80C>T single nucleotide variant not provided [RCV001548096] Chr16:70482255 [GRCh38]
Chr16:70516158 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.369+15_369+16dup duplication not provided [RCV001554890] Chr16:70517587..70517588 [GRCh38]
Chr16:70551490..70551491 [GRCh37]
Chr16:16q22.1
likely benign
NC_000016.10:g.70523638_70523639dup duplication not provided [RCV001715661] Chr16:70523627..70523628 [GRCh38]
Chr16:70557530..70557531 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.171+63G>C single nucleotide variant not provided [RCV001555161] Chr16:70523310 [GRCh38]
Chr16:70557213 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1648-144G>A single nucleotide variant not provided [RCV001588765] Chr16:70490536 [GRCh38]
Chr16:70524439 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.369+15dup duplication not provided [RCV001618192] Chr16:70517587..70517588 [GRCh38]
Chr16:70551490..70551491 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2106+67A>C single nucleotide variant not provided [RCV001680013] Chr16:70481697 [GRCh38]
Chr16:70515600 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1921-150G>C single nucleotide variant not provided [RCV001692939] Chr16:70482325 [GRCh38]
Chr16:70516228 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.369+245T>C single nucleotide variant not provided [RCV001696416] Chr16:70517381 [GRCh38]
Chr16:70551284 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1920+154A>G single nucleotide variant not provided [RCV001667617] Chr16:70482575 [GRCh38]
Chr16:70516478 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.882G>A (p.Val294=) single nucleotide variant not provided [RCV000908002] Chr16:70509351 [GRCh38]
Chr16:70543254 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1072C>A (p.Pro358Thr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV000939062] Chr16:70501081 [GRCh38]
Chr16:70534984 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.33T>C (p.Pro11=) single nucleotide variant not provided [RCV000897165] Chr16:70523511 [GRCh38]
Chr16:70557414 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.150C>T (p.Tyr50=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002066000] Chr16:70523394 [GRCh38]
Chr16:70557297 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.369+1_369+2del deletion COG4-congenital disorder of glycosylation [RCV001247888] Chr16:70517624..70517625 [GRCh38]
Chr16:70551527..70551528 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.383A>G (p.Gln128Arg) single nucleotide variant not provided [RCV003230050] Chr16:70514496 [GRCh38]
Chr16:70548399 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1003-30G>C single nucleotide variant not provided [RCV001598240] Chr16:70508494 [GRCh38]
Chr16:70542397 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1711-329C>G single nucleotide variant not provided [RCV001553376] Chr16:70484298 [GRCh38]
Chr16:70518201 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.254+170C>G single nucleotide variant not provided [RCV001689125] Chr16:70519479 [GRCh38]
Chr16:70553382 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.978C>G (p.Ile326Met) single nucleotide variant not provided [RCV003237133] Chr16:70509255 [GRCh38]
Chr16:70543158 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1647+49A>G single nucleotide variant not provided [RCV001659020] Chr16:70496217 [GRCh38]
Chr16:70530120 [GRCh37]
Chr16:16q22.1
likely benign
GRCh37/hg19 16q22.1(chr16:70510947-70623900)x1 copy number loss not provided [RCV002473710] Chr16:70510947..70623900 [GRCh37]
Chr16:16q22.1
uncertain significance
NC_000016.10:g.70523637_70523639dup duplication not provided [RCV001674720] Chr16:70523627..70523628 [GRCh38]
Chr16:70557530..70557531 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1900G>A (p.Val634Ile) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002573342]|not provided [RCV001593718] Chr16:70482749 [GRCh38]
Chr16:70516652 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1002+23A>G single nucleotide variant not provided [RCV001717041] Chr16:70509208 [GRCh38]
Chr16:70543111 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1482-50G>A single nucleotide variant not provided [RCV001637315] Chr16:70496481 [GRCh38]
Chr16:70530384 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.171+161C>A single nucleotide variant not provided [RCV001656353] Chr16:70523212 [GRCh38]
Chr16:70557115 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1196-217_1196-216del deletion not provided [RCV001715032] Chr16:70498271..70498272 [GRCh38]
Chr16:70532174..70532175 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1195+275T>A single nucleotide variant not provided [RCV001581873] Chr16:70500683 [GRCh38]
Chr16:70534586 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.369+38del deletion not provided [RCV001652548] Chr16:70517588 [GRCh38]
Chr16:70551491 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.255-229A>G single nucleotide variant not provided [RCV001719630] Chr16:70517969 [GRCh38]
Chr16:70551872 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.255-324C>A single nucleotide variant not provided [RCV001620769] Chr16:70518064 [GRCh38]
Chr16:70551967 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1921-31C>T single nucleotide variant not provided [RCV001715659] Chr16:70482206 [GRCh38]
Chr16:70516109 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1315-76G>A single nucleotide variant not provided [RCV001718543] Chr16:70497463 [GRCh38]
Chr16:70531366 [GRCh37]
Chr16:16q22.1
benign
NC_000016.10:g.70523639dup duplication not provided [RCV001641136] Chr16:70523627..70523628 [GRCh38]
Chr16:70557530..70557531 [GRCh37]
Chr16:16q22.1
benign
GRCh37/hg19 16q22.1(chr16:70381448-70627356)x3 copy number gain not provided [RCV001006799] Chr16:70381448..70627356 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.599_600del (p.Lys200fs) deletion COG4-congenital disorder of glycosylation [RCV001069760] Chr16:70512377..70512378 [GRCh38]
Chr16:70546280..70546281 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.370-175T>C single nucleotide variant not provided [RCV001684217] Chr16:70514684 [GRCh38]
Chr16:70548587 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.738+208_738+209insT insertion not provided [RCV001615787] Chr16:70512030..70512031 [GRCh38]
Chr16:70545933..70545934 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.941G>A (p.Cys314Tyr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001647344] Chr16:70509292 [GRCh38]
Chr16:70543195 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.845-88C>T single nucleotide variant not provided [RCV001585335] Chr16:70509476 [GRCh38]
Chr16:70543379 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.545-61G>A single nucleotide variant not provided [RCV001713268] Chr16:70512493 [GRCh38]
