Hsp90b1 (heat shock protein 90, beta (Grp94), member 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hsp90b1 (heat shock protein 90, beta (Grp94), member 1) Mus musculus
Analyze
Symbol: Hsp90b1
Name: heat shock protein 90, beta (Grp94), member 1
RGD ID: 1321410
MGI Page MGI
Description: Predicted to enable several functions, including low-density lipoprotein particle receptor binding activity; protein phosphatase binding activity; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within actin rod assembly; cellular response to ATP; and regulation of phosphoprotein phosphatase activity. Located in endoplasmic reticulum and plasma membrane. Part of endoplasmic reticulum chaperone complex. Is expressed in several structures, including brain; integument; lung; metanephros; and pancreas. Orthologous to several human genes including HSP90B1 (heat shock protein 90 beta family member 1); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 94 kDa glucose-regulated protein; end; endoplasmic reticulum resident protein 99; endoplasmin; ERp; ERp99; gp9; gp96; GRP; GRP94; heat shock protein 90 kDa beta member 1; polymorphic tumor rejection antigen 1; TA-3; Tar; Targ2; Tr; Tra; Tra-1; Tra1; transforming growth factor alpha regulated gene 2; tumor rejection antigen (gp96) 1; tumor rejection antigen gp96
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18954  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391086,526,705 - 86,541,308 (-)NCBIGRCm39mm39
GRCm39 Ensembl1086,526,073 - 86,541,373 (-)Ensembl
GRCm381086,690,841 - 86,705,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1086,690,209 - 86,705,509 (-)EnsemblGRCm38mm10GRCm38
MGSCv371086,153,586 - 86,168,189 (-)NCBIGRCm37mm9NCBIm37
MGSCv361086,120,640 - 86,135,243 (-)NCBImm8
Celera1088,669,594 - 88,684,200 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
1H-pyrazole  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP,ISO)
2-deoxy-D-glucose  (ISO)
2-methoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-aminophenol  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-(N,N-hexamethylene)amiloride  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (EXP,ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucosamine  (EXP,ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
apigenin  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
azoxystrobin  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
beta-D-glucosamine  (EXP,ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
brefeldin A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloroacetic acid  (EXP)
chloropicrin  (ISO)
cis-caffeic acid  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (EXP,ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP,ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
Dienochlor  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (EXP)
diuron  (ISO)
dopamine  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fenofibrate  (EXP)
fenpyroximate  (ISO)
fenvalerate  (ISO)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (EXP,ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP,ISO)
glafenine  (ISO)
glucose  (EXP,ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (EXP)
lithium atom  (ISO)
lithium hydride  (ISO)
manganese(II) chloride  (ISO)
meglumine amidotrizoate  (ISO)
menadione  (EXP)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methomyl  (ISO)
methotrexate  (EXP)
methoxyacetic acid  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
morphine  (ISO)
N,N-dimethylformamide  (EXP,ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosomorpholine  (ISO)
oxidopamine  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
poly(propylene imine) macromolecule  (ISO)
potassium dichromate  (ISO)
procymidone  (ISO)
progesterone  (EXP)
Propiverine  (ISO)
prostaglandin A1  (EXP)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
streptozocin  (EXP)
succimer  (EXP)
T-2 toxin  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
thapsigargin  (EXP,ISO)
titanium dioxide  (EXP)
trans-caffeic acid  (ISO)
trichostatin A  (ISO)
tungsten  (EXP)
tunicamycin  (EXP,ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc oxide  (EXP)
zinc(0)  (ISO)

