Elk4 (ELK4, member of ETS oncogene family) - Rat Genome Database

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Gene: Elk4 (ELK4, member of ETS oncogene family) Mus musculus
Analyze
Symbol: Elk4
Name: ELK4, member of ETS oncogene family
RGD ID: 1321445
MGI Page MGI
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; genitourinary system; hemolymphoid system; and retina. Orthologous to human ELK4 (ETS transcription factor ELK4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310011G17Rik; A130026I01Rik; BB162516; ETS domain-containing protein Elk-4; S; SAP-1; Sap1; serum response factor accessory protein 1; SRF accessory protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,935,129 - 131,954,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,935,345 - 131,960,350 (+)EnsemblGRCm39 Ensembl
GRCm381132,007,577 - 132,026,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,007,607 - 132,032,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,904,182 - 133,922,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,835,422 - 133,851,209 (+)NCBIMGSCv36mm8
Celera1134,612,092 - 134,629,885 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
dapsone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
Diisodecyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
glyphosate  (ISO)
ibuprofen  (ISO)
ifosfamide  (ISO)
iron dichloride  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nitrates  (EXP)
ozone  (EXP)
paracetamol  (ISO)
PCB138  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sunitinib  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7958835   PMID:8575773   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:14770179   PMID:16141072  
PMID:16141073   PMID:16466398   PMID:16602821   PMID:16778019   PMID:17907201   PMID:17982074   PMID:18287559   PMID:18799693   PMID:20022248   PMID:20304071   PMID:20554967   PMID:20932939  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22056786   PMID:22988430   PMID:23063436   PMID:23563308   PMID:24758171   PMID:24952961   PMID:25203538   PMID:26097038   PMID:28275114  
PMID:30068599   PMID:30973865   PMID:31461342   PMID:34091806   PMID:34215813   PMID:34321999   PMID:35082159   PMID:38355793   PMID:39173777  


Genomics

Comparative Map Data
Elk4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,935,129 - 131,954,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,935,345 - 131,960,350 (+)EnsemblGRCm39 Ensembl
GRCm381132,007,577 - 132,026,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,007,607 - 132,032,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,904,182 - 133,922,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,835,422 - 133,851,209 (+)NCBIMGSCv36mm8
Celera1134,612,092 - 134,629,885 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.24NCBI
ELK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,607,943 - 205,632,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,597,556 - 205,632,011 (-)EnsemblGRCh38hg38GRCh38
GRCh371205,577,071 - 205,601,139 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,851,858 - 203,868,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 341202,320,054 - 202,333,657NCBI
Celera1178,721,418 - 178,738,288 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,742,986 - 176,767,339 (-)NCBIHuRef
CHM1_11207,000,351 - 207,025,311 (-)NCBICHM1_1
T2T-CHM13v2.01204,872,578 - 204,896,650 (-)NCBIT2T-CHM13v2.0
Elk4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,004,145 - 46,027,206 (+)NCBIGRCr8
mRatBN7.21343,451,130 - 43,475,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,435,843 - 43,475,035 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,059,138 - 46,081,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,347,288 - 47,370,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,608,147 - 44,630,900 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,788,262 - 48,813,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,790,509 - 48,813,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,859,962 - 53,883,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,891,369 - 44,914,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,911,558 - 44,919,627 (+)NCBI
Celera1343,789,583 - 43,812,345 (+)NCBICelera
Cytogenetic Map13q13NCBI
Elk4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,325,921 - 41,334,359 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,325,921 - 41,333,503 (-)NCBIChiLan1.0ChiLan1.0
ELK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,738,208 - 43,767,262 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,703,533 - 43,732,591 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,216,587 - 181,242,023 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,509,937 - 185,518,447 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,509,937 - 185,518,452 (-)Ensemblpanpan1.1panPan2
ELK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,069,829 - 2,085,381 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,078,008 - 2,125,069 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,162,966 - 2,185,149 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,066,704 - 2,088,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,072,417 - 2,089,114 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,061,957 - 2,083,106 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,453,513 - 2,475,688 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,653,737 - 2,675,907 (-)NCBIUU_Cfam_GSD_1.0
Elk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,565,015 - 69,572,341 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,757,223 - 6,815,712 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,805,305 - 6,814,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,297,338 - 66,323,168 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,293,038 - 66,316,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,564,240 - 72,581,905 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,714,591 - 23,731,330 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,714,708 - 23,729,925 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,411,585 - 24,435,164 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elk4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,604,183 - 5,617,319 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,603,815 - 5,620,856 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elk4
905 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1806
Count of miRNA genes:759
Interacting mature miRNAs:1007
Transcripts:ENSMUST00000027696, ENSMUST00000086556, ENSMUST00000124579, ENSMUST00000131159, ENSMUST00000146188, ENSMUST00000146432, ENSMUST00000147218
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
BB162516  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,009,982 - 132,010,106UniSTSGRCm38
MGSCv371133,906,559 - 133,906,683UniSTSGRCm37
Celera1134,614,469 - 134,614,593UniSTS
Cytogenetic Map1E3-GUniSTS
Whitehead/MRC_RH11746.3UniSTS
AI850289  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,023,155 - 132,023,298UniSTSGRCm38
MGSCv371133,919,732 - 133,919,875UniSTSGRCm37
Celera1134,627,356 - 134,627,499UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3-GUniSTS
Whitehead/MRC_RH11746.89UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001376954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ713371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN434116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN434117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN434118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z36885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027696   ⟹   ENSMUSP00000027696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,935,614 - 131,951,399 (+)Ensembl
GRCm38.p6 Ensembl1132,007,876 - 132,023,661 (+)Ensembl
Ensembl Acc Id: ENSMUST00000086556   ⟹   ENSMUSP00000083743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,935,345 - 131,954,186 (+)Ensembl
GRCm38.p6 Ensembl1132,007,607 - 132,026,448 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,935,847 - 131,942,194 (+)Ensembl
GRCm38.p6 Ensembl1132,008,109 - 132,014,456 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,946,181 - 131,959,432 (+)Ensembl
GRCm38.p6 Ensembl1132,018,443 - 132,031,694 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,935,837 - 131,942,336 (+)Ensembl
GRCm38.p6 Ensembl1132,008,099 - 132,014,598 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146432   ⟹   ENSMUSP00000118880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,936,035 - 131,946,043 (+)Ensembl
GRCm38.p6 Ensembl1132,008,297 - 132,018,305 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147218   ⟹   ENSMUSP00000114255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1131,945,546 - 131,960,350 (+)Ensembl
GRCm38.p6 Ensembl1132,017,808 - 132,032,612 (+)Ensembl
RefSeq Acc Id: NM_001376954   ⟹   NP_001363883
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,840 - 131,954,186 (+)NCBI
GRCm381132,008,102 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376955   ⟹   NP_001363884
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,936,083 - 131,954,186 (+)NCBI
GRCm381132,008,345 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376956   ⟹   NP_001363885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,936,083 - 131,954,186 (+)NCBI
GRCm381132,008,345 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376957   ⟹   NP_001363886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,358 - 131,954,186 (+)NCBI
GRCm381132,007,620 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376958   ⟹   NP_001363887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,840 - 131,954,186 (+)NCBI
GRCm381132,008,102 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376959   ⟹   NP_001363888
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,358 - 131,954,186 (+)NCBI
GRCm381132,007,620 - 132,026,448 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007923   ⟹   NP_031949
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,358 - 131,954,186 (+)NCBI
GRCm381132,007,620 - 132,026,448 (+)NCBI
MGSCv371133,904,182 - 133,922,261 (+)RGD
Celera1134,612,092 - 134,629,885 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158973   ⟹   XP_036014866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391131,935,129 - 131,954,186 (+)NCBI
Sequence:
RefSeq Acc Id: NP_031949   ⟸   NM_007923
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001363886   ⟸   NM_001376957
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001363888   ⟸   NM_001376959
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001363887   ⟸   NM_001376958
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001363883   ⟸   NM_001376954
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001363885   ⟸   NM_001376956
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001363884   ⟸   NM_001376955
- Peptide Label: isoform 1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000083743   ⟸   ENSMUST00000086556
Ensembl Acc Id: ENSMUSP00000027696   ⟸   ENSMUST00000027696
Ensembl Acc Id: ENSMUSP00000114255   ⟸   ENSMUST00000147218
Ensembl Acc Id: ENSMUSP00000118880   ⟸   ENSMUST00000146432
RefSeq Acc Id: XP_036014866   ⟸   XM_036158973
- Peptide Label: isoform X1
- UniProtKB: P41158 (UniProtKB/Swiss-Prot),   A6H693 (UniProtKB/Swiss-Prot)
Protein Domains
ETS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P41158-F1-model_v2 AlphaFold P41158 1-430 view protein structure