Chr16:70546396 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.369+37_369+38del deletion not provided [RCV001534220] Chr16:70517588..70517589 [GRCh38]
Chr16:70551491..70551492 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1255G>T (p.Glu419Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001647345] Chr16:70497996 [GRCh38]
Chr16:70531899 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.1920+255_1920+260del deletion not provided [RCV001641024] Chr16:70482469..70482474 [GRCh38]
Chr16:70516372..70516377 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1482-213C>T single nucleotide variant not provided [RCV001684730] Chr16:70496644 [GRCh38]
Chr16:70530547 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.369+60A>G single nucleotide variant not provided [RCV001714357] Chr16:70517566 [GRCh38]
Chr16:70551469 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.370-123G>A single nucleotide variant not provided [RCV001714358] Chr16:70514632 [GRCh38]
Chr16:70548535 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1827+115C>T single nucleotide variant not provided [RCV001714272] Chr16:70483738 [GRCh38]
Chr16:70517641 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1403G>A (p.Arg468Gln) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001866224]|COG4-related condition [RCV003416403]|not provided [RCV001588399] Chr16:70497299 [GRCh38]
Chr16:70531202 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.83G>T (p.Arg28Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001231594] Chr16:70523461 [GRCh38]
Chr16:70557364 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1128C>A (p.Phe376Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001061564] Chr16:70501025 [GRCh38]
Chr16:70534928 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.248G>A (p.Arg83Gln) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001059377] Chr16:70519655 [GRCh38]
Chr16:70553558 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1208G>A (p.Cys403Tyr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001229684] Chr16:70498043 [GRCh38]
Chr16:70531946 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.495C>G (p.Tyr165Ter) single nucleotide variant Congenital disorder of glycosylation type 2J [RCV001333862] Chr16:70514384 [GRCh38]
Chr16:70548287 [GRCh37]
Chr16:16q22.1
pathogenic
GRCh37/hg19 16q22.1-23.1(chr16:68971067-74823560)x1 copy number loss See cases [RCV002285074] Chr16:68971067..74823560 [GRCh37]
Chr16:16q22.1-23.1
pathogenic
NM_015386.3(COG4):c.1123C>T (p.Arg375Cys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001306981] Chr16:70501030 [GRCh38]
Chr16:70534933 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NC_000016.9:g.(?_70286614)_(70669268_?)dup duplication Charcot-Marie-Tooth disease, type 2 [RCV001304386] Chr16:70286614..70669268 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2041G>A (p.Gly681Ser) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001338292] Chr16:70481829 [GRCh38]
Chr16:70515732 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.751G>A (p.Ala251Thr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001360257] Chr16:70510009 [GRCh38]
Chr16:70543912 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.373C>T (p.Arg125Cys) single nucleotide variant Inborn genetic diseases [RCV002551587]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001391661] Chr16:70514506 [GRCh38]
Chr16:70548409 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1931A>G (p.Asn644Ser) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001299161]|not provided [RCV002307722] Chr16:70482165 [GRCh38]
Chr16:70516068 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.101C>T (p.Ala34Val) single nucleotide variant Global developmental delay [RCV001281527] Chr16:70523443 [GRCh38]
Chr16:70557346 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2141C>G (p.Ser714Trp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001315117] Chr16:70481453 [GRCh38]
Chr16:70515356 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1309A>G (p.Asn437Asp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001317318]|Inborn genetic diseases [RCV002543722] Chr16:70497942 [GRCh38]
Chr16:70531845 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1632G>A (p.Ala544=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001428762] Chr16:70496281 [GRCh38]
Chr16:70530184 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1711-10T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV001437436] Chr16:70483979 [GRCh38]
Chr16:70517882 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2268T>C (p.Asn756=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001430696] Chr16:70481112 [GRCh38]
Chr16:70515015 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.339C>T (p.Ser113=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001394222] Chr16:70517656 [GRCh38]
Chr16:70551559 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1061+149A>C single nucleotide variant not provided [RCV001717055] Chr16:70508257 [GRCh38]
Chr16:70542160 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1397T>C (p.Ile466Thr) single nucleotide variant not provided [RCV001508413] Chr16:70497305 [GRCh38]
Chr16:70531208 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1536C>T (p.Asp512=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001461561] Chr16:70496377 [GRCh38]
Chr16:70530280 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.171+10C>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV001479351] Chr16:70523363 [GRCh38]
Chr16:70557266 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.317G>A (p.Cys106Tyr) single nucleotide variant not provided [RCV001587705] Chr16:70517678 [GRCh38]
Chr16:70551581 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1482-25T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV001581181]|Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001581182]|not provided [RCV001536997] Chr16:70496456 [GRCh38]
Chr16:70530359 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1196-123T>C single nucleotide variant not provided [RCV001779766] Chr16:70498178 [GRCh38]
Chr16:70532081 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.369+213G>T single nucleotide variant not provided [RCV001762902] Chr16:70517413 [GRCh38]
Chr16:70551316 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.1468G>A (p.Glu490Lys) single nucleotide variant not provided [RCV001767578] Chr16:70497234 [GRCh38]
Chr16:70531137 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2084T>C (p.Val695Ala) single nucleotide variant not provided [RCV003238011] Chr16:70481786 [GRCh38]
Chr16:70515689 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.490C>T (p.Arg164Cys) single nucleotide variant Microcephalic osteodysplastic dysplasia, Saul-Wilson type [RCV001787305]|not provided [RCV003487784] Chr16:70514389 [GRCh38]
Chr16:70548292 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1314+38C>T single nucleotide variant not provided [RCV001779912] Chr16:70497899 [GRCh38]
Chr16:70531802 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1920+242C>T single nucleotide variant not provided [RCV001762903] Chr16:70482487 [GRCh38]
Chr16:70516390 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.369+182A>T single nucleotide variant not provided [RCV001762901] Chr16:70517444 [GRCh38]
Chr16:70551347 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2216C>T (p.Thr739Ile) single nucleotide variant not provided [RCV001765439] Chr16:70481378 [GRCh38]
Chr16:70515281 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1517C>T (p.Pro506Leu) single nucleotide variant not provided [RCV001774496] Chr16:70496396 [GRCh38]
Chr16:70530299 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.544+40T>C single nucleotide variant not provided [RCV001779600] Chr16:70514295 [GRCh38]
Chr16:70548198 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.200T>G (p.Leu67Arg) single nucleotide variant not provided [RCV001758277] Chr16:70519703 [GRCh38]
Chr16:70553606 [GRCh37]
Chr16:16q22.1
uncertain significance
NC_000016.9:g.(?_69680960)_(72146396_?)dup duplication Immunodeficiency [RCV001950695] Chr16:69680960..72146396 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
NM_015386.3(COG4):c.379T>C (p.Tyr127His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002005718] Chr16:70514500 [GRCh38]
Chr16:70548403 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.2(chr16:70273406-70960990) copy number gain not specified [RCV002052535] Chr16:70273406..70960990 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
NM_015386.3(COG4):c.349C>T (p.Arg117Cys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002039654] Chr16:70517646 [GRCh38]
Chr16:70551549 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1838C>T (p.Thr613Met) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001895229] Chr16:70482811 [GRCh38]
Chr16:70516714 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.544+1G>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002021735] Chr16:70514334 [GRCh38]
Chr16:70548237 [GRCh37]
Chr16:16q22.1
likely pathogenic
NM_015386.3(COG4):c.1816G>C (p.Asp606His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002006602] Chr16:70483864 [GRCh38]
Chr16:70517767 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.2(chr16:70272361-70983737)x1 copy number loss not provided [RCV001834260] Chr16:70272361..70983737 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
NM_015386.3(COG4):c.2026T>C (p.Tyr676His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001837187] Chr16:70481844 [GRCh38]
Chr16:70515747 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.35C>T (p.Pro12Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001872546] Chr16:70523509 [GRCh38]
Chr16:70557412 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1202A>G (p.Gln401Arg) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001927787] Chr16:70498049 [GRCh38]
Chr16:70531952 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1(chr16:70024576-70673886) copy number gain not specified [RCV002052534] Chr16:70024576..70673886 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.883G>T (p.Glu295Ter) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001962877] Chr16:70509350 [GRCh38]
Chr16:70543253 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.1624G>T (p.Asp542Tyr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001961998] Chr16:70496289 [GRCh38]
Chr16:70530192 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.233T>C (p.Met78Thr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002038208] Chr16:70519670 [GRCh38]
Chr16:70553573 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1124G>A (p.Arg375His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001962076] Chr16:70501029 [GRCh38]
Chr16:70534932 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2114G>C (p.Gly705Ala) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001905089] Chr16:70481480 [GRCh38]
Chr16:70515383 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.151G>C (p.Glu51Gln) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001906568] Chr16:70523393 [GRCh38]
Chr16:70557296 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2358G>C (p.Arg786Ser) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001973343]|not provided [RCV003408030] Chr16:70481022 [GRCh38]
Chr16:70514925 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.593G>A (p.Arg198His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002049969]|Inborn genetic diseases [RCV002545296] Chr16:70512384 [GRCh38]
Chr16:70546287 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.863A>G (p.Glu288Gly) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002050331] Chr16:70509370 [GRCh38]
Chr16:70543273 [GRCh37]
Chr16:16q22.1
uncertain significance
NC_000016.9:g.(?_66545871)_(72146396_?)dup duplication Dyskeratosis congenita, autosomal dominant 6 [RCV001900384]|Immunodeficiency [RCV001900385]|not provided [RCV001900386] Chr16:66545871..72146396 [GRCh37]
Chr16:16q21-22.2
uncertain significance
NM_015386.3(COG4):c.1464G>T (p.Glu488Asp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001924629] Chr16:70497238 [GRCh38]
Chr16:70531141 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2104C>T (p.Arg702Trp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001876822] Chr16:70481766 [GRCh38]
Chr16:70515669 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.496T>G (p.Leu166Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001955283] Chr16:70514383 [GRCh38]
Chr16:70548286 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1482-7C>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV001916369] Chr16:70496438 [GRCh38]
Chr16:70530341 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1054G>A (p.Glu352Lys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001905810]|Inborn genetic diseases [RCV002552948] Chr16:70508413 [GRCh38]
Chr16:70542316 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1875G>T (p.Gln625His) single nucleotide variant COG4-congenital disorder of glycosylation [RCV001980776] Chr16:70482774 [GRCh38]
Chr16:70516677 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.172-14T>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV002092420] Chr16:70519745 [GRCh38]
Chr16:70553648 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1314+15G>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV002109856] Chr16:70497922 [GRCh38]