References

Additional References at PubMed
PMID:1692794   PMID:1981053   PMID:2438686   PMID:2546060   PMID:2768254   PMID:2796999   PMID:3036833   PMID:3410508   PMID:3612811   PMID:7558020   PMID:7654366   PMID:7835907  
PMID:7970703   PMID:8179819   PMID:8460400   PMID:8570653   PMID:8747928   PMID:8835541   PMID:8889548   PMID:9363855   PMID:10196250   PMID:10349636   PMID:10441734   PMID:10444069  
PMID:10839811   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11130978   PMID:11265634   PMID:11568360   PMID:11739487   PMID:11884472   PMID:11943765   PMID:12135983   PMID:12189140  
PMID:12244140   PMID:12446445   PMID:12461080   PMID:12475965   PMID:12477932   PMID:12617806   PMID:12805368   PMID:12904583   PMID:14610273   PMID:14668429   PMID:15034032   PMID:15082773  
PMID:15107540   PMID:15128793   PMID:15252132   PMID:15306695   PMID:15782199   PMID:15827139   PMID:15864309   PMID:16141072   PMID:16141073   PMID:16601230   PMID:16604525   PMID:16754684  
PMID:16847323   PMID:17010336   PMID:17090218   PMID:17275357   PMID:17294405   PMID:17411420   PMID:17464327   PMID:17525271   PMID:17634284   PMID:17671676   PMID:17913437   PMID:18001291  
PMID:18195024   PMID:18307411   PMID:18340425   PMID:18411291   PMID:18509083   PMID:18776938   PMID:18799693   PMID:18940591   PMID:19000718   PMID:19000834   PMID:19125190   PMID:19136429  
PMID:19158397   PMID:19265198   PMID:19553200   PMID:19839010   PMID:19914304   PMID:19965672   PMID:20159978   PMID:20178780   PMID:20224597   PMID:20352117   PMID:20410492   PMID:20510162  
PMID:20520781   PMID:20865800   PMID:21048103   PMID:21093319   PMID:21208614   PMID:21267068   PMID:21327095   PMID:21358806   PMID:21538020   PMID:21565611   PMID:21576699   PMID:21647226  
PMID:21677750   PMID:21739154   PMID:21795745   PMID:21873635   PMID:22109526   PMID:22223641   PMID:22292497   PMID:22421546   PMID:22532561   PMID:22554506   PMID:22649033   PMID:22724016  
PMID:22745161   PMID:22854046   PMID:22876182   PMID:22925884   PMID:23055941   PMID:23553495   PMID:23572575   PMID:23572582   PMID:23671277   PMID:23740953   PMID:23859598   PMID:23874845  
PMID:24024552   PMID:24027047   PMID:24322981   PMID:24457600   PMID:24694561   PMID:24808359   PMID:24888588   PMID:24953136   PMID:25220589   PMID:25332179   PMID:25607841   PMID:25693689  
PMID:26365983   PMID:26396174   PMID:26494538   PMID:26628375   PMID:26816051   PMID:26910913   PMID:26945068   PMID:27034005   PMID:27183126   PMID:27417661   PMID:27561680   PMID:27626668  
PMID:28056051   PMID:28378742   PMID:28474670   PMID:28526855   PMID:28634551   PMID:29180572   PMID:29272356   PMID:29391475   PMID:29447283   PMID:30188326   PMID:30196744   PMID:30209191  
PMID:30333137   PMID:30543055   PMID:30550785   PMID:30595499   PMID:30713523   PMID:30787103   PMID:31018807   PMID:31025379   PMID:31040226   PMID:31162944   PMID:31358658   PMID:31395819  
PMID:32208002   PMID:32325033   PMID:32968282   PMID:33211673   PMID:33811917   PMID:34072833  


