Sugp1 (SURP and G patch domain containing 1)

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Gene: Sugp1 (SURP and G patch domain containing 1) Mus musculus

Analyze

Symbol:

Sugp1

Name:

SURP and G patch domain containing 1

RGD ID:

1321430

MGI Page

MGI

Description:

Predicted to have RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to localize to nucleoplasm. Orthologous to human SUGP1 (SURP and G-patch domain containing 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

5730496N02Rik; Sf; Sf4; splicing factor 4; SURP and G-patch domain-containing protein 1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Related Pseudogenes:

Gm5315

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,495,435 - 70,524,997 (+)	NCBI	GRCm39		mm39
GRCm38	8	70,042,769 - 70,072,347 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,042,813 - 70,072,347 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,566,712 - 72,595,852 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	72,971,802 - 73,000,942 (+)	NCBI			mm8
Celera	8	72,603,099 - 72,632,001 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

3,4-methylenedioxymethamphetamine (EXP)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

atrazine (ISO)

benzo[e]pyrene (ISO)

bisphenol A (ISO)

casticin (EXP)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (EXP)

flutamide (ISO)

hexane (ISO)

hydrogen peroxide (EXP)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (ISO)

methapyrilene (ISO)

paracetamol (EXP)

PCB138 (ISO)

quercitrin (ISO)

sunitinib (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

RNA processing (IEA)

RNA splicing (IEA)

Cellular Component

nucleoplasm (ISO)

nucleus (IEA)

spliceosomal complex (IEA)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal circulating total protein level (IEA)

abnormal craniofacial morphology (IEA)

abnormal embryo size (IEA)

abnormal heart weight (IEA)

abnormal leukocyte cell number (IEA)

abnormal lymphocyte cell number (IEA)

abnormal startle reflex (IEA)

female infertility (IEA)

preweaning lethality, incomplete penetrance (IEA)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12520002	PMID:12594045	PMID:14610273	PMID:15489334	PMID:15782199	PMID:16141072
PMID:16141073	PMID:16602821	PMID:21267068	PMID:21677750	PMID:22922362	PMID:27206982	PMID:30196744	PMID:30457570	PMID:32325033

Genomics

Comparative Map Data

Sugp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,495,435 - 70,524,997 (+)	NCBI	GRCm39		mm39
GRCm38	8	70,042,769 - 70,072,347 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,042,813 - 70,072,347 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,566,712 - 72,595,852 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	72,971,802 - 73,000,942 (+)	NCBI			mm8
Celera	8	72,603,099 - 72,632,001 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

SUGP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	19,276,018 - 19,320,509 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	19,276,033 - 19,320,509 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	19,387,320 - 19,431,321 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,248,322 - 19,292,307 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	19,291,389 - 19,335,381 (-)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,951,058 - 18,994,630 (-)	NCBI		HuRef
CHM1_1	19	19,388,088 - 19,432,088 (-)	NCBI		CHM1_1

Sugp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	21,100,923 - 21,131,795 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,100,924 - 21,131,795 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,950,430 - 20,985,149 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	16	21,016,310 - 21,047,301 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,835,921 - 19,866,795 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	19,835,919 - 19,866,793 (-)	NCBI
Celera	16	19,541,347 - 19,572,611 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Sugp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,563,263 - 2,584,834 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,563,299 - 2,584,046 (+)	NCBI	ChiLan1.0	ChiLan1.0

SUGP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	19,718,310 - 19,762,402 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,718,310 - 19,762,402 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	18,715,215 - 18,758,712 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SUGP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	43,891,750 - 43,922,986 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	43,891,572 - 43,922,991 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Sugp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	2,133,090 - 2,164,042 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUGP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,574,540 - 58,615,449 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,574,434 - 58,615,054 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SUGP1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,743,065 - 17,784,325 (-)	NCBI
ChlSab1.1 Ensembl	6	17,743,388 - 17,784,126 (-)	Ensembl