Chr16:70531825 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2107-18G>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV002174184] Chr16:70481505 [GRCh38]
Chr16:70515408 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1648-12C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002093571] Chr16:70490404 [GRCh38]
Chr16:70524307 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1648-9A>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV002093017] Chr16:70490401 [GRCh38]
Chr16:70524304 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2247C>A (p.Ile749=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002158978]|COG4-related condition [RCV003951290]|not provided [RCV002292688] Chr16:70481133 [GRCh38]
Chr16:70515036 [GRCh37]
Chr16:16q22.1
likely benign
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3
pathogenic
NM_015386.3(COG4):c.811A>G (p.Ile271Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002103843]|COG4-congenital disorder of glycosylation [RCV002486874] Chr16:70509949 [GRCh38]
Chr16:70543852 [GRCh37]
Chr16:16q22.1
likely benign
NC_000016.9:g.(?_70497094)_(70557446_?)dup duplication not provided [RCV003113656] Chr16:70497094..70557446 [GRCh37]
Chr16:16q22.1
uncertain significance
NC_000016.9:g.(?_70497094)_(70834803_?)dup duplication not provided [RCV003119866] Chr16:70497094..70834803 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
NC_000016.9:g.(?_65821800)_(72146396_?)del deletion Dyskeratosis congenita, autosomal dominant 6 [RCV003122496] Chr16:65821800..72146396 [GRCh37]
Chr16:16q21-22.2
uncertain significance
NM_015386.3(COG4):c.1169C>T (p.Ser390Phe) single nucleotide variant not provided [RCV003145084] Chr16:70500984 [GRCh38]
Chr16:70534887 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.793G>A (p.Asp265Asn) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003148376] Chr16:70509967 [GRCh38]
Chr16:70543870 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.727C>T (p.Leu243Phe) single nucleotide variant not provided [RCV002474245] Chr16:70512250 [GRCh38]
Chr16:70546153 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.844+1G>A single nucleotide variant not provided [RCV003156505] Chr16:70509915 [GRCh38]
Chr16:70543818 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.2095A>G (p.Thr699Ala) single nucleotide variant not provided [RCV002469554] Chr16:70481775 [GRCh38]
Chr16:70515678 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1948G>C (p.Asp650His) single nucleotide variant not provided [RCV002469653] Chr16:70482148 [GRCh38]
Chr16:70516051 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.536G>A (p.Gly179Asp) single nucleotide variant not provided [RCV002306380] Chr16:70514343 [GRCh38]
Chr16:70548246 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.854G>A (p.Arg285His) single nucleotide variant not provided [RCV002308990] Chr16:70509379 [GRCh38]
Chr16:70543282 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.853C>T (p.Arg285Cys) single nucleotide variant Inborn genetic diseases [RCV002993112] Chr16:70509380 [GRCh38]
Chr16:70543283 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2342G>A (p.Ser781Asn) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002681303] Chr16:70481038 [GRCh38]
Chr16:70514941 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1910A>T (p.Asn637Ile) single nucleotide variant Inborn genetic diseases [RCV002729279] Chr16:70482739 [GRCh38]
Chr16:70516642 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.773T>A (p.Val258Glu) single nucleotide variant Inborn genetic diseases [RCV002902581] Chr16:70509987 [GRCh38]
Chr16:70543890 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.530G>A (p.Arg177Gln) single nucleotide variant Inborn genetic diseases [RCV002771730] Chr16:70514349 [GRCh38]
Chr16:70548252 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.372C>T (p.Asn124=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002755058] Chr16:70514507 [GRCh38]
Chr16:70548410 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.661C>T (p.Arg221Cys) single nucleotide variant Inborn genetic diseases [RCV002682708] Chr16:70512316 [GRCh38]
Chr16:70546219 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2287C>T (p.Arg763Cys) single nucleotide variant Inborn genetic diseases [RCV002733146] Chr16:70481093 [GRCh38]
Chr16:70514996 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.41T>C (p.Leu14Pro) single nucleotide variant Inborn genetic diseases [RCV002689866] Chr16:70523503 [GRCh38]
Chr16:70557406 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2004G>A (p.Lys668=) single nucleotide variant Inborn genetic diseases [RCV002773399] Chr16:70482092 [GRCh38]
Chr16:70515995 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2293A>G (p.Thr765Ala) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002640653]|Inborn genetic diseases [RCV002625112] Chr16:70481087 [GRCh38]
Chr16:70514990 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.169G>A (p.Glu57Lys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002736771] Chr16:70523375 [GRCh38]
Chr16:70557278 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2150C>T (p.Ala717Val) single nucleotide variant Inborn genetic diseases [RCV002758825] Chr16:70481444 [GRCh38]
Chr16:70515347 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1961A>G (p.Gln654Arg) single nucleotide variant Inborn genetic diseases [RCV002845112] Chr16:70482135 [GRCh38]
Chr16:70516038 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2224A>G (p.Asn742Asp) single nucleotide variant Inborn genetic diseases [RCV002660347] Chr16:70481370 [GRCh38]
Chr16:70515273 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2081T>C (p.Val694Ala) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002979518] Chr16:70481789 [GRCh38]
Chr16:70515692 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2004+10G>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV002871080] Chr16:70482082 [GRCh38]
Chr16:70515985 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2282C>T (p.Thr761Met) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002756740] Chr16:70481098 [GRCh38]
Chr16:70515001 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.906A>T (p.Arg302Ser) single nucleotide variant Inborn genetic diseases [RCV002706863] Chr16:70509327 [GRCh38]
Chr16:70543230 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.355C>T (p.Leu119Phe) single nucleotide variant Inborn genetic diseases [RCV002822211] Chr16:70517640 [GRCh38]
Chr16:70551543 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.327T>C (p.Ala109=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002876812] Chr16:70517668 [GRCh38]
Chr16:70551571 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1978C>T (p.Leu660=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002871864] Chr16:70482118 [GRCh38]