Genomics

Comparative Map Data
Hsp90b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391086,526,705 - 86,541,308 (-)NCBIGRCm39mm39
GRCm39 Ensembl1086,526,073 - 86,541,373 (-)Ensembl
GRCm381086,690,841 - 86,705,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1086,690,209 - 86,705,509 (-)EnsemblGRCm38mm10GRCm38
MGSCv371086,153,586 - 86,168,189 (-)NCBIGRCm37mm9NCBIm37
MGSCv361086,120,640 - 86,135,243 (-)NCBImm8
Celera1088,669,594 - 88,684,200 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.05NCBI
HSP90B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12103,930,107 - 103,953,931 (+)EnsemblGRCh38hg38GRCh38
GRCh3812103,930,410 - 103,947,926 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,324,188 - 104,341,704 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612102,848,319 - 102,865,833 (+)NCBINCBI36hg18NCBI36
Build 3412102,826,655 - 102,844,170NCBI
Celera12103,987,945 - 104,005,473 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,383,834 - 101,401,444 (+)NCBIHuRef
CHM1_112104,290,083 - 104,307,660 (+)NCBICHM1_1
Hsp90b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2721,110,431 - 21,124,762 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl721,110,457 - 21,124,788 (-)Ensembl
Rnor_6.0727,226,570 - 27,240,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,226,569 - 27,240,533 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,345,730 - 27,359,757 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,332,986 - 23,347,525 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1723,353,261 - 23,367,796 (-)NCBI
Celera718,290,242 - 18,304,551 (-)NCBICelera
Cytogenetic Map7q13NCBI
Hsp90b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,629,691 - 38,645,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,629,691 - 38,645,202 (+)NCBIChiLan1.0ChiLan1.0
HSP90B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112104,901,997 - 104,919,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12104,901,997 - 104,919,329 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012101,506,845 - 101,524,407 (+)NCBIMhudiblu_PPA_v0panPan3
HSP90B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,456,793 - 42,474,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,456,764 - 42,579,311 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1542,826,278 - 42,843,622 (+)NCBI
ROS_Cfam_1.01543,114,295 - 43,131,887 (+)NCBI
UMICH_Zoey_3.11542,380,743 - 42,398,025 (+)NCBI
UNSW_CanFamBas_1.01542,479,226 - 42,496,568 (+)NCBI
UU_Cfam_GSD_1.01542,750,406 - 42,767,726 (+)NCBI
Hsp90b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,503,494 - 17,517,769 (-)NCBI
SpeTri2.0NW_00493649210,513,908 - 10,528,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSP90B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,511,507 - 80,531,005 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,511,513 - 80,531,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2584,016,174 - 84,083,931 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSP90B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,119,268 - 99,139,988 (+)NCBI
ChlSab1.1 Ensembl1199,119,224 - 99,139,722 (+)Ensembl
Vero_WHO_p1.0NW_023666037145,859,568 - 145,877,331 (-)NCBI
Hsp90b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247504,738,563 - 4,752,227 (-)NCBI

Position Markers
RH129351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381086,690,951 - 86,691,131UniSTSGRCm38
MGSCv371086,153,696 - 86,153,876UniSTSGRCm37
Celera1088,669,704 - 88,669,884UniSTS
Cytogenetic Map10C1UniSTS
cM Map1049.0UniSTS
J03297  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381086,690,867 - 86,691,019UniSTSGRCm38
GRCm381165,832,604 - 165,832,770UniSTSGRCm38
MGSCv371167,762,735 - 167,762,901UniSTSGRCm37
MGSCv371086,153,612 - 86,153,764UniSTSGRCm37
Celera1088,669,620 - 88,669,772UniSTS
Celera1168,277,540 - 168,277,706UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map1G-HUniSTS
cM Map1049.0UniSTS
Whitehead_YAC2 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082242550116242550Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8265510491020240Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108299286692333194Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084243786122205623Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84243786122205623Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84243786122205623Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084243786122205623Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084243786122205623Mouse
14700795Mencq7_mmeniscus calcification QTL 7 (mouse)108547800086812000Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085619118118661448Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir223mmu-miR-223-3pOncomiRDBexternal_infoNANA23208072

