Dclre1b (DNA cross-link repair 1B) - Rat Genome Database

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Gene: Dclre1b (DNA cross-link repair 1B) Mus musculus
Analyze
Symbol: Dclre1b
Name: DNA cross-link repair 1B
RGD ID: 1321193
MGI Page MGI
Description: Enables 5'-3' exonuclease activity. Involved in protection from non-homologous end joining at telomere; telomeric 3' overhang formation; and telomeric loop formation. Located in chromosome, telomeric region. Is expressed in central nervous system and sensory organ. Human ortholog(s) of this gene implicated in dyskeratosis congenita. Orthologous to human DCLRE1B (DNA cross-link repair 1B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5' exonuclease Apollo; AI452214; Apollo; beta-lactamase MBLAC2; DNA cross-link repair 1B protein; DNA cross-link repair 1B, PSO2 homolog; mSNM; mSNM1B; SN; SNM1 homolog B; SNMIB
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,707,921 - 103,716,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,707,921 - 103,716,760 (-)EnsemblGRCm39 Ensembl
GRCm383103,800,605 - 103,809,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,800,605 - 103,809,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv373103,604,528 - 103,613,310 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,929,666 - 103,938,448 (-)NCBIMGSCv36mm8
Celera3106,003,520 - 106,012,334 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10848582   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466305   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:18848520   PMID:20551906   PMID:20619712   PMID:20854421   PMID:21873635   PMID:22748632   PMID:26496610  


Genomics

Comparative Map Data
Dclre1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,707,921 - 103,716,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,707,921 - 103,716,760 (-)EnsemblGRCm39 Ensembl
GRCm383103,800,605 - 103,809,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,800,605 - 103,809,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv373103,604,528 - 103,613,310 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,929,666 - 103,938,448 (-)NCBIMGSCv36mm8
Celera3106,003,520 - 106,012,334 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.52NCBI
DCLRE1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,904,619 - 113,914,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,904,619 - 113,914,086 (+)EnsemblGRCh38hg38GRCh38
GRCh371114,447,241 - 114,456,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,249,561 - 114,258,217 (+)NCBINCBI36Build 36hg18NCBI36
Build 341114,160,079 - 114,168,734NCBI
Celera1112,677,139 - 112,685,932 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1112,306,040 - 112,314,841 (+)NCBIHuRef
CHM1_11114,562,775 - 114,571,568 (+)NCBICHM1_1
T2T-CHM13v2.01113,916,281 - 113,925,748 (+)NCBIT2T-CHM13v2.0
Dclre1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82193,998,350 - 194,006,873 (-)NCBIGRCr8
mRatBN7.22191,309,909 - 191,318,399 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,309,913 - 191,318,423 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2198,906,905 - 198,915,386 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,779,634 - 196,788,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02191,596,608 - 191,605,089 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,285,085 - 206,293,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,285,089 - 206,293,599 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,708,795 - 225,717,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,025,718 - 199,034,230 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12198,988,471 - 198,996,984 (-)NCBI
Celera2183,781,669 - 183,790,181 (-)NCBICelera
Cytogenetic Map2q34NCBI
Dclre1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543517,173,975 - 17,179,986 (+)NCBIChiLan1.0ChiLan1.0
DCLRE1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21106,564,031 - 106,571,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11106,157,486 - 106,164,503 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0188,643,664 - 88,651,962 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11123,692,921 - 123,701,403 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1123,692,915 - 123,701,403 (-)Ensemblpanpan1.1panPan2
DCLRE1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,711,267 - 51,716,806 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,711,284 - 51,716,345 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1751,362,655 - 51,368,194 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01752,589,546 - 52,595,104 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1752,589,468 - 52,595,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11751,596,829 - 51,602,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01751,665,109 - 51,670,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,237,640 - 52,243,174 (+)NCBIUU_Cfam_GSD_1.0
DCLRE1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4106,646,011 - 106,656,452 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14106,646,591 - 106,656,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,854,880 - 116,861,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCLRE1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,750,106 - 19,757,190 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2019,748,898 - 19,756,901 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603822,518,633 - 22,527,397 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Dclre1b
33 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3320
Count of miRNA genes:687
Interacting mature miRNAs:900
Transcripts:ENSMUST00000029435, ENSMUST00000063502, ENSMUST00000106832, ENSMUST00000106834, ENSMUST00000128716, ENSMUST00000147894
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
8655600Cia5b_mcollagen induced arthritis QTL 5b (mouse)Not determined3100655184103744779Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse

Markers in Region
AI452214  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383103,802,956 - 103,803,041UniSTSGRCm38
MGSCv373103,606,879 - 103,606,964UniSTSGRCm37
Celera3106,005,889 - 106,005,974UniSTS
Cytogenetic Map3F2.2UniSTS
Whitehead/MRC_RH31217.34UniSTS
Dclre1b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F2.2UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ559794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA317555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA548899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029435   ⟹   ENSMUSP00000029435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,707,921 - 103,716,760 (-)Ensembl
GRCm38.p6 Ensembl3103,800,605 - 103,809,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000063502   ⟹   ENSMUSP00000067695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,707,921 - 103,716,694 (-)Ensembl
GRCm38.p6 Ensembl3103,800,605 - 103,809,378 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106832   ⟹   ENSMUSP00000102445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,713,250 - 103,716,705 (-)Ensembl
GRCm38.p6 Ensembl3103,805,934 - 103,809,389 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106834   ⟹   ENSMUSP00000102447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,708,405 - 103,716,727 (-)Ensembl
GRCm38.p6 Ensembl3103,801,089 - 103,809,411 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128716   ⟹   ENSMUSP00000121063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,711,343 - 103,716,508 (-)Ensembl
GRCm38.p6 Ensembl3103,804,027 - 103,809,192 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,710,201 - 103,716,641 (-)Ensembl
GRCm38.p6 Ensembl3103,802,885 - 103,809,325 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198752   ⟹   ENSMUSP00000143067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,710,219 - 103,715,496 (-)Ensembl
GRCm38.p6 Ensembl3103,802,903 - 103,808,180 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3103,710,915 - 103,714,952 (-)Ensembl
GRCm38.p6 Ensembl3103,803,599 - 103,807,636 (-)Ensembl
RefSeq Acc Id: NM_001025312   ⟹   NP_001020483
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,707,921 - 103,716,703 (-)NCBI
GRCm383103,800,605 - 103,809,387 (-)ENTREZGENE
MGSCv373103,604,528 - 103,613,310 (-)RGD
Celera3106,003,520 - 106,012,334 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133865   ⟹   NP_598626
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,707,921 - 103,716,703 (-)NCBI
GRCm383103,800,605 - 103,809,387 (-)ENTREZGENE
MGSCv373103,604,528 - 103,613,310 (-)RGD
Celera3106,003,520 - 106,012,334 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001020483   ⟸   NM_001025312
- Peptide Label: isoform b
- UniProtKB: Q8C7W7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_598626   ⟸   NM_133865
- Peptide Label: isoform a
- UniProtKB: Q8BQS8 (UniProtKB/Swiss-Prot),   Q8BN95 (UniProtKB/Swiss-Prot),   Q6NXL4 (UniProtKB/Swiss-Prot),   Q3UV92 (UniProtKB/Swiss-Prot),   Q3UUC7 (UniProtKB/Swiss-Prot),   Q3U4P2 (UniProtKB/Swiss-Prot),   B0V3P0 (UniProtKB/Swiss-Prot),   B0V3N9 (UniProtKB/Swiss-Prot),   A0JLW2 (UniProtKB/Swiss-Prot),   Q921S0 (UniProtKB/Swiss-Prot),   Q8C7W7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143067   ⟸   ENSMUST00000198752
RefSeq Acc Id: ENSMUSP00000029435   ⟸   ENSMUST00000029435
RefSeq Acc Id: ENSMUSP00000102445   ⟸   ENSMUST00000106832
RefSeq Acc Id: ENSMUSP00000102447   ⟸   ENSMUST00000106834
RefSeq Acc Id: ENSMUSP00000121063   ⟸   ENSMUST00000128716
RefSeq Acc Id: ENSMUSP00000067695   ⟸   ENSMUST00000063502