Chr16:70516021 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.370-19G>A single nucleotide variant COG4-congenital disorder of glycosylation [RCV002624716] Chr16:70514528 [GRCh38]
Chr16:70548431 [GRCh37]
Chr16:16q22.1
benign
NM_015386.3(COG4):c.2308C>T (p.Arg770Cys) single nucleotide variant Inborn genetic diseases [RCV002713236] Chr16:70481072 [GRCh38]
Chr16:70514975 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.858T>G (p.Ile286Met) single nucleotide variant Inborn genetic diseases [RCV002804042] Chr16:70509375 [GRCh38]
Chr16:70543278 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.739-8T>C single nucleotide variant COG4-congenital disorder of glycosylation [RCV002876615] Chr16:70510029 [GRCh38]
Chr16:70543932 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1663G>A (p.Val555Met) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002894945]|not provided [RCV003883842] Chr16:70490377 [GRCh38]
Chr16:70524280 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2198G>A (p.Arg733Gln) single nucleotide variant Inborn genetic diseases [RCV002983272] Chr16:70481396 [GRCh38]
Chr16:70515299 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.68G>A (p.Gly23Glu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002982641] Chr16:70523476 [GRCh38]
Chr16:70557379 [GRCh37]
Chr16:16q22.1
likely benign|uncertain significance
NM_015386.3(COG4):c.1519G>A (p.Ala507Thr) single nucleotide variant Inborn genetic diseases [RCV002827601] Chr16:70496394 [GRCh38]
Chr16:70530297 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2120A>G (p.Gln707Arg) single nucleotide variant Inborn genetic diseases [RCV002850285] Chr16:70481474 [GRCh38]
Chr16:70515377 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.397G>A (p.Ala133Thr) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002932689] Chr16:70514482 [GRCh38]
Chr16:70548385 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1105C>T (p.Arg369Cys) single nucleotide variant Inborn genetic diseases [RCV002712292] Chr16:70501048 [GRCh38]
Chr16:70534951 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2236G>A (p.Val746Met) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003023614] Chr16:70481144 [GRCh38]
Chr16:70515047 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.370A>G (p.Asn124Asp) single nucleotide variant Inborn genetic diseases [RCV002767664] Chr16:70514509 [GRCh38]
Chr16:70548412 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.625A>G (p.Ile209Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002579119] Chr16:70512352 [GRCh38]
Chr16:70546255 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2363G>A (p.Arg788His) single nucleotide variant Inborn genetic diseases [RCV002702986] Chr16:70481017 [GRCh38]
Chr16:70514920 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.722A>G (p.Glu241Gly) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002648159] Chr16:70512255 [GRCh38]
Chr16:70546158 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1561G>A (p.Val521Met) single nucleotide variant Inborn genetic diseases [RCV002669134] Chr16:70496352 [GRCh38]
Chr16:70530255 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2029G>A (p.Asp677Asn) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003086735] Chr16:70481841 [GRCh38]
Chr16:70515744 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1142T>G (p.Ile381Ser) single nucleotide variant Inborn genetic diseases [RCV002896305] Chr16:70501011 [GRCh38]
Chr16:70534914 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1858A>G (p.Ile620Val) single nucleotide variant Inborn genetic diseases [RCV002722549] Chr16:70482791 [GRCh38]
Chr16:70516694 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1647+13C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002944129] Chr16:70496253 [GRCh38]
Chr16:70530156 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1950C>T (p.Asp650=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV002607340] Chr16:70482146 [GRCh38]
Chr16:70516049 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.796C>T (p.Arg266Trp) single nucleotide variant Inborn genetic diseases [RCV002677483] Chr16:70509964 [GRCh38]
Chr16:70543867 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.172-11C>T single nucleotide variant COG4-congenital disorder of glycosylation [RCV002612539] Chr16:70519742 [GRCh38]
Chr16:70553645 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1196-7C>G single nucleotide variant not provided [RCV003145085] Chr16:70498062 [GRCh38]
Chr16:70531965 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2162C>A (p.Thr721Lys) single nucleotide variant not provided [RCV003145086] Chr16:70481432 [GRCh38]
Chr16:70515335 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.719C>T (p.Ser240Leu) single nucleotide variant not provided [RCV003145087] Chr16:70512258 [GRCh38]
Chr16:70546161 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.202_203del (p.Leu68fs) deletion not provided [RCV003145088] Chr16:70519700..70519701 [GRCh38]
Chr16:70553603..70553604 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1310A>G (p.Asn437Ser) single nucleotide variant not provided [RCV003145089] Chr16:70497941 [GRCh38]
Chr16:70531844 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.53A>G (p.Gln18Arg) single nucleotide variant not provided [RCV003225386] Chr16:70523491 [GRCh38]
Chr16:70557394 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.380A>G (p.Tyr127Cys) single nucleotide variant Inborn genetic diseases [RCV003197562] Chr16:70514499 [GRCh38]
Chr16:70548402 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.629C>T (p.Ala210Val) single nucleotide variant not provided [RCV003318797] Chr16:70512348 [GRCh38]
Chr16:70546251 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.665T>C (p.Phe222Ser) single nucleotide variant not provided [RCV003329866] Chr16:70512312 [GRCh38]
Chr16:70546215 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.61T>C (p.Ser21Pro) single nucleotide variant not provided [RCV003329853] Chr16:70523483 [GRCh38]
Chr16:70557386 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.137T>C (p.Leu46Pro) single nucleotide variant Inborn genetic diseases [RCV003343353] Chr16:70523407 [GRCh38]
Chr16:70557310 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.451A>G (p.Arg151Gly) single nucleotide variant Inborn genetic diseases [RCV003346872] Chr16:70514428 [GRCh38]
Chr16:70548331 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2141C>T (p.Ser714Leu) single nucleotide variant Inborn genetic diseases [RCV003386716] Chr16:70481453 [GRCh38]
Chr16:70515356 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1720A>T (p.Thr574Ser) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003504446] Chr16:70483960 [GRCh38]