Sugp1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	2,145,644 - 2,165,066 (-)	NCBI

Position Markers

BE136470

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	70,072,137 - 70,072,257	UniSTS	GRCm38
MGSCv37	8	72,596,036 - 72,596,156	UniSTS	GRCm37
Celera	8	72,632,185 - 72,632,305	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	741.8	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	81
Interacting mature miRNAs:	85
Transcripts:	ENSMUST00000011450
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001368391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_027481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030243755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036154283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC167132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF521129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK156508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000011450 ⟹ ENSMUSP00000011450

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,042,813 - 70,072,347 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000211808

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,043,034 - 70,066,911 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000213035

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,043,049 - 70,058,319 (+)	Ensembl

RefSeq Acc Id:

NM_001368391 ⟹ NP_001355320

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,495,437 - 70,524,997 (+)	NCBI
GRCm38	8	70,042,787 - 70,072,347 (+)	NCBI

Sequence:

show sequence

ACTTCTGGGTCTTATGGTGTGTGTTCGAAGTGGCTCCGACTGAGGAAGACTCTGAGGAGAGGAT
GATACCTCTGCATCATCGTAACTGAGAGTGGCGCCGGAGCATTGTGGGATTGGATGAGTCTCAA
GATGGACAACCGGGATGTTGCAGGAAAGGCCAATCGGTGGTTTGGGATGGCACAACCCAAGTCT
GGAAAGATGAATATGAACATCCTCCACCAGGAAGAGCTTATTGCTCAGAAGAAGCGGGAGATTG
AGGCCAGAATGGAACAAAAGGCCAGACAGAGTCATGTGCCCAGTCCACAGCCCCCTCATCCTGG
AGAAATTGCTGATGCACATAACTCCTGCATCTCCAACAAGTTTGCCAATGATGGCAGCTTCCTG
CAGCAGTTTCTGAAGTTACAGAAGGCACAGACAAGCACAGATTCAGCCCCCAGGGCCCCTCCCA
GCATGCCAACACCCAGCTCCTTGAAGAAACCCCTTGTGCTCAGCAAGCGAACAGGCCTGGGACT