Promoters
RGD ID:6874896
Promoter ID:EPDNEW_M899
Type:initiation region
Name:Elk4_1
Description:Mus musculus ELK4, member of ETS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M900  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,007,620 - 132,007,680EPDNEW
RGD ID:6874898
Promoter ID:EPDNEW_M900
Type:initiation region
Name:Elk4_2
Description:Mus musculus ELK4, member of ETS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M899  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,008,345 - 132,008,405EPDNEW
RGD ID:6817640
Promoter ID:MM_KWN:2055
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007923,   OTTMUST00000061505,   OTTMUST00000061507,   OTTMUST00000061508,   UC007COB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361133,903,366 - 133,905,022 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102853 AgrOrtholog
Ensembl Genes ENSMUSG00000026436 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027696 ENTREZGENE
  ENSMUST00000027696.10 UniProtKB/Swiss-Prot
  ENSMUST00000086556 ENTREZGENE
  ENSMUST00000086556.12 UniProtKB/Swiss-Prot
  ENSMUST00000146432.2 UniProtKB/TrEMBL
  ENSMUST00000147218.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13714 UniProtKB/Swiss-Prot
MGD MGI:102853 ENTREZGENE
NCBI Gene 13714 ENTREZGENE
PANTHER ETS DOMAIN-CONTAINING PROTEIN ELK-4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ets UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elk4 PhenoGen
PRINTS ETSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ETS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GXH8_MOUSE UniProtKB/TrEMBL
  A6H693 ENTREZGENE
  C7C6A9_MOUSE UniProtKB/TrEMBL
  C7C6B0_MOUSE UniProtKB/TrEMBL
  C7C6B1_MOUSE UniProtKB/TrEMBL
  ELK4_MOUSE UniProtKB/Swiss-Prot
  F6ZCI1_MOUSE UniProtKB/TrEMBL
  P41158 ENTREZGENE
  Q8C6Q0_MOUSE UniProtKB/TrEMBL
  Q8C9K0_MOUSE UniProtKB/TrEMBL
  Q99K98_MOUSE UniProtKB/TrEMBL
UniProt Secondary A0A0A6YYQ8 UniProtKB/TrEMBL
  A0A0K0K1B5 UniProtKB/TrEMBL
  A6H693 UniProtKB/Swiss-Prot
  F6WN08 UniProtKB/TrEMBL