Chr16:70517863 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.619T>C (p.Phe207Leu) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003504135] Chr16:70512358 [GRCh38]
Chr16:70546261 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.510G>A (p.Lys170=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003504152] Chr16:70514369 [GRCh38]
Chr16:70548272 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1002+13A>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV003502915] Chr16:70509218 [GRCh38]
Chr16:70543121 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.265C>A (p.Gln89Lys) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003502960] Chr16:70517730 [GRCh38]
Chr16:70551633 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1295T>C (p.Met432Thr) single nucleotide variant not provided [RCV003419392] Chr16:70497956 [GRCh38]
Chr16:70531859 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.3(chr16:69709450-73535741)x1 copy number loss not provided [RCV003483292] Chr16:69709450..73535741 [GRCh37]
Chr16:16q22.1-22.3
pathogenic
NM_015386.3(COG4):c.2332G>C (p.Asp778His) single nucleotide variant COG4-related condition [RCV003397510] Chr16:70481048 [GRCh38]
Chr16:70514951 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1-22.2(chr16:70179556-71750471)x3 copy number gain not provided [RCV003485119] Chr16:70179556..71750471 [GRCh37]
Chr16:16q22.1-22.2
uncertain significance
GRCh37/hg19 16q22.1(chr16:70305107-70594202)x3 copy number gain not provided [RCV003485120] Chr16:70305107..70594202 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.149A>T (p.Tyr50Phe) single nucleotide variant COG4-related condition [RCV003393181] Chr16:70523395 [GRCh38]
Chr16:70557298 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1051dup (p.Ile351fs) duplication not provided [RCV003411387] Chr16:70508415..70508416 [GRCh38]
Chr16:70542318..70542319 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.2314del (p.Val772fs) deletion COG4-related condition [RCV003405928] Chr16:70481066 [GRCh38]
Chr16:70514969 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.254G>A (p.Gly85Asp) single nucleotide variant COG4-related condition [RCV003410531] Chr16:70519649 [GRCh38]
Chr16:70553552 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.31C>T (p.Pro11Ser) single nucleotide variant not provided [RCV003426759] Chr16:70523513 [GRCh38]
Chr16:70557416 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.946A>C (p.Arg316=) single nucleotide variant not provided [RCV003490589] Chr16:70509287 [GRCh38]
Chr16:70543190 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1608del (p.Gly537fs) deletion COG4-congenital disorder of glycosylation [RCV003609928] Chr16:70496305 [GRCh38]
Chr16:70530208 [GRCh37]
Chr16:16q22.1
pathogenic
NM_015386.3(COG4):c.1839G>C (p.Thr613=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003609048] Chr16:70482810 [GRCh38]
Chr16:70516713 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2106+4A>G single nucleotide variant COG4-congenital disorder of glycosylation [RCV003609496] Chr16:70481760 [GRCh38]
Chr16:70515663 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.310T>G (p.Phe104Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003609318] Chr16:70517685 [GRCh38]
Chr16:70551588 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.484_485inv (p.Thr162Val) inversion COG4-congenital disorder of glycosylation [RCV003610653] Chr16:70514394..70514395 [GRCh38]
Chr16:70548297..70548298 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1064A>T (p.Glu355Val) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003610916] Chr16:70501089 [GRCh38]
Chr16:70534992 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.369G>A (p.Lys123=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003502185] Chr16:70517626 [GRCh38]
Chr16:70551529 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.897G>T (p.Gly299=) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003610685] Chr16:70509336 [GRCh38]
Chr16:70543239 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.2076G>T (p.Glu692Asp) single nucleotide variant COG4-congenital disorder of glycosylation [RCV003610565] Chr16:70481794 [GRCh38]
Chr16:70515697 [GRCh37]
Chr16:16q22.1
uncertain significance
GRCh37/hg19 16q22.1(chr16:70180112-70650383)x3 copy number gain not specified [RCV003987187] Chr16:70180112..70650383 [GRCh37]
Chr16:16q22.1
uncertain significance
NM_015386.3(COG4):c.1545C>T (p.Arg515=) single nucleotide variant COG4-related condition [RCV003947276] Chr16:70496368 [GRCh38]
Chr16:70530271 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1722C>G (p.Thr574=) single nucleotide variant COG4-related condition [RCV003923837] Chr16:70483958 [GRCh38]
Chr16:70517861 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.545-4G>A single nucleotide variant COG4-related condition [RCV003964079] Chr16:70512436 [GRCh38]
Chr16:70546339 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.21C>T (p.Asp7=) single nucleotide variant COG4-related condition [RCV003968914] Chr16:70523523 [GRCh38]
Chr16:70557426 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.1617G>A (p.Glu539=) single nucleotide variant COG4-related condition [RCV003943898] Chr16:70496296 [GRCh38]
Chr16:70530199 [GRCh37]
Chr16:16q22.1
likely benign
NM_015386.3(COG4):c.60G>C (p.Pro20=) single nucleotide variant COG4-related condition [RCV003911594] Chr16:70523484 [GRCh38]
Chr16:70557387 [GRCh37]
Chr16:16q22.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4129
Count of miRNA genes:1050
Interacting mature miRNAs:1312
Transcripts:ENST00000323786, ENST00000393612, ENST00000482252, ENST00000524584, ENST00000526700, ENST00000530160, ENST00000530314, ENST00000534772, ENST00000562200, ENST00000564315, ENST00000564415, ENST00000564653, ENST00000565715, ENST00000567244
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
STS-T95317  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,533,103 - 70,533,352UniSTSGRCh37
Build 361669,090,604 - 69,090,853RGDNCBI36
Celera1654,994,788 - 54,995,037RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,364,572 - 56,364,821UniSTS
GeneMap99-GB4 RH Map16411.68UniSTS
SHGC-33776  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,533,103 - 70,533,252UniSTSGRCh37
Build 361669,090,604 - 69,090,753RGDNCBI36
Celera1654,994,888 - 54,995,037RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,364,572 - 56,364,721UniSTS
GeneMap99-G3 RH Map163200.0UniSTS
RH64977  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,533,183 - 70,533,357UniSTSGRCh37
Build 361669,090,684 - 69,090,858RGDNCBI36
Celera1654,994,783 - 54,994,957RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,364,652 - 56,364,826UniSTS
RH64922  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,514,504 - 70,514,685UniSTSGRCh37