GAGTAGCCCAACGGGTCCTGTGAAGAACTACTCACATGCCAAACAGCTGCCTGTTGCACACCGC
CCGAGTGTCTTCCAGTCCCCTGATGATGATGAGGAGGAGGACTATGAGCAGTGGCTGGAAATCA
AAGTTTCACCCCCAGAGGGAGCCGAGACTCGGAGAGTGATAGAGAAGCTGGCCCGTTTTGTGGC
AGAAGGAGGCCCCGAGCTAGAGAAAGTAGCTATGGAGGACTACAAGGATAACCCGGCCTTCACA
TTTTTACATGATAAGAATAGCAGGGAATTCCTGTACTACAGAAGGAAGGTAGCCGAGATCAGGA
AAGAAGCCCAAAAGCCACAGGCAGCCACCCAGAAAGTTTCACCCCCAGAGGATGAAGAGGCCAA
GAACCTTGCAGAAAAGTTGGCCAGGTTCATAGCAGACGGGGGTCCAGAAGTGGAGACCATCGCC
CTCCAGAACAACCGTGAGAATCAGGCCTTCAGTTTTCTCTATGATCCCAACAGCCAAGGGTACA
GATACTACAGGCAAAAGCTAGATGAGTTCCGGAAAGCCAAGGCGGGCTCCACAGGCTCCTTCCC
TGCTCCTGCTCCCAACCCCAGCCTGCGGCGAAAGTCTGCCCCAGAAGCCCTGTCAGGGGCTGTG
CCCCCCATCACTGCCTGCCCCACTCCAGTGGCCCCAGCACCTGCTGTCAACCCCACTCCATCCA
TCCCTGGGAAGCCCACCGCCACAGCCGCTGTGAAGAGGAAGCGGAAGAGCCGGTGGGGGCCTGA
AGAGGACAAAGTGGAGCTTCCACCTGCTGAACTGGCACAGAGGGACATAGATGCCTCACCTTCA
CCTCTTTCAGTTCAGGATCTCAAAGGGCTTGGCTATGAGAAGGGGAAACCTGTGGGCCTGGTGG
GTGTCACAGAGCTGTCTGATGCACAAAAGAAGCAGCTGAAGGAGCAGCAGGAGATGCAGCAGAT
GTATGACATGATTATGCAGCACAAGCGCGCCATGCAAGACATGCAGCTTCTGTGGGAGAAGGCG
CTGCAGCAACACCAGCATGGCTATGACAGTGATGAGGAGGTAGACAGTGAACTGGGCACCTGGG
AGCACCAGCTGCGACGCATGGAGATGGACAAGACACGGGAGTGGGCAGAGCAGCTGACACAGAT
GGGTCGGGGCAAGCACTTCATCGGTGACTTTCTGCCCCCTGATGAGCTGGAGAAGTTCATGGAG
ACCTTCAAGGCCCTGAAGGAGGGCAGAGAGCCAGACTACTCAGAATATAAGGAGTTTAAGCTGA
CGGTGGAAAACATTGGCTACCAGATGCTCATGAAGATGGGCTGGAAAGAGGGCGAGGGGCTGGG
CACTGAGGGCCAGGGCATCAAGAACCCAGTGAACAAGGGTGCCACCACAATAGATGGAGCTGGC
TTTGGCATCGACCGGCCAGCTGAACTCTCCAAGGAGGATGATGAGTACGAGGCCTTCCGCAAGA
GGATGATGCTGGCCTACCGATTCCGGCCCAACCCGCTGAACAACCCCAGACGGCCCTACTACTG
AATATTCTGGAAACACAAAGTCTACATTCAGATCGGCCATCCTTGGACTATGAAATGTTCTGGC
ATCCATCTCTATCCTGTGGTCACAAGTGTTGTGCTGTGTATTAAAGTCCCAATGCTCACCTGTC
CAGCATTCCAGTTCCTGCTGTTGCCAGAAACCTCTTTTGTCCCTCCTCCAGTCCCACTGAGGCT
CATTGAGTTCACAGTAACTGGAGACCAGCCAGTTGATTCAGACTTTACCCCAGGCAGAGGAAAA
AGAGGCTTCCAAACACTTCATGATATGTGCATGGGCTGGTGTGGACTGGGCACAGCTGGAGTAT
GGGTAGGGCCTGTCTAGAGGCAGAGGCCTGGGCTGTCTCATGTATTGCTCACTGCATAGCTGCA
AGAGCCCAGCTGGAGCCCGTGATGGTCAATCTTTGCAGCTTCATCCCATTTGTGCTGCCCTGGA
TCCTCCCCAGACCTCTCCAGCTAGTCAAAGTCCTCAAGAGAATAAGAATGATAAATCTGAGTAC
TCCA

