Zfp871 (zinc finger protein 871) - Rat Genome Database

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Gene: Zfp871 (zinc finger protein 871) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp871
Name: zinc finger protein 871
RGD ID: 1321319
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; brain; branchial arch; cardiovascular system; and genitourinary system.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732483N19; 9030612M13Rik; AI118577; AI265322; mKIAA3006
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Pseudogenes: Gm18242  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,984,470 - 33,007,261 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,984,470 - 33,007,261 (-)EnsemblGRCm39 Ensembl
GRCm381732,765,496 - 32,788,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,765,496 - 32,788,287 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,902,441 - 32,925,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361732,511,751 - 32,526,046 (-)NCBIMGSCv36mm8
Celera1733,678,378 - 33,701,162 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18287559   PMID:18799693   PMID:20059953   PMID:20412781   PMID:21677750   PMID:21873635   PMID:24194600   PMID:34257081   PMID:34321999  


Genomics

Variants

.
Variants in Zfp871
1008 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1257
Count of miRNA genes:582
Interacting mature miRNAs:689
Transcripts:ENSMUST00000057501, ENSMUST00000159086, ENSMUST00000168337
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse

Markers in Region
AI265322  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,765,886 - 32,765,966UniSTSGRCm38
MGSCv371732,902,831 - 32,902,911UniSTSGRCm37
Celera1733,678,768 - 33,678,848UniSTS
Cytogenetic Map17B1UniSTS
Whitehead/MRC_RH17387.64UniSTS
AI118577  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,773,446 - 32,773,696UniSTSGRCm38
MGSCv371732,910,391 - 32,910,641UniSTSGRCm37
Celera1733,686,321 - 33,686,571UniSTS
Cytogenetic Map17B1UniSTS
Whitehead/MRC_RH17416.61UniSTS
UniSTS:237619  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,767,836 - 32,768,210UniSTSGRCm38
MGSCv371732,904,781 - 32,905,155UniSTSGRCm37
Celera1733,680,718 - 33,681,092UniSTS
Cytogenetic Map17B1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000057501   ⟹   ENSMUSP00000050501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,992,226 - 33,006,521 (-)Ensembl
GRCm38.p6 Ensembl1732,773,252 - 32,787,547 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159086   ⟹   ENSMUSP00000127178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,984,470 - 33,007,261 (-)Ensembl
GRCm38.p6 Ensembl1732,765,496 - 32,788,287 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,994,151 - 33,007,224 (-)Ensembl
GRCm38.p6 Ensembl1732,775,177 - 32,788,250 (-)Ensembl
RefSeq Acc Id: NM_001346705   ⟹   NP_001333634
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391732,984,470 - 33,006,521 (-)NCBI
GRCm381732,765,496 - 32,787,547 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172458   ⟹   NP_766046
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391732,984,470 - 33,007,261 (-)NCBI
GRCm381732,765,496 - 32,788,287 (-)NCBI
MGSCv371732,902,441 - 32,925,232 (-)RGD
Celera1733,678,378 - 33,701,162 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036160429   ⟹   XP_036016322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391732,984,470 - 33,007,261 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766046   ⟸   NM_172458
- Peptide Label: isoform 1
- UniProtKB: G5E905 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333634   ⟸   NM_001346705
- Peptide Label: isoform 2
- UniProtKB: Q80XN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000127178   ⟸   ENSMUST00000159086
RefSeq Acc Id: ENSMUSP00000050501   ⟸   ENSMUST00000057501
RefSeq Acc Id: XP_036016322   ⟸   XM_036160429
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G5E905-F1-model_v2 AlphaFold G5E905 1-615 view protein structure

Promoters
RGD ID:13675534
Promoter ID:EPDNEW_M21916
Type:initiation region
Name:Zfp871_1
Description:Mus musculus zinc finger protein 871 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381732,788,274 - 32,788,334EPDNEW
RGD ID:6828944
Promoter ID:MM_KWN:23063
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_172458
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361732,924,909 - 32,925,409 (-)MPROMDB
RGD ID:6828943
Promoter ID:MM_KWN:23062
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:ENSMUST00000057501
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361732,925,056 - 32,925,556 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921793 AgrOrtholog
Ensembl Genes ENSMUSG00000024298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057501 ENTREZGENE
  ENSMUST00000057501.9 UniProtKB/TrEMBL
  ENSMUST00000159086 ENTREZGENE
  ENSMUST00000159086.10 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:208292 UniProtKB/TrEMBL
MGD MGI:1921793 ENTREZGENE
NCBI Gene 208292 ENTREZGENE
PANTHER REDUCED EXPRESSION 2-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 101 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 845-LIKE UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Zfp871 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt G5E905 ENTREZGENE, UniProtKB/TrEMBL
  Q80T67_MOUSE UniProtKB/TrEMBL
  Q80XN4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BIC1_MOUSE UniProtKB/TrEMBL