Build 361669,072,005 - 69,072,186RGDNCBI36
Celera1655,013,608 - 55,013,789RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,346,620 - 56,346,801UniSTS
D16S2587E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,514,511 - 70,514,624UniSTSGRCh37
Build 361669,072,012 - 69,072,125RGDNCBI36
Celera1655,013,669 - 55,013,782RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,346,627 - 56,346,740UniSTS
SHGC-147852  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,515,079 - 70,515,362UniSTSGRCh37
Build 361669,072,580 - 69,072,863RGDNCBI36
Celera1655,012,931 - 55,013,214RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,347,195 - 56,347,478UniSTS
STS-T86956  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,514,496 - 70,514,691UniSTSGRCh37
Build 361669,071,997 - 69,072,192RGDNCBI36
Celera1655,013,602 - 55,013,797RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,346,612 - 56,346,807UniSTS
GeneMap99-GB4 RH Map16410.32UniSTS
D16S2583E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,514,027 - 70,514,139UniSTSGRCh37
Build 361669,071,528 - 69,071,640RGDNCBI36
Celera1655,014,154 - 55,014,266RGD
Cytogenetic Map16q22.1UniSTS
HuRef1656,346,143 - 56,346,255UniSTS
GeneMap99-GB4 RH Map16425.4UniSTS
COG4_4609  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371670,514,390 - 70,515,041UniSTSGRCh37
Build 361669,071,891 - 69,072,542RGDNCBI36
Celera1655,013,252 - 55,013,903RGD
HuRef1656,346,506 - 56,347,157UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2433 2753 1694 594 1827 436 4357 2099 3557 413 1460 1611 175 1 1204 2788 6 1
Low 6 238 32 30 124 29 98 177 6 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_027529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001195139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_158212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_933267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB088369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC106804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU125729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP282697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000323786   ⟹   ENSP00000315775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,571 - 70,523,554 (-)Ensembl
RefSeq Acc Id: ENST00000393612   ⟹   ENSP00000377236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,572 - 70,523,554 (-)Ensembl
RefSeq Acc Id: ENST00000482252   ⟹   ENSP00000432802
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,574 - 70,523,531 (-)Ensembl
RefSeq Acc Id: ENST00000524584   ⟹   ENSP00000463732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,512,374 - 70,523,518 (-)Ensembl
RefSeq Acc Id: ENST00000526700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,578 - 70,508,757 (-)Ensembl
RefSeq Acc Id: ENST00000530160   ⟹   ENSP00000434160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,512,319 - 70,523,554 (-)Ensembl
RefSeq Acc Id: ENST00000530314
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,571 - 70,523,539 (-)Ensembl
RefSeq Acc Id: ENST00000534772   ⟹   ENSP00000461912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,642 - 70,523,550 (-)Ensembl
RefSeq Acc Id: ENST00000562200
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,509,872 - 70,523,540 (-)Ensembl
RefSeq Acc Id: ENST00000564315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,482,380 - 70,496,372 (-)Ensembl
RefSeq Acc Id: ENST00000564415   ⟹   ENSP00000456653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,568 - 70,523,558 (-)Ensembl
RefSeq Acc Id: ENST00000564653   ⟹   ENSP00000454573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,512,267 - 70,523,550 (-)Ensembl
RefSeq Acc Id: ENST00000565715   ⟹   ENSP00000455693
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,867 - 70,482,794 (-)Ensembl
RefSeq Acc Id: ENST00000567244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,497,973 - 70,501,597 (-)Ensembl
RefSeq Acc Id: ENST00000674443   ⟹   ENSP00000501405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,573 - 70,523,560 (-)Ensembl
RefSeq Acc Id: ENST00000703106   ⟹   ENSP00000515173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,581 - 70,523,492 (-)Ensembl
RefSeq Acc Id: ENST00000703107   ⟹   ENSP00000515174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,582 - 70,523,545 (-)Ensembl
RefSeq Acc Id: ENST00000703108   ⟹   ENSP00000515175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,588 - 70,523,558 (-)Ensembl
RefSeq Acc Id: ENST00000703109   ⟹   ENSP00000515176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,594 - 70,523,450 (-)Ensembl
RefSeq Acc Id: ENST00000703110   ⟹   ENSP00000515177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,607 - 70,523,541 (-)Ensembl
RefSeq Acc Id: ENST00000703111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,615 - 70,523,550 (-)Ensembl
RefSeq Acc Id: ENST00000703112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,748 - 70,523,550 (-)Ensembl
RefSeq Acc Id: ENST00000703113   ⟹   ENSP00000515178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,845 - 70,523,554 (-)Ensembl
RefSeq Acc Id: ENST00000703114   ⟹   ENSP00000515179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,859 - 70,523,550 (-)Ensembl
RefSeq Acc Id: ENST00000703115   ⟹   ENSP00000515180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,480,969 - 70,523,399 (-)Ensembl
RefSeq Acc Id: NM_001195139   ⟹   NP_001182068
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381670,480,567 - 70,523,554 (-)NCBI
GRCh371670,514,472 - 70,557,457 (-)ENTREZGENE
HuRef1656,346,588 - 56,388,520 (-)ENTREZGENE
CHM1_11671,921,846 - 71,964,791 (-)NCBI
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365426   ⟹   NP_001352355
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381670,480,567 - 70,523,554 (-)NCBI
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBI
Sequence:
RefSeq Acc Id: NM_015386   ⟹   NP_056201
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381670,480,571 - 70,523,554 (-)NCBI
GRCh371670,514,472 - 70,557,457 (-)RGD
Build 361669,071,973 - 69,114,958 (-)NCBI Archive
Celera1654,970,686 - 55,013,821 (+)RGD
HuRef1656,346,588 - 56,388,520 (-)ENTREZGENE
CHM1_11671,921,846 - 71,964,791 (-)NCBI
T2T-CHM13v2.01676,291,602 - 76,334,735 (-)NCBI
Sequence:
RefSeq Acc Id: NR_158212
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381670,480,567 - 70,523,554 (-)NCBI
T2T-CHM13v2.01676,291,598 - 76,334,735 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352355 (Get FASTA)   NCBI Sequence Viewer  
  NP_056201 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH00796 (Get FASTA)   NCBI Sequence Viewer  
  AAH06306 (Get FASTA)   NCBI Sequence Viewer  
  AAH13347 (Get FASTA)   NCBI Sequence Viewer  