Predicted Target Of
Summary Value
Count of predictions:429
Count of miRNA genes:328
Interacting mature miRNAs:359
Transcripts:ENSMUST00000020238, ENSMUST00000129178, ENSMUST00000129413, ENSMUST00000134515, ENSMUST00000146897
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J03297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M16370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M29652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020238   ⟹   ENSMUSP00000020238
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1086,526,704 - 86,541,373 (-)Ensembl
GRCm38.p6 Ensembl1086,690,840 - 86,705,509 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1086,526,073 - 86,537,832 (-)Ensembl
GRCm38.p6 Ensembl1086,690,209 - 86,701,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129413   ⟹   ENSMUSP00000122710
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1086,528,265 - 86,534,302 (-)Ensembl
GRCm38.p6 Ensembl1086,692,401 - 86,698,438 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1086,529,885 - 86,531,585 (-)Ensembl
GRCm38.p6 Ensembl1086,694,021 - 86,695,721 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1086,537,810 - 86,538,957 (-)Ensembl
GRCm38.p6 Ensembl1086,701,946 - 86,703,093 (-)Ensembl
RefSeq Acc Id: NM_011631   ⟹   NP_035761
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391086,526,705 - 86,541,308 (-)NCBI
GRCm381086,690,841 - 86,705,444 (-)ENTREZGENE
MGSCv371086,153,586 - 86,168,189 (-)RGD
Celera1088,669,594 - 88,684,200 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035761   ⟸   NM_011631
- Peptide Label: precursor
- UniProtKB: P08113 (UniProtKB/Swiss-Prot),   Q3UAD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020238   ⟸   ENSMUST00000020238
RefSeq Acc Id: ENSMUSP00000122710   ⟸   ENSMUST00000129413
Protein Domains
HATPase_c

Promoters
RGD ID:6848569
Promoter ID:MM_TRO:1076
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Liver
Transcripts:MTR000888.10.1646.5,   MTR000888.10.1646.6
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,154,331 - 86,154,831 (-)MPROMDB
RGD ID:6819453
Promoter ID:MM_KWN:5235
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000048700
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,158,041 - 86,159,112 (-)MPROMDB
RGD ID:6819455
Promoter ID:MM_KWN:5236
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000048699
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,160,961 - 86,162,102 (-)MPROMDB
RGD ID:6819454
Promoter ID:MM_KWN:5237
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B6
Transcripts:OTTMUST00000048698
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,164,256 - 86,165,452 (-)MPROMDB
RGD ID:6819457
Promoter ID:MM_KWN:5238
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   MEF_B6
Transcripts:OTTMUST00000048701
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,165,836 - 86,166,782 (-)MPROMDB
RGD ID:6819456
Promoter ID:MM_KWN:5239
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000061458,   NM_001003910,   NM_001003939,   OTTMUST00000048697
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361086,167,121 - 86,169,197 (-)MPROMDB
RGD ID:8672948
Promoter ID:EPDNEW_M14504
Type:initiation region
Name:Hsp90b1_1
Description:Mus musculus heat shock protein 90, beta , member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381086,705,463 - 86,705,523EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98817 AgrOrtholog
Ensembl Genes ENSMUSG00000020048 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020238 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000122710 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020238 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000129413 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Heat_shock_protein_90_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP90_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hsp90_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hsp90_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98817 ENTREZGENE
NCBI Gene 22027 ENTREZGENE
PANTHER PTHR11528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HATPase_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hsp90b1 PhenoGen
PIRSF Hsp90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS HEATSHOCK90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ER_TARGET UniProtKB/Swiss-Prot
  HSP90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HATPase_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF110942 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55874 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ENPL_MOUSE UniProtKB/Swiss-Prot
  F7C312_MOUSE UniProtKB/TrEMBL
  P08113 ENTREZGENE
  Q3TUD6_MOUSE UniProtKB/TrEMBL
  Q3UAD6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UBU0_MOUSE UniProtKB/TrEMBL
  Q8C2R2_MOUSE UniProtKB/TrEMBL
  Q8CCY5_MOUSE UniProtKB/TrEMBL
  Q91V38_MOUSE UniProtKB/TrEMBL
  Q9CW12_MOUSE UniProtKB/TrEMBL
UniProt Secondary P11427 UniProtKB/Swiss-Prot