PTCD2 (pentatricopeptide repeat domain 2) - Rat Genome Database

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Gene: PTCD2 (pentatricopeptide repeat domain 2) Homo sapiens
Analyze
Symbol: PTCD2
Name: pentatricopeptide repeat domain 2
RGD ID: 1321137
HGNC Page HGNC:25734
Description: Enables RNA binding activity. Predicted to be involved in mitochondrion organization and regulation of mRNA processing. Predicted to act upstream of or within several processes, including liver development; muscle cell development; and ventricular cardiac muscle tissue morphogenesis. Located in mitochondrion.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CTC-365E16.1; FLJ12598; pentatricopeptide repeat-containing protein 2; pentatricopeptide repeat-containing protein 2, mitochondrial
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: PTCD2P1   PTCD2P2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38572,320,373 - 72,368,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl572,320,367 - 72,368,395 (+)EnsemblGRCh38hg38GRCh38
GRCh37571,616,200 - 71,664,222 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,651,956 - 71,690,936 (+)NCBINCBI36Build 36hg18NCBI36
Build 34571,651,973 - 71,691,792NCBI
Celera567,511,586 - 67,550,568 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef566,821,949 - 66,860,941 (+)NCBIHuRef
CHM1_1571,048,875 - 71,087,855 (+)NCBICHM1_1
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (HTP,IBA,IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14702039   PMID:16344560   PMID:18729827   PMID:20877624   PMID:21873635   PMID:22658674   PMID:22681889   PMID:23635806   PMID:25416956   PMID:26186194   PMID:28514442   PMID:31586073  
PMID:31980649   PMID:32296183   PMID:33961781   PMID:34800366   PMID:35337019   PMID:36114006   PMID:36430722  


Genomics

Comparative Map Data
PTCD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38572,320,373 - 72,368,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl572,320,367 - 72,368,395 (+)EnsemblGRCh38hg38GRCh38
GRCh37571,616,200 - 71,664,222 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,651,956 - 71,690,936 (+)NCBINCBI36Build 36hg18NCBI36
Build 34571,651,973 - 71,691,792NCBI
Celera567,511,586 - 67,550,568 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef566,821,949 - 66,860,941 (+)NCBIHuRef
CHM1_1571,048,875 - 71,087,855 (+)NCBICHM1_1
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBIT2T-CHM13v2.0
Ptcd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,456,157 - 99,481,215 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1399,456,155 - 99,481,213 (-)EnsemblGRCm39 Ensembl
GRCm381399,319,649 - 99,344,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,319,647 - 99,344,705 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713100,089,604 - 100,114,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613100,419,806 - 100,444,835 (-)NCBIMGSCv36mm8
Celera13102,971,896 - 102,996,749 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.76NCBI
Ptcd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8232,446,441 - 32,474,114 (-)NCBIGRCr8
mRatBN7.2230,712,276 - 30,739,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,712,280 - 30,739,942 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx237,782,104 - 37,809,729 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,876,429 - 35,904,060 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,680,625 - 30,708,291 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0229,570,581 - 29,598,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl229,570,538 - 29,598,277 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0248,732,573 - 48,760,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,310,431 - 30,338,099 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1230,231,255 - 30,258,441 (-)NCBI
Celera226,737,451 - 26,765,119 (-)NCBICelera
Cytogenetic Map2q12NCBI
Ptcd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555751,126,639 - 1,158,181 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555751,126,978 - 1,156,727 (+)NCBIChiLan1.0ChiLan1.0
PTCD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,955,057 - 42,993,686 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,108,761 - 41,147,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,953,639 - 42,992,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1543,552,528 - 43,591,161 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,552,528 - 43,591,162 (-)Ensemblpanpan1.1panPan2
PTCD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,351,678 - 55,382,881 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl255,351,558 - 55,382,746 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha252,320,030 - 52,351,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0255,867,971 - 55,898,984 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,867,859 - 55,898,818 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,928,162 - 52,959,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,696,288 - 53,727,283 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0254,586,965 - 54,617,985 (+)NCBIUU_Cfam_GSD_1.0
Ptcd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213186,693,878 - 186,723,121 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365494,135,811 - 4,165,009 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365494,135,854 - 4,164,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTCD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,605,012 - 48,636,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,605,014 - 48,635,954 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,593,553 - 52,620,277 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTCD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1466,658,183 - 66,695,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl466,658,212 - 66,699,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604915,414,598 - 15,455,658 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptcd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249051,427,530 - 1,453,796 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249051,427,508 - 1,454,418 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTCD2
34 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_024754.4(PTCD2):c.1072C>T (p.Pro358Ser) single nucleotide variant Malignant melanoma [RCV000066983] Chr5:72358332 [GRCh38]
Chr5:71654159 [GRCh37]
Chr5:71689915 [NCBI36]
Chr5:5q13.2
not provided
GRCh38/hg38 5p15.33-q13.3(chr5:22149-74412725)x3 copy number gain See cases [RCV000138780] Chr5:22149..74412725 [GRCh38]
Chr5:22149..73708550 [GRCh37]
Chr5:75149..73744306 [NCBI36]
Chr5:5p15.33-q13.3
pathogenic
GRCh38/hg38 5q13.2(chr5:71915937-72562961)x3 copy number gain See cases [RCV000141543] Chr5:71915937..72562961 [GRCh38]
Chr5:71211764..71858788 [GRCh37]
Chr5:71247520..71894544 [NCBI36]
Chr5:5q13.2
uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q13.2(chr5:71450015-72008955)x1 copy number loss not provided [RCV000744846] Chr5:71450015..72008955 [GRCh37]
Chr5:5q13.2
likely benign
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32
uncertain significance
GRCh38/hg38 5q11.2-13.2(chr5:58785203-73519962)x1 copy number loss Intellectual disability [RCV000984869] Chr5:58785203..73519962 [GRCh38]
Chr5:5q11.2-13.2
likely pathogenic
NM_024754.5(PTCD2):c.1100T>C (p.Leu367Pro) single nucleotide variant not specified [RCV004291685] Chr5:72358360 [GRCh38]
Chr5:71654187 [GRCh37]
Chr5:5q13.2
uncertain significance
GRCh37/hg19 5q13.2(chr5:71017577-72056514)x1 copy number loss not provided [RCV001258857] Chr5:71017577..72056514 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.814T>G (p.Cys272Gly) single nucleotide variant not specified [RCV004288205] Chr5:72343022 [GRCh38]
Chr5:71638849 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.922C>T (p.His308Tyr) single nucleotide variant not specified [RCV004145343] Chr5:72352734 [GRCh38]
Chr5:71648561 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.974T>C (p.Val325Ala) single nucleotide variant not specified [RCV004206235] Chr5:72358234 [GRCh38]
Chr5:71654061 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.35C>G (p.Pro12Arg) single nucleotide variant not specified [RCV004214648] Chr5:72320417 [GRCh38]
Chr5:71616244 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.65A>C (p.Gln22Pro) single nucleotide variant not specified [RCV004151181] Chr5:72320447 [GRCh38]
Chr5:71616274 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.101C>T (p.Ser34Phe) single nucleotide variant not specified [RCV004226191] Chr5:72320483 [GRCh38]
Chr5:71616310 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.433C>G (p.Leu145Val) single nucleotide variant not specified [RCV004110979] Chr5:72331340 [GRCh38]
Chr5:71627167 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.854T>A (p.Met285Lys) single nucleotide variant not specified [RCV004214949] Chr5:72352666 [GRCh38]
Chr5:71648493 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.716G>C (p.Arg239Thr) single nucleotide variant not specified [RCV004196672] Chr5:72338698 [GRCh38]
Chr5:71634525 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.137A>T (p.Tyr46Phe) single nucleotide variant not specified [RCV004175222] Chr5:72322181 [GRCh38]
Chr5:71618008 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.401C>T (p.Pro134Leu) single nucleotide variant not specified [RCV004076904] Chr5:72331308 [GRCh38]
Chr5:71627135 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.715A>G (p.Arg239Gly) single nucleotide variant not specified [RCV004287322] Chr5:72338697 [GRCh38]
Chr5:71634524 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.276G>C (p.Lys92Asn) single nucleotide variant not specified [RCV004276321] Chr5:72326667 [GRCh38]
Chr5:71622494 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.1057G>C (p.Val353Leu) single nucleotide variant not specified [RCV004356443] Chr5:72358317 [GRCh38]
Chr5:71654144 [GRCh37]
Chr5:5q13.2
likely benign
NM_024754.5(PTCD2):c.631T>C (p.Tyr211His) single nucleotide variant not specified [RCV004353145] Chr5:72335877 [GRCh38]
Chr5:71631704 [GRCh37]
Chr5:5q13.2
uncertain significance
GRCh38/hg38 5q13.2(chr5:71378409-72329454) copy number gain Autism spectrum disorder [RCV003883394] Chr5:71378409..72329454 [GRCh38]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.1013C>T (p.Thr338Ile) single nucleotide variant not specified [RCV004515466] Chr5:72358273 [GRCh38]
Chr5:71654100 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.772G>A (p.Val258Met) single nucleotide variant not specified [RCV004515471] Chr5:72342980 [GRCh38]
Chr5:71638807 [GRCh37]
Chr5:5q13.2
likely benign
NM_024754.5(PTCD2):c.313C>T (p.Arg105Trp) single nucleotide variant not specified [RCV004515468] Chr5:72326704 [GRCh38]
Chr5:71622531 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.573G>T (p.Met191Ile) single nucleotide variant not specified [RCV004515470] Chr5:72335819 [GRCh38]
Chr5:71631646 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.32G>T (p.Arg11Leu) single nucleotide variant not specified [RCV004515469] Chr5:72320414 [GRCh38]
Chr5:71616241 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.244A>G (p.Lys82Glu) single nucleotide variant not specified [RCV004515467] Chr5:72326635 [GRCh38]
Chr5:71622462 [GRCh37]
Chr5:5q13.2
likely benign
GRCh37/hg19 5q12.3-13.2(chr5:64364710-72835471)x1 copy number loss See cases [RCV004442777] Chr5:64364710..72835471 [GRCh37]
Chr5:5q12.3-13.2
pathogenic
NM_024754.5(PTCD2):c.387G>C (p.Glu129Asp) single nucleotide variant not specified [RCV004657821] Chr5:72331294 [GRCh38]
Chr5:71627121 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.500C>T (p.Ser167Leu) single nucleotide variant not specified [RCV004657822] Chr5:72335049 [GRCh38]
Chr5:71630876 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.608A>G (p.Tyr203Cys) single nucleotide variant not specified [RCV004846526] Chr5:72335854 [GRCh38]
Chr5:71631681 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.325G>A (p.Glu109Lys) single nucleotide variant not specified [RCV004846527] Chr5:72326716 [GRCh38]
Chr5:71622543 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.668C>G (p.Thr223Ser) single nucleotide variant not specified [RCV004846529] Chr5:72338650 [GRCh38]
Chr5:71634477 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.1123C>T (p.Arg375Cys) single nucleotide variant not specified [RCV004846530] Chr5:72358383 [GRCh38]
Chr5:71654210 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.677G>A (p.Arg226Lys) single nucleotide variant not specified [RCV004846531] Chr5:72338659 [GRCh38]
Chr5:71634486 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.970G>C (p.Asp324His) single nucleotide variant not specified [RCV004846532] Chr5:72358230 [GRCh38]
Chr5:71654057 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.1087T>A (p.Ser363Thr) single nucleotide variant not specified [RCV004846533] Chr5:72358347 [GRCh38]
Chr5:71654174 [GRCh37]
Chr5:5q13.2
uncertain significance
NM_024754.5(PTCD2):c.508A>G (p.Ile170Val) single nucleotide variant not specified [RCV004846525] Chr5:72335057 [GRCh38]
Chr5:71630884 [GRCh37]
Chr5:5q13.2
uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3261
Count of miRNA genes:952
Interacting mature miRNAs:1077
Transcripts:ENST00000308077, ENST00000380639, ENST00000460837, ENST00000486995, ENST00000493283, ENST00000503315, ENST00000503868, ENST00000510676, ENST00000511752, ENST00000515198, ENST00000536805, ENST00000543322
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596980566GWAS1100085_Hmemory performance QTL GWAS1100085 (human)0.000007memory performance57236576172365762Human
407001382GWAS650358_Hpulse pressure measurement QTL GWAS650358 (human)4e-09pulse pressure measurementpulse pressure (CMO:0000292)57235902872359029Human
597055088GWAS1151162_Hsystolic blood pressure QTL GWAS1151162 (human)5e-08systolic blood pressuresystolic blood pressure (CMO:0000004)57236158772361588Human
597276991GWAS1373065_HAlzheimer disease, polygenic risk score QTL GWAS1373065 (human)2e-09Alzheimer disease, polygenic risk score57236158772361588Human
597308093GWAS1404167_Hpulse pressure measurement QTL GWAS1404167 (human)4e-12pulse pressure measurementpulse pressure (CMO:0000292)57234096972340970Human
597132256GWAS1228330_Hmemory performance QTL GWAS1228330 (human)0.000007memory performance57236576172365762Human

Markers in Region
RH102189  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37571,654,743 - 71,654,886UniSTSGRCh37
Build 36571,690,499 - 71,690,642RGDNCBI36
Celera567,550,131 - 67,550,274RGD
Cytogenetic Map5q13.2UniSTS
HuRef566,860,504 - 66,860,647UniSTS
GeneMap99-GB4 RH Map5351.75UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001742270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007058635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_241790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_948298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC026406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC093278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI798903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA082506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC393817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000308077   ⟹   ENSP00000308948
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,373 - 72,360,225 (+)Ensembl
Ensembl Acc Id: ENST00000380639   ⟹   ENSP00000370013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,373 - 72,368,395 (+)Ensembl
Ensembl Acc Id: ENST00000460837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,335,559 - 72,358,838 (+)Ensembl
Ensembl Acc Id: ENST00000486995   ⟹   ENSP00000425606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,373 - 72,359,228 (+)Ensembl
Ensembl Acc Id: ENST00000493283
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,399 - 72,352,646 (+)Ensembl
Ensembl Acc Id: ENST00000503315   ⟹   ENSP00000425773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,398 - 72,358,912 (+)Ensembl
Ensembl Acc Id: ENST00000503868   ⟹   ENSP00000427349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,376 - 72,359,233 (+)Ensembl
Ensembl Acc Id: ENST00000510676   ⟹   ENSP00000426295
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,388 - 72,358,384 (+)Ensembl
Ensembl Acc Id: ENST00000511752   ⟹   ENSP00000429665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,373 - 72,338,671 (+)Ensembl
Ensembl Acc Id: ENST00000515198   ⟹   ENSP00000427524
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,368 - 72,352,757 (+)Ensembl
Ensembl Acc Id: ENST00000536805   ⟹   ENSP00000444772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,367 - 72,359,352 (+)Ensembl
Ensembl Acc Id: ENST00000543322   ⟹   ENSP00000438810
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl572,320,367 - 72,359,352 (+)Ensembl
RefSeq Acc Id: NM_001284403   ⟹   NP_001271332
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
HuRef566,821,943 - 66,860,941 (+)NCBI
CHM1_1571,048,869 - 71,087,855 (+)NCBI
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001284404   ⟹   NP_001271333
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
HuRef566,821,943 - 66,860,941 (+)NCBI
CHM1_1571,048,869 - 71,087,855 (+)NCBI
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001284405   ⟹   NP_001271334
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
HuRef566,821,943 - 66,860,941 (+)NCBI
CHM1_1571,048,869 - 71,087,855 (+)NCBI
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
Sequence:
RefSeq Acc Id: NM_024754   ⟹   NP_079030
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
GRCh37571,616,200 - 71,656,544 (+)NCBI
Build 36571,651,956 - 71,690,936 (+)NCBI Archive
Celera567,511,586 - 67,550,568 (+)RGD
HuRef566,821,943 - 66,860,941 (+)NCBI
CHM1_1571,048,869 - 71,087,855 (+)NCBI
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005248601   ⟹   XP_005248658
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
GRCh37571,616,200 - 71,656,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047417743   ⟹   XP_047273699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,322,182 - 72,368,395 (+)NCBI
RefSeq Acc Id: XM_047417744   ⟹   XP_047273700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,326,675 - 72,368,395 (+)NCBI
RefSeq Acc Id: XM_047417745   ⟹   XP_047273701
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,322,182 - 72,368,395 (+)NCBI
RefSeq Acc Id: XM_054353496   ⟹   XP_054209471
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
RefSeq Acc Id: XM_054353497   ⟹   XP_054209472
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,803,352 - 72,849,569 (+)NCBI
RefSeq Acc Id: XM_054353498   ⟹   XP_054209473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,807,845 - 72,849,569 (+)NCBI
RefSeq Acc Id: XM_054353499   ⟹   XP_054209474
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,803,352 - 72,849,569 (+)NCBI
RefSeq Acc Id: XR_007058635
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
RefSeq Acc Id: XR_008487161
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
RefSeq Acc Id: XR_008487162
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
RefSeq Acc Id: XR_008487163
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0572,801,543 - 72,849,569 (+)NCBI
RefSeq Acc Id: XR_241790
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
Sequence:
RefSeq Acc Id: XR_948298
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,368,395 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001271332 (Get FASTA)   NCBI Sequence Viewer  
  NP_001271333 (Get FASTA)   NCBI Sequence Viewer  
  NP_001271334 (Get FASTA)   NCBI Sequence Viewer  
  NP_079030 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248658 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273699 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273700 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273701 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209471 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209472 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209473 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209474 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH18720 (Get FASTA)   NCBI Sequence Viewer  
  BAB14162 (Get FASTA)   NCBI Sequence Viewer  
  BAG51808 (Get FASTA)   NCBI Sequence Viewer  
  BAH12866 (Get FASTA)   NCBI Sequence Viewer  
  BAH14003 (Get FASTA)   NCBI Sequence Viewer  
  BAH14048 (Get FASTA)   NCBI Sequence Viewer  
  CAG33571 (Get FASTA)   NCBI Sequence Viewer  
  EAW95704 (Get FASTA)   NCBI Sequence Viewer  
  EAW95705 (Get FASTA)   NCBI Sequence Viewer  
  EAW95706 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000308948.5
  ENSP00000370013
  ENSP00000370013.4
  ENSP00000425606.1
  ENSP00000425773.1
  ENSP00000426295
  ENSP00000426295.2
  ENSP00000427349
  ENSP00000427349.1
  ENSP00000427524.1
  ENSP00000429665.1
  ENSP00000438810
  ENSP00000438810.2
  ENSP00000444772
  ENSP00000444772.1
GenBank Protein Q8WV60 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079030   ⟸   NM_024754
- Peptide Label: isoform 1
- UniProtKB: Q6IA65 (UniProtKB/Swiss-Prot),   E9PFV7 (UniProtKB/Swiss-Prot),   B7Z8L7 (UniProtKB/Swiss-Prot),   B7Z5D0 (UniProtKB/Swiss-Prot),   Q9H9R0 (UniProtKB/Swiss-Prot),   Q8WV60 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005248658   ⟸   XM_005248601
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001271334   ⟸   NM_001284405
- Peptide Label: isoform 4