  AAH27726 (Get FASTA)   NCBI Sequence Viewer  
  AAH72438 (Get FASTA)   NCBI Sequence Viewer  
  AAI28145 (Get FASTA)   NCBI Sequence Viewer  
  AAI28146 (Get FASTA)   NCBI Sequence Viewer  
  BAB14286 (Get FASTA)   NCBI Sequence Viewer  
  BAB15483 (Get FASTA)   NCBI Sequence Viewer  
  BAC04816 (Get FASTA)   NCBI Sequence Viewer  
  BAC05682 (Get FASTA)   NCBI Sequence Viewer  
  BAG56773 (Get FASTA)   NCBI Sequence Viewer  
  BAG59950 (Get FASTA)   NCBI Sequence Viewer  
  CAB43272 (Get FASTA)   NCBI Sequence Viewer  
  EAW51806 (Get FASTA)   NCBI Sequence Viewer  
  EAW51807 (Get FASTA)   NCBI Sequence Viewer  
  EAW51808 (Get FASTA)   NCBI Sequence Viewer  
  EAW51809 (Get FASTA)   NCBI Sequence Viewer  
  EAW51810 (Get FASTA)   NCBI Sequence Viewer  
  EAW51811 (Get FASTA)   NCBI Sequence Viewer  
  EAW51812 (Get FASTA)   NCBI Sequence Viewer  
  EAW51813 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000315775
  ENSP00000315775.5
  ENSP00000377236.5
  ENSP00000432802.1
  ENSP00000434160.2
  ENSP00000454573.2
  ENSP00000455693.1
  ENSP00000456653.2
  ENSP00000461912.2
  ENSP00000463732.1
  ENSP00000501405
  ENSP00000501405.1
  ENSP00000515173.1
  ENSP00000515174.1
  ENSP00000515175.1
  ENSP00000515176.1
  ENSP00000515177.1
  ENSP00000515178.1
  ENSP00000515179.1
  ENSP00000515180.1
GenBank Protein Q9H9E3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056201   ⟸   NM_015386
- Peptide Label: isoform 1
- UniProtKB: Q9Y3W3 (UniProtKB/Swiss-Prot),   Q9H9E3 (UniProtKB/Swiss-Prot),   Q9H5Y4 (UniProtKB/Swiss-Prot),   Q9BVZ2 (UniProtKB/Swiss-Prot),   Q9BRF0 (UniProtKB/Swiss-Prot),   Q96D40 (UniProtKB/Swiss-Prot),   C9JS23 (UniProtKB/Swiss-Prot),   B4DMN8 (UniProtKB/Swiss-Prot),   J3KNI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001182068   ⟸   NM_001195139
- Peptide Label: isoform 2
- UniProtKB: A0A6I8PIQ6 (UniProtKB/TrEMBL),   Q6PIW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001352355   ⟸   NM_001365426
- Peptide Label: isoform 3
- UniProtKB: Q8N8L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000501405   ⟸   ENST00000674443
RefSeq Acc Id: ENSP00000434160   ⟸   ENST00000530160
RefSeq Acc Id: ENSP00000315775   ⟸   ENST00000323786
RefSeq Acc Id: ENSP00000461912   ⟸   ENST00000534772
RefSeq Acc Id: ENSP00000432802   ⟸   ENST00000482252
RefSeq Acc Id: ENSP00000463732   ⟸   ENST00000524584
RefSeq Acc Id: ENSP00000456653   ⟸   ENST00000564415
RefSeq Acc Id: ENSP00000377236   ⟸   ENST00000393612
RefSeq Acc Id: ENSP00000454573   ⟸   ENST00000564653
RefSeq Acc Id: ENSP00000455693   ⟸   ENST00000565715
RefSeq Acc Id: ENSP00000515177   ⟸   ENST00000703110
RefSeq Acc Id: ENSP00000515173   ⟸   ENST00000703106
RefSeq Acc Id: ENSP00000515179   ⟸   ENST00000703114
RefSeq Acc Id: ENSP00000515175   ⟸   ENST00000703108
RefSeq Acc Id: ENSP00000515180   ⟸   ENST00000703115
RefSeq Acc Id: ENSP00000515174   ⟸   ENST00000703107
RefSeq Acc Id: ENSP00000515178   ⟸   ENST00000703113
RefSeq Acc Id: ENSP00000515176   ⟸   ENST00000703109
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H9E3-F1-model_v2 AlphaFold Q9H9E3 1-785 view protein structure

Promoters
RGD ID:6815134
Promoter ID:HG_MRA:6179
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:BC000796
Position:
Human AssemblyChrPosition (strand)Source
Build 361669,072,946 - 69,073,446 (-)MPROMDB
RGD ID:6792929
Promoter ID:HG_KWN:24163
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000219329,   ENST00000310750,   ENST00000393612,   NM_012426,   OTTHUMT00000250326,   UC002EZD.1,   UC002EZE.1,   UC010CFU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361669,113,956 - 69,115,597 (-)MPROMDB
RGD ID:6852232
Promoter ID:EP73922
Type:initiation region
Name:HS_COG4
Description:Component of oligomeric golgi complex 4.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361669,114,940 - 69,115,000EPD
RGD ID:7232741
Promoter ID:EPDNEW_H22116
Type:multiple initiation site
Name:COG4_1
Description:component of oligomeric golgi complex 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381670,523,548 - 70,523,608EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18620 AgrOrtholog
COSMIC COG4 COSMIC
Ensembl Genes ENSG00000103051 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000323786 ENTREZGENE
  ENST00000323786.10 UniProtKB/TrEMBL
  ENST00000393612.8 UniProtKB/TrEMBL
  ENST00000482252.5 UniProtKB/Swiss-Prot
  ENST00000524584.1 UniProtKB/TrEMBL
  ENST00000530160.2 UniProtKB/TrEMBL
  ENST00000534772.2 UniProtKB/TrEMBL
  ENST00000564415.6 UniProtKB/TrEMBL
  ENST00000564653.6 UniProtKB/TrEMBL
  ENST00000565715.1 UniProtKB/TrEMBL
  ENST00000674443 ENTREZGENE
  ENST00000674443.1 UniProtKB/TrEMBL
  ENST00000703106.1 UniProtKB/TrEMBL
  ENST00000703107.1 UniProtKB/TrEMBL
  ENST00000703108 ENTREZGENE
  ENST00000703108.1 UniProtKB/TrEMBL
  ENST00000703109.1 UniProtKB/TrEMBL
  ENST00000703110.1 UniProtKB/TrEMBL
  ENST00000703113.1 UniProtKB/TrEMBL
  ENST00000703114.1 UniProtKB/TrEMBL
  ENST00000703115.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ESAT-6-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000103051 GTEx
HGNC ID HGNC:18620 ENTREZGENE
Human Proteome Map COG4 Human Proteome Map
InterPro COG4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG_su4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25839 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 25839 ENTREZGENE
OMIM 606976 OMIM
PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
Pfam COG4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COG4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38603 PharmGKB
SMART Cog4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MS45_HUMAN UniProtKB/TrEMBL
  A0A6I8PIQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8V8TQ33_HUMAN UniProtKB/TrEMBL
  A0A8V8TQ38_HUMAN UniProtKB/TrEMBL
  A0A8V8TQL5_HUMAN UniProtKB/TrEMBL
  A0A8V8TQL9_HUMAN UniProtKB/TrEMBL
  A0A8V8TQM1_HUMAN UniProtKB/TrEMBL
  A0A8V8TR60_HUMAN UniProtKB/TrEMBL
  A0A8V8TRG1_HUMAN UniProtKB/TrEMBL
  A2VCL3_HUMAN UniProtKB/TrEMBL
  B4DDL2_HUMAN UniProtKB/TrEMBL
  B4DMN8 ENTREZGENE
  C9JS23 ENTREZGENE
  COG4_HUMAN UniProtKB/Swiss-Prot
  E9PRT5_HUMAN UniProtKB/TrEMBL
  H3BMV9_HUMAN UniProtKB/TrEMBL
  H3BQB2_HUMAN UniProtKB/TrEMBL
  H3BSD2_HUMAN UniProtKB/TrEMBL
  J3KNI1 ENTREZGENE, UniProtKB/TrEMBL
  J3KRB5_HUMAN UniProtKB/TrEMBL
  J3QLW1_HUMAN UniProtKB/TrEMBL
  Q6PIW8 ENTREZGENE, UniProtKB/TrEMBL
  Q8N8L9 ENTREZGENE, UniProtKB/TrEMBL
  Q96D40 ENTREZGENE
  Q9BRF0 ENTREZGENE
  Q9BVZ2 ENTREZGENE
  Q9H5Y4 ENTREZGENE
  Q9H9E3 ENTREZGENE
  Q9Y3W3 ENTREZGENE
UniProt Secondary B4DMN8 UniProtKB/Swiss-Prot
  C9JS23 UniProtKB/Swiss-Prot
  Q96D40 UniProtKB/Swiss-Prot
  Q9BRF0 UniProtKB/Swiss-Prot
  Q9BVZ2 UniProtKB/Swiss-Prot
  Q9H5Y4 UniProtKB/Swiss-Prot
  Q9Y3W3 UniProtKB/Swiss-Prot