hide sequence

RefSeq Acc Id:

NM_027481 ⟹ NP_081757

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,495,437 - 70,524,997 (+)	NCBI
GRCm38	8	70,042,787 - 70,072,347 (+)	NCBI
MGSCv37	8	72,566,712 - 72,595,852 (+)	RGD
Celera	8	72,603,099 - 72,632,001 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

ACTTCTGGGTCTTATGGTGTGTGTTCGAAGTGGCTCCGACTGAGGAAGACTCTGAGGAGAGGAT
GATACCTCTGCATCATCGTAACTGAGAGTAATACACGTTCGTGAACTGACGCCGGCGTTTCTGT
GGAGAAGACGCCCGGTGTCCTAGAAGGGGGTTGGACGAGATTGTCGGAGAAGGACTACATTTAC
CATCAGACCAAGCGCACTATAACAGAGCCTCCCTCTTCTCAGGTGGCGCCGGAGCATTGTGGGA
TTGGATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGAAAGGCCAATCGGTGGTTTGGGATG
GCACAACCCAAGTCTGGAAAGATGAATATGAACATCCTCCACCAGGAAGAGCTTATTGCTCAGA
AGAAGCGGGAGATTGAGGCCAGAATGGAACAAAAGGCCAGACAGAGTCATGTGCCCAGTCCACA
GCCCCCTCATCCTGGAGAAATTGCTGATGCACATAACTCCTGCATCTCCAACAAGTTTGCCAAT
GATGGCAGCTTCCTGCAGCAGTTTCTGAAGTTACAGAAGGCACAGACAAGCACAGATTCAGCCC
CCAGGGCCCCTCCCAGCATGCCAACACCCAGCTCCTTGAAGAAACCCCTTGTGCTCAGCAAGCG
AACAGGCCTGGGACTGAGTAGCCCAACGGGTCCTGTGAAGAACTACTCACATGCCAAACAGCTG
CCTGTTGCACACCGCCCGAGTGTCTTCCAGTCCCCTGATGATGATGAGGAGGAGGACTATGAGC
AGTGGCTGGAAATCAAAGTTTCACCCCCAGAGGGAGCCGAGACTCGGAGAGTGATAGAGAAGCT
GGCCCGTTTTGTGGCAGAAGGAGGCCCCGAGCTAGAGAAAGTAGCTATGGAGGACTACAAGGAT
AACCCGGCCTTCACATTTTTACATGATAAGAATAGCAGGGAATTCCTGTACTACAGAAGGAAGG
TAGCCGAGATCAGGAAAGAAGCCCAAAAGCCACAGGCAGCCACCCAGAAAGTTTCACCCCCAGA
GGATGAAGAGGCCAAGAACCTTGCAGAAAAGTTGGCCAGGTTCATAGCAGACGGGGGTCCAGAA
GTGGAGACCATCGCCCTCCAGAACAACCGTGAGAATCAGGCCTTCAGTTTTCTCTATGATCCCA
ACAGCCAAGGGTACAGATACTACAGGCAAAAGCTAGATGAGTTCCGGAAAGCCAAGGCGGGCTC
CACAGGCTCCTTCCCTGCTCCTGCTCCCAACCCCAGCCTGCGGCGAAAGTCTGCCCCAGAAGCC
CTGTCAGGGGCTGTGCCCCCCATCACTGCCTGCCCCACTCCAGTGGCCCCAGCACCTGCTGTCA
ACCCCACTCCATCCATCCCTGGGAAGCCCACCGCCACAGCCGCTGTGAAGAGGAAGCGGAAGAG
CCGGTGGGGGCCTGAAGAGGACAAAGTGGAGCTTCCACCTGCTGAACTGGCACAGAGGGACATA
GATGCCTCACCTTCACCTCTTTCAGTTCAGGATCTCAAAGGGCTTGGCTATGAGAAGGGGAAAC
CTGTGGGCCTGGTGGGTGTCACAGAGCTGTCTGATGCACAAAAGAAGCAGCTGAAGGAGCAGCA
GGAGATGCAGCAGATGTATGACATGATTATGCAGCACAAGCGCGCCATGCAAGACATGCAGCTT
CTGTGGGAGAAGGCGCTGCAGCAACACCAGCATGGCTATGACAGTGATGAGGAGGTAGACAGTG
AACTGGGCACCTGGGAGCACCAGCTGCGACGCATGGAGATGGACAAGACACGGGAGTGGGCAGA
GCAGCTGACACAGATGGGTCGGGGCAAGCACTTCATCGGTGACTTTCTGCCCCCTGATGAGCTG
GAGAAGTTCATGGAGACCTTCAAGGCCCTGAAGGAGGGCAGAGAGCCAGACTACTCAGAATATA
AGGAGTTTAAGCTGACGGTGGAAAACATTGGCTACCAGATGCTCATGAAGATGGGCTGGAAAGA
GGGCGAGGGGCTGGGCACTGAGGGCCAGGGCATCAAGAACCCAGTGAACAAGGGTGCCACCACA
ATAGATGGAGCTGGCTTTGGCATCGACCGGCCAGCTGAACTCTCCAAGGAGGATGATGAGTACG
AGGCCTTCCGCAAGAGGATGATGCTGGCCTACCGATTCCGGCCCAACCCGCTGAACAACCCCAG
ACGGCCCTACTACTGAATATTCTGGAAACACAAAGTCTACATTCAGATCGGCCATCCTTGGACT
ATGAAATGTTCTGGCATCCATCTCTATCCTGTGGTCACAAGTGTTGTGCTGTGTATTAAAGTCC
CAATGCTCACCTGTCCAGCATTCCAGTTCCTGCTGTTGCCAGAAACCTCTTTTGTCCCTCCTCC
AGTCCCACTGAGGCTCATTGAGTTCACAGTAACTGGAGACCAGCCAGTTGATTCAGACTTTACC
CCAGGCAGAGGAAAAAGAGGCTTCCAAACACTTCATGATATGTGCATGGGCTGGTGTGGACTGG
GCACAGCTGGAGTATGGGTAGGGCCTGTCTAGAGGCAGAGGCCTGGGCTGTCTCATGTATTGCT
CACTGCATAGCTGCAAGAGCCCAGCTGGAGCCCGTGATGGTCAATCTTTGCAGCTTCATCCCAT
TTGTGCTGCCCTGGATCCTCCCCAGACCTCTCCAGCTAGTCAAAGTCCTCAAGAGAATAAGAAT
GATAAATCTGAGTACTCCA