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C7W7-F1-model_v2 AlphaFold Q8C7W7 1-541 view protein structure

Promoters
RGD ID:6833439
Promoter ID:MM_KWN:35610
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000106824,   ENSMUST00000106834,   NM_001025312,   NM_001163552,   NM_001163553,   OTTMUST00000053663,   OTTMUST00000053666,   OTTMUST00000053668,   OTTMUST00000053679,   UC008QTP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363103,613,466 - 103,614,267 (+)MPROMDB
RGD ID:6881876
Promoter ID:EPDNEW_M4389
Type:initiation region
Name:Dclre1b_1
Description:Mus musculus DNA cross-link repair 1B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4390  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383103,809,289 - 103,809,349EPDNEW
RGD ID:6881878
Promoter ID:EPDNEW_M4390
Type:initiation region
Name:Dclre1b_2
Description:Mus musculus DNA cross-link repair 1B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4389  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383103,809,396 - 103,809,456EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2156057 AgrOrtholog
Ensembl Genes ENSMUSG00000027845 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029435 ENTREZGENE
  ENSMUST00000029435.15 UniProtKB/Swiss-Prot
  ENSMUST00000063502 ENTREZGENE
  ENSMUST00000063502.13 UniProtKB/Swiss-Prot
  ENSMUST00000106832.2 UniProtKB/Swiss-Prot
  ENSMUST00000106834.8 UniProtKB/Swiss-Prot
  ENSMUST00000128716.2 UniProtKB/TrEMBL
  ENSMUST00000198752.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12650 UniProtKB/Swiss-Prot
  3.60.15.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DRMBL UniProtKB/Swiss-Prot
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:140917 UniProtKB/Swiss-Prot
MGD MGI:2156057 ENTREZGENE
NCBI Gene 140917 ENTREZGENE
PANTHER 5' EXONUCLEASE APOLLO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DRMBL UniProtKB/Swiss-Prot
PharmGKB DCLRE1B RGD
PhenoGen Dclre1b PhenoGen
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JF86_MOUSE UniProtKB/TrEMBL
  A0JLW2 ENTREZGENE
  B0V3N9 ENTREZGENE
  B0V3P0 ENTREZGENE
  D6RFP8_MOUSE UniProtKB/TrEMBL
  DCR1B_MOUSE UniProtKB/Swiss-Prot
  Q3U4P2 ENTREZGENE
  Q3UUC7 ENTREZGENE
  Q3UV92 ENTREZGENE
  Q6NXL4 ENTREZGENE
  Q8BN95 ENTREZGENE
  Q8BQS8 ENTREZGENE
  Q8C7W7 ENTREZGENE
  Q921S0 ENTREZGENE
UniProt Secondary A0JLW2 UniProtKB/Swiss-Prot
  B0V3N9 UniProtKB/Swiss-Prot
  B0V3P0 UniProtKB/Swiss-Prot
  Q3U4P2 UniProtKB/Swiss-Prot
  Q3UUC7 UniProtKB/Swiss-Prot
  Q3UV92 UniProtKB/Swiss-Prot
  Q6NXL4 UniProtKB/Swiss-Prot
  Q8BN95 UniProtKB/Swiss-Prot
  Q8BQS8 UniProtKB/Swiss-Prot
  Q921S0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dclre1b  DNA cross-link repair 1B    DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED