Nif3l1 (Ngg1 interacting factor 3-like 1 (S. pombe)) - Rat Genome Database

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Gene: Nif3l1 (Ngg1 interacting factor 3-like 1 (S. pombe)) Mus musculus
Analyze
Symbol: Nif3l1
Name: Ngg1 interacting factor 3-like 1 (S. pombe)
RGD ID: 1321171
MGI Page MGI
Description: Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and identical protein binding activity. Involved in negative regulation of transcription by RNA polymerase II and neuron differentiation. Located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; genitourinary system; liver; lung; and spleen. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 1110030G24Rik; GTP cyclohydrolase I; MGC107114; Ngg1 interacting factor 3 homolog-like 1; NIF3-like protein 1; putative GTP cyclohydrolase 1 type 2 Nif3l1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,484,310 - 58,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,484,310 - 58,520,975 (+)EnsemblGRCm39 Ensembl
GRCm38158,445,151 - 58,462,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,445,151 - 58,481,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,504,478 - 58,519,120 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,390,174 - 58,406,822 (+)NCBIMGSCv36mm8
Celera158,965,880 - 58,980,507 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,ISO)
mitochondrion  (HDA,IBA)
nucleus  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11124544   PMID:12477932   PMID:12522100   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:18614015   PMID:18799693   PMID:21677750   PMID:21873635   PMID:32325033  


Genomics

Comparative Map Data
Nif3l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,484,310 - 58,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,484,310 - 58,520,975 (+)EnsemblGRCm39 Ensembl
GRCm38158,445,151 - 58,462,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,445,151 - 58,481,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,504,478 - 58,519,120 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,390,174 - 58,406,822 (+)NCBIMGSCv36mm8
Celera158,965,880 - 58,980,507 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.1NCBI
NIF3L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,889,327 - 200,903,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,889,327 - 200,903,938 (+)EnsemblGRCh38hg38GRCh38
GRCh372201,754,050 - 201,768,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,462,391 - 201,476,898 (+)NCBINCBI36Build 36hg18NCBI36
Build 342201,579,651 - 201,594,159NCBI
Celera2195,508,680 - 195,523,285 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,605,423 - 193,620,028 (+)NCBIHuRef
CHM1_12201,760,035 - 201,774,640 (+)NCBICHM1_1
T2T-CHM13v2.02201,372,777 - 201,387,382 (+)NCBIT2T-CHM13v2.0
Nif3l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,474,286 - 67,494,350 (+)NCBIGRCr8
mRatBN7.2959,980,101 - 60,001,490 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl959,979,799 - 60,000,131 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,474,054 - 68,494,582 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,589,984 - 73,610,512 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,908,058 - 71,928,587 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,329,143 - 65,349,280 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,331,290 - 65,349,141 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0965,136,444 - 65,156,450 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4957,105,338 - 57,122,976 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1957,252,319 - 57,269,957 (+)NCBI
Celera957,425,453 - 57,443,091 (+)NCBICelera
Cytogenetic Map9q31NCBI
Nif3l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403628,924 - 640,703 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955403628,069 - 640,703 (-)NCBIChiLan1.0ChiLan1.0
NIF3L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,514,438 - 103,530,671 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,529,437 - 103,545,677 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B88,145,137 - 88,161,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B206,303,865 - 206,319,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,303,931 - 206,319,810 (+)Ensemblpanpan1.1panPan2
NIF3L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,082,823 - 10,136,647 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,083,104 - 10,107,050 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,967,996 - 11,010,341 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0379,988,229 - 10,030,627 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl379,988,281 - 10,014,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1379,969,715 - 10,012,079 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0379,947,554 - 9,989,894 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0379,941,454 - 9,983,823 (+)NCBIUU_Cfam_GSD_1.0
Nif3l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,224,493 - 158,242,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726195,010 - 232,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936726194,873 - 212,487 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIF3L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,583,809 - 104,606,966 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,583,736 - 104,606,507 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,686,849 - 115,691,851 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIF3L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,545,392 - 86,593,386 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,545,014 - 86,564,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040112,824,954 - 112,872,111 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nif3l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624889273,397 - 282,426 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624889273,072 - 284,777 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nif3l1
503 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1217
Count of miRNA genes:603
Interacting mature miRNAs:735
Transcripts:ENSMUST00000087521, ENSMUST00000114337, ENSMUST00000129759, ENSMUST00000140723, ENSMUST00000151272, ENSMUST00000171597
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5772827662946882Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
Nif3l1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B2UniSTS
Cytogenetic Map1CUniSTS
cM Map1 UniSTS
AW047618  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,461,314 - 58,461,413UniSTSGRCm38
MGSCv37158,518,158 - 58,518,257UniSTSGRCm37
Celera158,979,545 - 58,979,644UniSTS
Cytogenetic Map1CUniSTS
Whitehead/MRC_RH1886.2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000087521   ⟹   ENSMUSP00000084799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,484,310 - 58,502,615 (+)Ensembl
GRCm38.p6 Ensembl158,445,151 - 58,463,456 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114337   ⟹   ENSMUSP00000109976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,484,426 - 58,520,975 (+)Ensembl
GRCm38.p6 Ensembl158,445,267 - 58,481,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129759   ⟹   ENSMUSP00000124713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,484,787 - 58,489,666 (+)Ensembl
GRCm38.p6 Ensembl158,445,628 - 58,450,507 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,488,326 - 58,496,959 (+)Ensembl
GRCm38.p6 Ensembl158,449,167 - 58,457,800 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151272   ⟹   ENSMUSP00000123553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,484,888 - 58,487,209 (+)Ensembl
GRCm38.p6 Ensembl158,445,729 - 58,448,050 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171597   ⟹   ENSMUSP00000127501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,486,790 - 58,501,425 (+)Ensembl
GRCm38.p6 Ensembl158,447,631 - 58,462,266 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,492,563 - 58,495,347 (+)Ensembl
GRCm38.p6 Ensembl158,453,404 - 58,456,188 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,496,844 - 58,500,543 (+)Ensembl
GRCm38.p6 Ensembl158,457,685 - 58,461,384 (+)Ensembl
RefSeq Acc Id: NM_022988   ⟹   NP_075364
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,484,310 - 58,501,435 (+)NCBI
GRCm38158,445,151 - 58,462,276 (+)NCBI
MGSCv37158,504,478 - 58,519,120 (+)RGD
Celera158,965,880 - 58,980,507 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496186   ⟹   XP_006496249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,484,776 - 58,500,684 (+)NCBI
GRCm38158,445,617 - 58,461,525 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_075364   ⟸   NM_022988
- UniProtKB: Q6P1B7 (UniProtKB/Swiss-Prot),   Q9D098 (UniProtKB/Swiss-Prot),   Q9EQ80 (UniProtKB/Swiss-Prot),   Q3V2R8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496249   ⟸   XM_006496186
- Peptide Label: isoform X1
- UniProtKB: Q6P1B7 (UniProtKB/Swiss-Prot),   Q9D098 (UniProtKB/Swiss-Prot),   Q9EQ80 (UniProtKB/Swiss-Prot),   Q3V2R8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000127501   ⟸   ENSMUST00000171597
RefSeq Acc Id: ENSMUSP00000084799   ⟸   ENSMUST00000087521
RefSeq Acc Id: ENSMUSP00000123553   ⟸   ENSMUST00000151272
RefSeq Acc Id: ENSMUSP00000124713   ⟸   ENSMUST00000129759
RefSeq Acc Id: ENSMUSP00000109976   ⟸   ENSMUST00000114337

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQ80-F1-model_v2 AlphaFold Q9EQ80 1-376 view protein structure

Promoters
RGD ID:6873790
Promoter ID:EPDNEW_M346
Type:initiation region
Name:Nif3l1_1
Description:Mus musculus Ngg1 interacting factor 3-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M348  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,445,275 - 58,445,335EPDNEW
RGD ID:6873794
Promoter ID:EPDNEW_M348
Type:initiation region
Name:Nif3l1_2
Description:Mus musculus Ngg1 interacting factor 3-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M346  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,445,516 - 58,445,576EPDNEW
RGD ID:6818172
Promoter ID:MM_KWN:830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000114337,   OTTMUST00000052148,   OTTMUST00000052150,   OTTMUST00000052151
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,502,054 - 58,502,554 (+)MPROMDB
RGD ID:6818170
Promoter ID:MM_KWN:831
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000064224,   NM_022988
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,503,931 - 58,504,431 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1929485 AgrOrtholog
Ensembl Genes ENSMUSG00000026036 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087521 ENTREZGENE
  ENSMUST00000087521.13 UniProtKB/Swiss-Prot
  ENSMUST00000114337.8 UniProtKB/TrEMBL
  ENSMUST00000129759.2 UniProtKB/TrEMBL
  ENSMUST00000151272.2 UniProtKB/TrEMBL
  ENSMUST00000171597.2 UniProtKB/Swiss-Prot
Gene3D-CATH NIF3 (NGG1p interacting factor 3)-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GTP_cyclohydrolase_I/Nif3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_cyclohydrolase_I/Nif3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NIF3L1_animal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:65102 UniProtKB/Swiss-Prot
MGD MGI:1929485 ENTREZGENE
NCBI Gene 65102 ENTREZGENE
PANTHER NIF3-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NIF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nif3l1 PhenoGen
PIRSF UCP037490_NIF3_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF102705 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1L328_MOUSE UniProtKB/TrEMBL
  D3YYF0_MOUSE UniProtKB/TrEMBL
  D3Z0G0_MOUSE UniProtKB/TrEMBL
  E9PWJ6_MOUSE UniProtKB/TrEMBL
  NIF3L_MOUSE UniProtKB/Swiss-Prot
  Q3V2R8 ENTREZGENE, UniProtKB/TrEMBL
  Q5FWC8_MOUSE UniProtKB/TrEMBL
  Q6P1B7 ENTREZGENE
  Q9D098 ENTREZGENE
  Q9D146_MOUSE UniProtKB/TrEMBL
  Q9EQ80 ENTREZGENE
UniProt Secondary Q6P1B7 UniProtKB/Swiss-Prot
  Q9D098 UniProtKB/Swiss-Prot