hide sequence

RefSeq Acc Id:

XM_030243755 ⟹ XP_030099615

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,495,435 - 70,524,614 (+)	NCBI
GRCm38	8	70,042,770 - 70,071,964 (+)	NCBI

Sequence:

show sequence

AGAACTGCTACGCAAGGACTTCTGGGTCTTATGGTGTGTGTTCGAAGTGGCTCCGACTGAGGAA
GACTCTGAGGAGAGGATGATACCTCTGCATCATCGTAACTGAGAGTGGCGCCGGAGCATTGTGG
GATTGGATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGTAACATCCCCCGACTTCCCTTCG
CCGCCCGCCTGGGTTCTCGCGACTGCACGTCTCCTGTTCACCCTACTTTCTGTCACGGACCTGA
CACGCGGACTTCTCGCCTCAGCCCCAGGGAAACTTACAGAAAGGCCAATCGGTGGTTTGGGATG
GCACAACCCAAGTCTGGAAAGATGAATATGAACATCCTCCACCAGGAAGAGCTTATTGCTCAGA
AGAAGCGGGAGATTGAGGCCAGAATGGAACAAAAGGCCAGACAGAGTCATGTGCCCAGTCCACA
GCCCCCTCATCCTGGAGAAATTGCTGATGCACATAACTCCTGCATCTCCAACAAGTTTGCCAAT
GATGGCAGCTTCCTGCAGCAGTTTCTGAAGTTACAGAAGGCACAGACAAGCACAGATTCAGCCC
CCAGGGCCCCTCCCAGCATGCCAACACCCAGCTCCTTGAAGAAACCCCTTGTGCTCAGCAAGCG
AACAGGCCTGGGACTGAGTAGCCCAACGGGTCCTGTGAAGAACTACTCACATGCCAAACAGCTG
CCTGTTGCACACCGCCCGAGTGTCTTCCAGTCCCCTGATGATGATGAGGAGGAGGACTATGAGC
AGTGGCTGGAAATCAAAGTTTCACCCCCAGAGGGAGCCGAGACTCGGAGAGTGATAGAGAAGCT
GGCCCGTTTTGTGGCAGAAGGAGGCCCCGAGCTAGAGAAAGTAGCTATGGAGGACTACAAGGAT
AACCCGGCCTTCACATTTTTACATGATAAGAATAGCAGGGAATTCCTGTACTACAGAAGGAAGG
TAGCCGAGATCAGGAAAGAAGCCCAAAAGCCACAGGCAGCCACCCAGAAAGTTTCACCCCCAGA
GGATGAAGAGGCCAAGAACCTTGCAGAAAAGTTGGCCAGGTTCATAGCAGACGGGGGTCCAGAA
GTGGAGACCATCGCCCTCCAGAACAACCGTGAGAATCAGGCCTTCAGTTTTCTCTATGATCCCA
ACAGCCAAGGGTACAGATACTACAGGCAAAAGCTAGATGAGTTCCGGAAAGCCAAGGCGGGCTC
CACAGGCTCCTTCCCTGCTCCTGCTCCCAACCCCAGCCTGCGGCGAAAGTCTGCCCCAGAAGCC
CTGTCAGGGGCTGTGCCCCCCATCACTGCCTGCCCCACTCCAGTGGCCCCAGCACCTGCTGTCA
ACCCCACTCCATCCATCCCTGGGAAGCCCACCGCCACAGCCGCTGTGAAGAGGAAGCGGAAGAG
CCGGTGGGGGCCTGAAGAGGACAAAGTGGAGCTTCCACCTGCTGAACTGGCACAGAGGGACATA