- UniProtKB: F6S289 (UniProtKB/TrEMBL),   D6RGK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271333   ⟸   NM_001284404
- Peptide Label: isoform 3
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271332   ⟸   NM_001284403
- Peptide Label: isoform 2
- UniProtKB: Q8WV60 (UniProtKB/Swiss-Prot),   B3KPU6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000425773   ⟸   ENST00000503315
Ensembl Acc Id: ENSP00000427349   ⟸   ENST00000503868
Ensembl Acc Id: ENSP00000438810   ⟸   ENST00000543322
Ensembl Acc Id: ENSP00000308948   ⟸   ENST00000308077
Ensembl Acc Id: ENSP00000444772   ⟸   ENST00000536805
Ensembl Acc Id: ENSP00000426295   ⟸   ENST00000510676
Ensembl Acc Id: ENSP00000429665   ⟸   ENST00000511752
Ensembl Acc Id: ENSP00000425606   ⟸   ENST00000486995
Ensembl Acc Id: ENSP00000370013   ⟸   ENST00000380639
Ensembl Acc Id: ENSP00000427524   ⟸   ENST00000515198
RefSeq Acc Id: XP_047273699   ⟸   XM_047417743
- Peptide Label: isoform X2
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL),   B3KPU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047273701   ⟸   XM_047417745
- Peptide Label: isoform X4
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL),   F6S289 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047273700   ⟸   XM_047417744
- Peptide Label: isoform X3
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054209471   ⟸   XM_054353496
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054209472   ⟸   XM_054353497
- Peptide Label: isoform X2
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL),   B3KPU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054209474   ⟸   XM_054353499
- Peptide Label: isoform X4
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL),   F6S289 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054209473   ⟸   XM_054353498
- Peptide Label: isoform X3
- UniProtKB: D6RGK0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WV60-F1-model_v2 AlphaFold Q8WV60 1-388 view protein structure

Promoters
RGD ID:6803380
Promoter ID:HG_KWN:50437
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_024754,   OTTHUMT00000218560,   OTTHUMT00000303974,   UC003KCA.2,   UC003KCC.1,   UC003KCD.2,   UC010IZA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36571,651,861 - 71,653,162 (-)MPROMDB
RGD ID:6869850
Promoter ID:EPDNEW_H8090
Type:multiple initiation site
Name:PTCD2_1
Description:pentatricopeptide repeat domain 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38572,320,373 - 72,320,433EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25734 AgrOrtholog
COSMIC PTCD2 COSMIC
Ensembl Genes ENSG00000049883 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000308077.9 UniProtKB/Swiss-Prot
  ENST00000380639 ENTREZGENE
  ENST00000380639.10 UniProtKB/Swiss-Prot
  ENST00000486995.5 UniProtKB/TrEMBL
  ENST00000503315.5 UniProtKB/TrEMBL
  ENST00000503868 ENTREZGENE
  ENST00000503868.5 UniProtKB/Swiss-Prot
  ENST00000510676 ENTREZGENE
  ENST00000510676.6 UniProtKB/TrEMBL
  ENST00000511752.5 UniProtKB/TrEMBL
  ENST00000515198.5 UniProtKB/TrEMBL
  ENST00000536805 ENTREZGENE
  ENST00000536805.5 UniProtKB/Swiss-Prot
  ENST00000543322 ENTREZGENE
  ENST00000543322.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000049883 GTEx
HGNC ID HGNC:25734 ENTREZGENE
Human Proteome Map PTCD2 Human Proteome Map
InterPro MRPS27/PTCD2 UniProtKB/Swiss-Prot
  Pentatricopeptide_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTCD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:79810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 79810 ENTREZGENE
OMIM 615484 OMIM
PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MRP-S27 UniProtKB/Swiss-Prot
PharmGKB PA134909110 PharmGKB
PROSITE PPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt B3KPU6 ENTREZGENE, UniProtKB/TrEMBL
  B7Z5D0 ENTREZGENE
  B7Z8L7 ENTREZGENE
  B7Z8R2_HUMAN UniProtKB/TrEMBL
  D6RGK0 ENTREZGENE, UniProtKB/TrEMBL
  D6RIZ0_HUMAN UniProtKB/TrEMBL
  D6RJH8_HUMAN UniProtKB/TrEMBL
  E5RHU2_HUMAN UniProtKB/TrEMBL
  E9PFV7 ENTREZGENE
  F6S289 ENTREZGENE, UniProtKB/TrEMBL
  PTCD2_HUMAN UniProtKB/Swiss-Prot
  Q6IA65 ENTREZGENE
  Q8WV60 ENTREZGENE
  Q9H9R0 ENTREZGENE
UniProt Secondary B7Z5D0 UniProtKB/Swiss-Prot
  B7Z8L7 UniProtKB/Swiss-Prot
  E9PFV7 UniProtKB/Swiss-Prot
  Q6IA65 UniProtKB/Swiss-Prot
  Q9H9R0 UniProtKB/Swiss-Prot