GATGCCTCACCTTCACCTCTTTCAGTTCAGGATCTCAAAGGGCTTGGCTATGAGAAGGGGAAAC
CTGTGGGCCTGGTGGGTGTCACAGAGCTGTCTGATGCACAAAAGAAGCAGCTGAAGGAGCAGCA
GGAGATGCAGCAGATGTATGACATGATTATGCAGCACAAGCGCGCCATGCAAGACATGCAGCTT
CTGTGGGAGAAGGCGCTGCAGCAACACCAGCATGGCTATGACAGTGATGAGGAGGTAGACAGTG
AACTGGGCACCTGGGAGCACCAGCTGCGACGCATGGAGATGGACAAGACACGGGAGTGGGCAGA
GCAGCTGACACAGATGGGTCGGGGCAAGCACTTCATCGGTGACTTTCTGCCCCCTGATGAGCTG
GAGAAGTTCATGGAGACCTTCAAGGCCCTGAAGGAGGGCAGAGAGCCAGACTACTCAGAATATA
AGGAGTTTAAGCTGACGGTGGAAAACATTGGCTACCAGATGCTCATGAAGATGGGCTGGAAAGA
GGGCGAGGGGCTGGGCACTGAGGGCCAGGGCATCAAGAACCCAGTGAACAAGGGTGCCACCACA
ATAGATGGAGCTGGCTTTGGCATCGACCGGCCAGCTGAACTCTCCAAGGAGGATGATGAGTACG
AGGCCTTCCGCAAGAGGATGATGCTGGCCTACCGATTCCGGCCCAACCCGCTGAACAACCCCAG
ACGGCCCTACTACTGAATATTCTGGAAACACAAAGTCTACATTCAGATCGGCCATCCTTGGACT
ATGAAATGTTCTGGCATCCATCTCTATCCTGTGGTCACAAGTGTTGTGCTGTGTATTAAAGTCC
CAATGCTCACCTGTCCAGCA

hide sequence

RefSeq Acc Id:

XM_036154283 ⟹ XP_036010176

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,509,036 - 70,524,614 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001355320	(Get FASTA)	NCBI Sequence Viewer
	NP_081757	(Get FASTA)	NCBI Sequence Viewer
	XP_030099615	(Get FASTA)	NCBI Sequence Viewer
	XP_036010176	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH27188	(Get FASTA)	NCBI Sequence Viewer
	AAI20920	(Get FASTA)	NCBI Sequence Viewer
	AAI20921	(Get FASTA)	NCBI Sequence Viewer
	AAN77124	(Get FASTA)	NCBI Sequence Viewer
	BAE33738	(Get FASTA)	NCBI Sequence Viewer
	BAE37677	(Get FASTA)	NCBI Sequence Viewer
	EDL28774	(Get FASTA)	NCBI Sequence Viewer
	EDL28775	(Get FASTA)	NCBI Sequence Viewer
	EDL28776	(Get FASTA)	NCBI Sequence Viewer
	Q8CH02	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_081757 ⟸ NM_027481

- UniProtKB:

Q8CH02 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSLKMDNRDVAGKANRWFGMAQPKSGKMNMNILHQEELIAQKKREIEARMEQKARQSHVPSPQP
PHPGEIADAHNSCISNKFANDGSFLQQFLKLQKAQTSTDSAPRAPPSMPTPSSLKKPLVLSKRT
GLGLSSPTGPVKNYSHAKQLPVAHRPSVFQSPDDDEEEDYEQWLEIKVSPPEGAETRRVIEKLA
RFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKEAQKPQAATQKVSPPED
EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKAKAGST
GSFPAPAPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPSIPGKPTATAAVKRKRKSR
WGPEEDKVELPPAELAQRDIDASPSPLSVQDLKGLGYEKGKPVGLVGVTELSDAQKKQLKEQQE
MQQMYDMIMQHKRAMQDMQLLWEKALQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQ
LTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEG
EGLGTEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRR
PYY

hide sequence

RefSeq Acc Id:	XP_030099615 ⟸ XM_030243755
- Peptide Label:	isoform X1

RefSeq Acc Id:

NP_001355320 ⟸ NM_001368391

RefSeq Acc Id:

ENSMUSP00000011450 ⟸ ENSMUST00000011450

RefSeq Acc Id:	XP_036010176 ⟸ XM_036154283
- Peptide Label:	isoform X2

Protein Domains

G-patch

Promoters

RGD ID:

8667265

Promoter ID:

EPDNEW_M11664

Type:

multiple initiation site

Name:

Sugp1_1

Description:

Mus musculus SURP and G patch domain containing 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M11665

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,042,787 - 70,042,847	EPDNEW

RGD ID:

8667267

Promoter ID:

EPDNEW_M11665

Type:

multiple initiation site

Name:

Sugp1_2

Description:

Mus musculus SURP and G patch domain containing 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M11664

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,043,034 - 70,043,094	EPDNEW

RGD ID:

6843717

Promoter ID:

MM_KWN:54655

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000011450, NM_001167939, NM_028993, UC009LYL.1, UC009LYM.1, UC009LYN.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	72,565,951 - 72,567,017 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1917866	AgrOrtholog
Ensembl Genes	ENSMUSG00000011306	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000011450	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000011450	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.790	UniProtKB/Swiss-Prot
InterPro	G_patch_dom	UniProtKB/Swiss-Prot
	SUGP1/2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Surp	UniProtKB/Swiss-Prot
	SWAP/Surp_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:70616	UniProtKB/Swiss-Prot
MGD	MGI:1917866	ENTREZGENE
NCBI Gene	70616	ENTREZGENE
PANTHER	PTHR23340	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	G-patch	UniProtKB/Swiss-Prot
	Surp	UniProtKB/Swiss-Prot
PhenoGen	Sugp1	PhenoGen
PROSITE	G_PATCH	UniProtKB/Swiss-Prot
	SURP	UniProtKB/Swiss-Prot
SMART	G_patch	UniProtKB/Swiss-Prot
	SWAP	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF109905	UniProtKB/Swiss-Prot
UniGene	Mm.17665	ENTREZGENE
UniProt	Q3TPQ8_MOUSE	UniProtKB/TrEMBL
	Q8CH02	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q0VAT9	UniProtKB/Swiss-Prot
	Q3U0W3	UniProtKB/Swiss-Prot
	Q8R094	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-27	Sugp1	SURP and G patch domain containing 1	Sf4	splicing factor 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)